Clone BO09688 Report

Search the DGRC for BO09688

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9c1-RA
Protein status:BO09688.pep: Imported from assembly
Sequenced Size:1600

Clone Sequence Records

BO09688.3prime Sequence

874 bp (823 high quality bases) assembled on 2006-01-28

> BO09688.3prime
ATGGTCTTGAATGCTTGCAGCGGGTCCTCGGGACTCCAACTTGCACCAGA
ACAGCTCCCGGGGCAGCAGTCGGAAACCGGAGATGCTGCTCATCATGTCC
GCCGGAGTGCGATCCGTAGGCTTCAGGTGGTAGCGCAGGACCAACTGGAA
GATCAGGGACTTCACCTCCATGAGAGCCAGCCGGTTGCCTATGCAGCTTC
GTTGGCCCACTCCAAAGGGCAGGTACGTGAACTGCCGGATCTCGTGCTTG
TGCTCCTCGTCAAAGCGCTCCGGTCGGAATTGCTCGGGTTCCGGGAAGTT
ATCCGGGTCGTGATGAAGTGCCCCCACGTTGATGTGCACTAAGTCGTCCT
CCCGCAGGTTAACCACCACCTCGCCTTCCTCATCCTTCAACTGGAAATCA
GACCCACACATTCGATCCACGATGAACGCCGGTGGCCACTTTCTCAGCGA
CTCGGACACCACGCAGTTCAGATATTTCATGCCCATCAGGGTGTCGTAGT
CTAGTGGCTTCTCACCCAGCTGCTCCTTTACGGCCAGGATCTCCGCGAGC
AATTTTTCTTGCACTTCGGGGTTCATCATAAGTTCGTAGCTGGTGAAGCT
AAGGCAGGTGGCCACTGTTTCGAATCCTGCCGAGAAGAACAAGAGGCACT
GGGCCAGCAAGTCGTCATCGTTGAATTCGGCCTTATCCTGCTGTGCTGCA
CTCTCCGCAGATCCTTCTTGCTCTGCCTTAAACTGTCTCTGCGCCTCCAT
CAGCAAATGAATCATATCGGGCCGCACGATACTCTGCTCCTTTCGATACT
TCATGGCACCGAAGACCAGCTTTTTGAAGTAGTCCACGTTATTCATGTCC
ATCACGGGGACCCGAAGTGCCTTC

BO09688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3616-PA 1569 Cyp9c1-RA 711..1566 874..19 4255 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 834..1689 874..19 4265 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24632016..24632869 872..19 4255 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:47:24 has no hits.

BO09688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:57 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 711..1569 15..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:34 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 711..1569 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:44:08 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 834..1692 15..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:00 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 834..1692 15..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:00 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24632014..24632872 15..874 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:44:08 Download gff for BO09688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20519537..20520395 15..874 99   Minus

BO09688.5prime Sequence

911 bp (814 high quality bases) assembled on 2006-01-28

> BO09688.5prime
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGC

BO09688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3616-PA 1569 Cyp9c1-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 123..1018 16..911 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24631422..24631960 193..731 2695 100 Plus
2R 25286936 2R 24632016..24632198 729..911 915 100 Plus
2R 25286936 2R 24631185..24631364 16..195 900 100 Plus
Blast to na_te.dros performed 2015-02-12 11:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3044..3100 694..750 114 66.7 Plus

BO09688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:59 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:36 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:41 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 116..1018 7..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:18 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 116..1018 7..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:18 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24631178..24631364 7..195 97 -> Plus
2R 24631425..24631959 196..730 100 -> Plus
2R 24632018..24632198 731..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:41 Download gff for BO09688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20518701..20518887 7..195 97 -> Plus
arm_2R 20518948..20519482 196..730 100 -> Plus
arm_2R 20519541..20519721 731..911 100   Plus

BO09688.complete Sequence

1600 bp assembled on 2008-08-15

> BO09688.complete
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGCAGGATAAGGCCGAATTCAACGATGACGACTTGCTGGCCC
AGTGCCTCTTGTTCTTCTCGGCAGGATTCGAAACAGTGGCCACCTGCCTT
AGCTTCACCAGCTACGAACTTATGATGAACCCCGAAGTGCAAGAAAAATT
GCTCGCGGAGATCCTGGCCGTAAAGGAGCAGCTGGGTGAGAAGCCACTAG
ACTACGACACCCTGATGGGCATGAAATATCTGAACTGCGTGGTGTCCGAG
TCGCTGAGAAAGTGGCCACCGGCGTTCATCGTGGATCGAATGTGTGGGTC
TGATTTCCAGTTGAAGGATGAGGAAGGCGAGGTGGTGGTTAACCTGCGGG
AGGACGACTTAGTGCACATCAACGTGGGGGCACTTCATCACGACCCGGAT
AACTTCCCGGAACCCGAGCAATTCCGACCGGAGCGCTTTGACGAGGAGCA
CAAGCACGAGATCCGGCAGTTCACGTACCTGCCCTTTGGAGTGGGCCAAC
GAAGCTGCATAGGCAACCGGCTGGCTCTCATGGAGGTGAAGTCCCTGATC
TTCCAGTTGGTCCTGCGCTACCACCTGAAGCCTACGGATCGCACTCCGGC
GGACATGATGAGCAGCATCTCCGGTTTCCGACTGCTGCCCCGGGAGCTGT
TCTGGTGCAAGTTGGAGTCCCGAGGACCCGCTGCAAGCATTCAAGACCAT

BO09688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1569 CG3616-PA 1..1566 17..1582 7815 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 123..1689 16..1582 7820 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24632016..24632869 729..1582 4255 99.9 Plus
2R 25286936 2R 24631422..24631960 193..731 2695 100 Plus
2R 25286936 2R 24631185..24631364 16..195 900 100 Plus
Blast to na_te.dros performed 2014-11-27 15:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3044..3100 694..750 114 66.7 Plus

BO09688.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:04 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 104..1680 7..1586 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:28 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 124..1689 17..1584 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:05 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 112..1677 17..1584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:19 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 124..1689 17..1584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:19 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24631186..24631364 17..195 100 -> Plus
2R 24631425..24631959 196..730 100 -> Plus
2R 24632018..24632869 731..1584 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:28 Download gff for BO09688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20518709..20518887 17..195 100 -> Plus
arm_2R 20518948..20519482 196..730 100 -> Plus
arm_2R 20519541..20520392 731..1584 99   Plus

BO09688.pep Sequence

Translation from 16 to 1600

> BO09688.pep
MVFVELSIFVAFIGLLLYKWSVYTFGYFSKRGVAHEKPIPLLGNIPWSVL
MGKESYIKHSIDLHLRLKQHKVYGVFNLRDPLYYLSDPELIRQVGIKNFD
TFTNHRKGITEGFNDTSVISKSLLSLRDRRWKQMRSTLTPTFTSLKIRQM
FELIHFCNVEAVDFVQRQLDAGTSELELKDFFTRYTNDVIATAAFGIQVN
SFKDPNNEFFSIGQRISEFTFWGGLKVMLYILMPKLMKALRVPVMDMNNV
DYFKKLVFGAMKYRKEQSIVRPDMIHLLMEAQRQFKAEQEGSAESAAQQD
KAEFNDDDLLAQCLLFFSAGFETVATCLSFTSYELMMNPEVQEKLLAEIL
AVKEQLGEKPLDYDTLMGMKYLNCVVSESLRKWPPAFIVDRMCGSDFQLK
DEEGEVVVNLREDDLVHINVGALHHDPDNFPEPEQFRPERFDEEHKHEIR
QFTYLPFGVGQRSCIGNRLALMEVKSLIFQLVLRYHLKPTDRTPADMMSS
ISGFRLLPRELFWCKLESRGPAASIQDH

BO09688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-PA 522 CG3616-PA 1..522 1..522 2728 100 Plus
Cyp9h1-PA 518 CG17577-PA 6..517 4..519 1332 50.1 Plus
Cyp9b2-PA 505 CG4486-PA 1..504 1..519 1066 42 Plus
Cyp9f2-PA 516 CG11466-PA 4..515 5..519 1063 42.4 Plus
Cyp9b1-PA 505 CG4485-PA 1..504 1..519 1054 40.7 Plus