Clone Sequence Records
BO09666.3prime Sequence
814 bp (813 high quality bases) assembled on 2006-01-28
> BO09666.3prime
ATGGTCTAGAAAGCTTGCGTCTTCCTCATTAAGTACGGGATACACGAAGG
TATCGGCGGTATCCTTTCCGACGACGTTGCGGGCTATGCACTTGTAGTTG
CCCATATCCTCCCACTTGATCTCGGAGATCAGAAGATCGCCGTTGGCCAG
CACCCTGTGGCGATGTCCTTGGACGATCTCCTTGTTCTCGTTATTCAACC
AGGTGATCTCGGCGCGGGGACGGGCGTGCACGCGGCAGGGCAGCTGAATG
TTGGAGCCCATGAGGTCCAGATGCGTCTTCTCGGTGTAGATGATTCGCGG
TTTCTGGGCACCCGGGTAGGTCTTCTCCGGCGTCAGACGAGAGGAGCGAG
GAGGATGCACCACAGTGCTGGCATAGATGGTCTTGGAGCCAGTGCGTCCC
ACACACGTGTAGGTGCGGGCCTCGCTCAGCACGTGGTCGATGATATGCGA
CGATCGGACGCGCACAATGGCACTGGGCGCCTCTTCGGCAACCTGGTTGG
AGTCCAGATCATCGAGCTCCGAGCGGGGCAGGTGACCCACCACCCACTGG
ATGCTGGGCACTTGGGAGCCCATCATCTCGCAAACGATCTCGATGGTGGC
TCCATCGGCCTGCTGCAGCTTCGTCGGCGGCGTCTTGGTGAACTTGAGCC
AGTCGGCTTCGAAGGCTCGGTTGCGTGGCTTCTCCTCCTCCGCCTCGATG
GAGTTATCCACGTCGTTGCTATCGTCTACCAGGTCCACGGCTCTTCCGCG
GACAGTGGCGATGCTGCCGAACAGCAGCAGCGCTAAGGCGCACACATGTA
AATTCATGTCGACT
BO09666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15009-PA | 801 | ImpL2-RA | 10..798 | 807..19 | 3945 | 100 | Minus |
CG15009-PB | 792 | ImpL2-RB | 1..789 | 807..19 | 3945 | 100 | Minus |
CG15009-PC | 804 | ImpL2-RC | 13..801 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RD | 2355 | CG15009-RD | 733..1521 | 807..19 | 3945 | 100 | Minus |
ImpL2-RC | 989 | CG15009-RC | 71..859 | 807..19 | 3945 | 100 | Minus |
ImpL2-RB | 1651 | CG15009-RB | 733..1521 | 807..19 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224927..4225703 | 31..807 | 3885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:12:58 has no hits.
BO09666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:18 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-PB | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:44 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15009-PC | 5..804 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:34 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 727..1532 | 7..814 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:37 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 727..1532 | 7..814 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:37 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224927..4225708 | 31..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:34 Download gff for
BO09666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224927..4225708 | 31..814 | 99 | | Plus |
BO09666.5prime Sequence
821 bp (721 high quality bases) assembled on 2006-01-28
> BO09666.5prime
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACGCAAGCTTTCTAGACC
BO09666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15009-PA | 801 | ImpL2-RA | 10..798 | 17..805 | 3945 | 100 | Plus |
CG15009-PB | 792 | ImpL2-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
CG15009-PC | 804 | ImpL2-RC | 13..801 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RD | 2355 | CG15009-RD | 733..1521 | 17..805 | 3945 | 100 | Plus |
ImpL2-RC | 989 | CG15009-RC | 71..859 | 17..805 | 3945 | 100 | Plus |
ImpL2-RB | 1651 | CG15009-RB | 733..1521 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224927..4225703 | 793..17 | 3885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:39:41 has no hits.
BO09666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:19 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-PB | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:45 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15009-PC | 1..804 | 7..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:37 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 727..1532 | 10..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:42:36 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 727..1532 | 10..817 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:42:36 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224927..4225709 | 9..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:37 Download gff for
BO09666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224927..4225709 | 9..793 | 99 | | Minus |
BO09666.complete Sequence
823 bp assembled on 2008-08-15
GenBank Submission: FJ631551
> BO09666.complete
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACGCAAGCTTTCTAGACCAT
BO09666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RD | 792 | CG15009-PD | 1..789 | 17..805 | 3945 | 100 | Plus |
ImpL2-RC | 804 | CG15009-PC | 13..801 | 17..805 | 3945 | 100 | Plus |
ImpL2-RB | 792 | CG15009-PB | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-RD | 2355 | CG15009-RD | 733..1521 | 17..805 | 3945 | 100 | Plus |
ImpL2-RC | 989 | CG15009-RC | 71..859 | 17..805 | 3945 | 100 | Plus |
ImpL2-RB | 1651 | CG15009-RB | 733..1521 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4224927..4225703 | 793..17 | 3885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:30 has no hits.
BO09666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:24 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 63..870 | 10..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:03 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 733..1521 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:47 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RC | 71..859 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:31 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpL2-RB | 733..1521 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:31 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4224927..4225703 | 17..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:03 Download gff for
BO09666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4224927..4225703 | 17..793 | 100 | | Minus |
BO09666.pep Sequence
Translation from 16 to 823
> BO09666.pep
MNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFE
ADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDD
LDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVV
HPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAE
ITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDT
ADTFVYPVLNEEDASFLDH
BO09666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpL2-PD | 263 | CG15009-PD | 1..263 | 1..263 | 1375 | 100 | Plus |
ImpL2-PB | 263 | CG15009-PB | 1..263 | 1..263 | 1375 | 100 | Plus |
ImpL2-PA | 266 | CG15009-PA | 4..266 | 1..263 | 1375 | 100 | Plus |
ImpL2-PC | 267 | CG15009-PC | 5..267 | 1..263 | 1375 | 100 | Plus |
Nrg-PH | 1239 | CG1634-PH | 341..512 | 56..252 | 152 | 26.7 | Plus |