Clone BO09666 Report

Search the DGRC for BO09666

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptImpL2-RB
Protein status:BO09666.pep: Imported from assembly
Sequenced Size:823

Clone Sequence Records

BO09666.3prime Sequence

814 bp (813 high quality bases) assembled on 2006-01-28

> BO09666.3prime
ATGGTCTAGAAAGCTTGCGTCTTCCTCATTAAGTACGGGATACACGAAGG
TATCGGCGGTATCCTTTCCGACGACGTTGCGGGCTATGCACTTGTAGTTG
CCCATATCCTCCCACTTGATCTCGGAGATCAGAAGATCGCCGTTGGCCAG
CACCCTGTGGCGATGTCCTTGGACGATCTCCTTGTTCTCGTTATTCAACC
AGGTGATCTCGGCGCGGGGACGGGCGTGCACGCGGCAGGGCAGCTGAATG
TTGGAGCCCATGAGGTCCAGATGCGTCTTCTCGGTGTAGATGATTCGCGG
TTTCTGGGCACCCGGGTAGGTCTTCTCCGGCGTCAGACGAGAGGAGCGAG
GAGGATGCACCACAGTGCTGGCATAGATGGTCTTGGAGCCAGTGCGTCCC
ACACACGTGTAGGTGCGGGCCTCGCTCAGCACGTGGTCGATGATATGCGA
CGATCGGACGCGCACAATGGCACTGGGCGCCTCTTCGGCAACCTGGTTGG
AGTCCAGATCATCGAGCTCCGAGCGGGGCAGGTGACCCACCACCCACTGG
ATGCTGGGCACTTGGGAGCCCATCATCTCGCAAACGATCTCGATGGTGGC
TCCATCGGCCTGCTGCAGCTTCGTCGGCGGCGTCTTGGTGAACTTGAGCC
AGTCGGCTTCGAAGGCTCGGTTGCGTGGCTTCTCCTCCTCCGCCTCGATG
GAGTTATCCACGTCGTTGCTATCGTCTACCAGGTCCACGGCTCTTCCGCG
GACAGTGGCGATGCTGCCGAACAGCAGCAGCGCTAAGGCGCACACATGTA
AATTCATGTCGACT

BO09666.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PA 801 ImpL2-RA 10..798 807..19 3945 100 Minus
CG15009-PB 792 ImpL2-RB 1..789 807..19 3945 100 Minus
CG15009-PC 804 ImpL2-RC 13..801 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1521 807..19 3945 100 Minus
ImpL2-RC 989 CG15009-RC 71..859 807..19 3945 100 Minus
ImpL2-RB 1651 CG15009-RB 733..1521 807..19 3945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 31..807 3885 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:12:58 has no hits.

BO09666.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:18 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-PB 1..792 15..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:44 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 5..804 15..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:34 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 7..814 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:37 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 7..814 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:37 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225708 31..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:34 Download gff for BO09666.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225708 31..814 99   Plus

BO09666.5prime Sequence

821 bp (721 high quality bases) assembled on 2006-01-28

> BO09666.5prime
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACGCAAGCTTTCTAGACC

BO09666.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PA 801 ImpL2-RA 10..798 17..805 3945 100 Plus
CG15009-PB 792 ImpL2-RB 1..789 17..805 3945 100 Plus
CG15009-PC 804 ImpL2-RC 13..801 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1521 17..805 3945 100 Plus
ImpL2-RC 989 CG15009-RC 71..859 17..805 3945 100 Plus
ImpL2-RB 1651 CG15009-RB 733..1521 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 793..17 3885 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:39:41 has no hits.

BO09666.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:19 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-PB 1..792 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:45 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..804 7..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:37 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 10..817 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:42:36 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 10..817 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:42:36 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225709 9..793 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:37 Download gff for BO09666.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225709 9..793 99   Minus

BO09666.complete Sequence

823 bp assembled on 2008-08-15

GenBank Submission: FJ631551

> BO09666.complete
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACGCAAGCTTTCTAGACCAT

BO09666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 792 CG15009-PD 1..789 17..805 3945 100 Plus
ImpL2-RC 804 CG15009-PC 13..801 17..805 3945 100 Plus
ImpL2-RB 792 CG15009-PB 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1521 17..805 3945 100 Plus
ImpL2-RC 989 CG15009-RC 71..859 17..805 3945 100 Plus
ImpL2-RB 1651 CG15009-RB 733..1521 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 793..17 3885 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:45:30 has no hits.

BO09666.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:24 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 63..870 10..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:03 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 733..1521 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:47 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 71..859 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:31 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 733..1521 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:31 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225703 17..793 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:03 Download gff for BO09666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225703 17..793 100   Minus

BO09666.pep Sequence

Translation from 16 to 823

> BO09666.pep
MNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFE
ADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDD
LDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVV
HPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAE
ITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDT
ADTFVYPVLNEEDASFLDH

BO09666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-PD 263 CG15009-PD 1..263 1..263 1375 100 Plus
ImpL2-PB 263 CG15009-PB 1..263 1..263 1375 100 Plus
ImpL2-PA 266 CG15009-PA 4..266 1..263 1375 100 Plus
ImpL2-PC 267 CG15009-PC 5..267 1..263 1375 100 Plus
Nrg-PH 1239 CG1634-PH 341..512 56..252 152 26.7 Plus