Clone Sequence Records
BO09667.3prime Sequence
881 bp (804 high quality bases) assembled on 2006-01-28
> BO09667.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGCCAGCGATGGGGGCGGCACCTTGTT
TCTGGTTCTCGTTTTCCTTCTCCAGCTGCTTGCCCAGGTATTCCCAATTG
TGTACCATCAGCTTTTGCACAGCCAGCAGGGCTTCGTATCGCACATTGGG
ATCCTCGTGGCCAAGATGCTGCATCACGATCTGCTTGCCTCCGAGTTGTT
CCAAGACGTGCTTGCCGCGGGGATAGTGGCGCACATACTCCCCGATGTCG
AAGCAGGCGACGGAAAGGATGATGGCATCTTTTGAGGTTTCCAGGAGGTG
GACGAGGATGCGCAGCAACTCGTAGTTCTTTTCGTTTAGGCGCTGGGCAT
TCTCGCGCCAGAACTTGGCCGACTTGTGCACAGGCGACCATTCCAAGCGA
CCGCTGCGCACCTCTGTGGCGTACTCATCAAAGGAGCTCAAGTCTTGCAC
CGAATTCTGGAGCTTCTCGCTCAGGTACTCTACGTCGGCGGTAATGTCCT
CGTCGTCGAAGCGACGCTGCTCCAGGATGGATAGCTGCTTCAGCACCTTG
CACTGGACCATGGCGATGCAATGGTCCTTGGCCACCGATGAATCCTCCGG
CTTCTCGATCAGATTGCGGAAGACCGCGAGGATAATGCGTGTCACCTTCT
CCTTGGCACAATCGCTGAGGATATCAGCCAGGATGGGGATCACGCTGAAC
TTATTCATCTTGGCGGCCAGCAGGGGATTGAAGGTCAGCACCCACAGGCA
AAAGATCAACTGGTATTGCACCTGGAAGTTGACACGGGTCGACAAGATAC
GGATCAGAGTGCTGATTCCGTCGACTCCCACAAAGGCAAATCGATACTCA
TCCACACGGAGCATCATCTGCAGGCACCGGG
BO09667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17332-PA | 1407 | VhaSFD-RA | 542..1404 | 881..19 | 4315 | 100 | Minus |
| CG17332-PB | 1629 | VhaSFD-RB | 764..1626 | 881..19 | 4315 | 100 | Minus |
| CG17332-PD | 1326 | VhaSFD-RD | 542..1319 | 881..104 | 3890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 702..1564 | 881..19 | 4315 | 100 | Minus |
| VhaSFD-RB | 2376 | CG17332-RB | 924..1786 | 881..19 | 4315 | 100 | Minus |
| VhaSFD-RA | 2154 | CG17332-RA | 702..1564 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16724232..16724796 | 209..773 | 2825 | 100 | Plus |
| 2L | 23513712 | 2L | 16724057..16724171 | 94..208 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 16724856..16724968 | 769..881 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 16723822..16723898 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:09:09 has no hits.
BO09667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:20 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PA | 542..1407 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:46 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PB | 764..1629 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:16 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 702..1564 | 19..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:16 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 702..1564 | 19..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:16 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16723822..16723897 | 19..94 | 100 | <- | Plus |
| 2L | 16724058..16724171 | 95..208 | 100 | <- | Plus |
| 2L | 16724232..16724794 | 209..771 | 100 | <- | Plus |
| 2L | 16724859..16724968 | 772..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:16 Download gff for
BO09667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16723822..16723897 | 19..94 | 100 | <- | Plus |
| arm_2L | 16724058..16724171 | 95..208 | 100 | <- | Plus |
| arm_2L | 16724232..16724794 | 209..771 | 100 | <- | Plus |
| arm_2L | 16724859..16724968 | 772..881 | 100 | | Plus |
BO09667.5prime Sequence
936 bp (788 high quality bases) assembled on 2006-01-28
> BO09667.5prime
GAAGTTATCAGTCGACATGACTACCGCCTTGTATTTGCCCGAGGAGAACA
TTGATATGATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATC
CGCACCAGGACGATCAACTGGGCTTCGTACATGCAGTCGCAGATGATCAG
CGAGGAGGACTACAAGGCAATCAGCGCGTTGGACAAGTCACGTGCCAGCT
TCTTGGCCCAGAACTCCAGCCAGGTGGTGAAGACGCTGCTTAATCTGGTT
TCGCATCTGTCGAAGGACTCCACCATTCAGTACATCCTTGTGCTGCTCGA
CGATTTGCTGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAG
CCGGCAAGCTGAAGCAGTGCATCTGGGGTCCGTTCCTGAACCTGCTGAAC
CGTCAGGATGGCTTTATTGTCAACATGTCGTCGCGCATCCTGGCCAAATT
CGCCTGCTGGGGCCATGAGACCATGCCCAAGTCCGACCTGAACTTCTATC
TGCAGTTCCTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAG
TCGGTGGCCCGGTGCCTGCAGATGATGCTCCGTGTGGATGAGTATCGATT
TGCCTTTGTGGGAGTCGACGGAATCAGCACTCTGATCCGTATCTTGTCGA
CCCGTGTCAACTTCCAGGTGCAATACCAGTTGATCTTTTGCCTGTGGGTG
CTGACCTTCAATCCCCTGCTGGCCGCCAAGATGAATAAGTTCAGCGTGAT
CCCCATCCTGGCTGATATCCTCAGCGATTGTGCCAAGGAGAAGGTGACAC
GCATTATCCTCGCGGTCTTCCGCAATCTGATCGAGAAGCCGGAAGAATCA
TCGGTGGGCAAGGACCATTGCATCGCCATGGTCCAGTGCAAGGTGCTGAA
GCAGCTATCCATCCTGGAGCAGCGTCGCTTCGACGA
BO09667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17332-PA | 1407 | VhaSFD-RA | 1..920 | 17..936 | 4525 | 99.6 | Plus |
| CG17332-PD | 1326 | VhaSFD-RD | 1..920 | 17..936 | 4525 | 99.6 | Plus |
| CG17332-PB | 1629 | VhaSFD-RB | 1..516 | 17..532 | 2580 | 100 | Plus |
| CG17332-PB | 1629 | VhaSFD-RB | 739..1142 | 533..936 | 1945 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..1080 | 17..936 | 4555 | 99.7 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..1080 | 17..936 | 4555 | 99.7 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..1080 | 17..936 | 4555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16727010..16727489 | 532..53 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 16724526..16724796 | 936..666 | 1310 | 98.9 | Minus |
| 2L | 23513712 | 2L | 16724856..16724993 | 670..533 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:45:50 has no hits.
BO09667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:21 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PD | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:48 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PD | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:26 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 156..1079 | 12..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:17 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 156..1079 | 12..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:17 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16724527..16724794 | 668..935 | 98 | <- | Minus |
| 2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| 2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| 2L | 16727630..16727671 | 12..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:26 Download gff for
BO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| arm_2L | 16724527..16724794 | 668..935 | 98 | <- | Minus |
| arm_2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| arm_2L | 16727630..16727671 | 12..53 | 95 | | Minus |
BO09667.complete Sequence
1438 bp assembled on 2008-08-15
GenBank Submission: FJ631552
> BO09667.complete
GAAGTTATCAGTCGACATGACTACCGCCTTGTATTTGCCCGAGGAGAACA
TTGATATGATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATC
CGCACCAGGACGATCAACTGGGCTTCGTACATGCAGTCGCAGATGATCAG
CGAGGAGGACTACAAGGCAATCAGCGCGTTGGACAAGTCACGTGCCAGCT
TCTTGGCCCAGAACTCCAGCCAGGTGGTGAAGACGCTGCTTAATCTGGTT
TCGCATCTGTCGAAGGACTCCACCATTCAGTACATCCTTGTGCTGCTCGA
CGATTTGCTGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAG
CCGGCAAGCTGAAGCAGTGCATCTGGGGTCCGTTCCTGAACCTGCTGAAC
CGTCAGGATGGCTTTATTGTCAACATGTCGTCGCGCATCCTGGCCAAATT
CGCCTGCTGGGGCCATGAGACCATGCCCAAGTCCGACCTGAACTTCTATC
TGCAGTTCCTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAG
TCGGTGGCCCGGTGCCTGCAGATGATGCTCCGTGTGGATGAGTATCGATT
TGCCTTTGTGGGAGTCGACGGAATCAGCACTCTGATCCGTATCTTGTCGA
CCCGTGTCAACTTCCAGGTGCAATACCAGTTGATCTTTTGCCTGTGGGTG
CTGACCTTCAATCCCCTGCTGGCCGCCAAGATGAATAAGTTCAGCGTGAT
CCCCATCCTGGCTGATATCCTCAGCGATTGTGCCAAGGAGAAGGTGACAC
GCATTATCCTCGCGGTCTTCCGCAATCTGATCGAGAAGCCGGAGGATTCA
TCGGTGGCCAAGGACCATTGCATCGCCATGGTCCAGTGCAAGGTGCTGAA
GCAGCTATCCATCCTGGAGCAGCGTCGCTTCGACGACGAGGACATTACCG
CCGACGTAGAGTACCTGAGCGAGAAGCTCCAGAATTCGGTGCAAGACTTG
AGCTCCTTTGATGAGTACGCCACAGAGGTGCGCAGCGGTCGCTTGGAATG
GTCGCCTGTGCACAAGTCGGCCAAGTTCTGGCGCGAGAATGCCCAGCGCC
TAAACGAAAAGAACTACGAGTTGCTGCGCATCCTCGTCCACCTCCTGGAA
ACCTCAAAAGATGCCATCATCCTTTCCGTCGCCTGCTTCGACATCGGGGA
GTATGTGCGCCACTATCCCCGCGGCAAGCACGTCTTGGAACAACTCGGAG
GCAAGCAGATCGTGATGCAGCATCTTGGCCACGAGGATCCCAATGTGCGA
TACGAAGCCCTGCTGGCTGTGCAAAAGCTGATGGTACACAATTGGGAATA
CCTGGGCAAGCAGCTGGAGAAGGAAAACGAGAACCAGAAACAAGGTGCCG
CCCCCATCGCTGGCAAGGCCGCAAGCTTTCTAGACCAT
BO09667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 1407 | CG17332-PE | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| VhaSFD-RA | 1407 | CG17332-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| VhaSFD-RD | 1326 | CG17332-PD | 1..1319 | 17..1335 | 6595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..1564 | 17..1420 | 7020 | 100 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..1564 | 17..1420 | 7020 | 100 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..1479 | 17..1335 | 6595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16724232..16724796 | 1230..666 | 2825 | 100 | Minus |
| 2L | 23513712 | 2L | 16727010..16727489 | 532..53 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 16724856..16724993 | 670..533 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 16724057..16724171 | 1345..1231 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 16723822..16723898 | 1420..1344 | 385 | 100 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:51:48 has no hits.
BO09667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:06 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 155..1563 | 12..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:02 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 161..1564 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:04 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 160..1563 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:44 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 161..1564 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:44 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16723820..16723897 | 1345..1422 | 97 | <- | Minus |
| 2L | 16724058..16724171 | 1231..1344 | 100 | <- | Minus |
| 2L | 16724232..16724794 | 668..1230 | 100 | <- | Minus |
| 2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| 2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| 2L | 16727630..16727666 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:02 Download gff for
BO09667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16723820..16723897 | 1345..1422 | 97 | <- | Minus |
| arm_2L | 16724058..16724171 | 1231..1344 | 100 | <- | Minus |
| arm_2L | 16724232..16724794 | 668..1230 | 100 | <- | Minus |
| arm_2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| arm_2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| arm_2L | 16727630..16727666 | 17..53 | 100 | | Minus |
BO09667.pep Sequence
Translation from 16 to 1438
> BO09667.pep
MTTALYLPEENIDMIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYK
AISALDKSRASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQE
DRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGH
ETMPKSDLNFYLQFLKDQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGV
DGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKFSVIPILAD
ILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSIL
EQRRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHK
SAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHY
PRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMVHNWEYLGKQL
EKENENQKQGAAPIAGKAASFLDH
BO09667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-PE | 468 | CG17332-PE | 1..468 | 1..468 | 2390 | 100 | Plus |
| VhaSFD-PA | 468 | CG17332-PA | 1..468 | 1..468 | 2390 | 100 | Plus |
| VhaSFD-PD | 441 | CG17332-PD | 1..440 | 1..440 | 2238 | 100 | Plus |
| VhaSFD-PB | 542 | CG17332-PB | 120..542 | 35..468 | 1520 | 73 | Plus |
| VhaSFD-PB | 542 | CG17332-PB | 1..182 | 1..182 | 887 | 96.2 | Plus |
