Clone Sequence Records
BO09688.3prime Sequence
874 bp (823 high quality bases) assembled on 2006-01-28
> BO09688.3prime
ATGGTCTTGAATGCTTGCAGCGGGTCCTCGGGACTCCAACTTGCACCAGA
ACAGCTCCCGGGGCAGCAGTCGGAAACCGGAGATGCTGCTCATCATGTCC
GCCGGAGTGCGATCCGTAGGCTTCAGGTGGTAGCGCAGGACCAACTGGAA
GATCAGGGACTTCACCTCCATGAGAGCCAGCCGGTTGCCTATGCAGCTTC
GTTGGCCCACTCCAAAGGGCAGGTACGTGAACTGCCGGATCTCGTGCTTG
TGCTCCTCGTCAAAGCGCTCCGGTCGGAATTGCTCGGGTTCCGGGAAGTT
ATCCGGGTCGTGATGAAGTGCCCCCACGTTGATGTGCACTAAGTCGTCCT
CCCGCAGGTTAACCACCACCTCGCCTTCCTCATCCTTCAACTGGAAATCA
GACCCACACATTCGATCCACGATGAACGCCGGTGGCCACTTTCTCAGCGA
CTCGGACACCACGCAGTTCAGATATTTCATGCCCATCAGGGTGTCGTAGT
CTAGTGGCTTCTCACCCAGCTGCTCCTTTACGGCCAGGATCTCCGCGAGC
AATTTTTCTTGCACTTCGGGGTTCATCATAAGTTCGTAGCTGGTGAAGCT
AAGGCAGGTGGCCACTGTTTCGAATCCTGCCGAGAAGAACAAGAGGCACT
GGGCCAGCAAGTCGTCATCGTTGAATTCGGCCTTATCCTGCTGTGCTGCA
CTCTCCGCAGATCCTTCTTGCTCTGCCTTAAACTGTCTCTGCGCCTCCAT
CAGCAAATGAATCATATCGGGCCGCACGATACTCTGCTCCTTTCGATACT
TCATGGCACCGAAGACCAGCTTTTTGAAGTAGTCCACGTTATTCATGTCC
ATCACGGGGACCCGAAGTGCCTTC
BO09688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3616-PA | 1569 | Cyp9c1-RA | 711..1566 | 874..19 | 4255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 834..1689 | 874..19 | 4265 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24632016..24632869 | 872..19 | 4255 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:47:24 has no hits.
BO09688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:57 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 711..1569 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:34 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 711..1569 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:44:08 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 834..1692 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:00 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 834..1692 | 15..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:00 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24632014..24632872 | 15..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:44:08 Download gff for
BO09688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20519537..20520395 | 15..874 | 99 | | Minus |
BO09688.5prime Sequence
911 bp (814 high quality bases) assembled on 2006-01-28
> BO09688.5prime
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGC
BO09688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3616-PA | 1569 | Cyp9c1-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 123..1018 | 16..911 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24631422..24631960 | 193..731 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 24632016..24632198 | 729..911 | 915 | 100 | Plus |
2R | 25286936 | 2R | 24631185..24631364 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3044..3100 | 694..750 | 114 | 66.7 | Plus |
BO09688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:17:59 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:36 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:41 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 116..1018 | 7..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:18 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 116..1018 | 7..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:18 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24631178..24631364 | 7..195 | 97 | -> | Plus |
2R | 24631425..24631959 | 196..730 | 100 | -> | Plus |
2R | 24632018..24632198 | 731..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:41 Download gff for
BO09688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20518701..20518887 | 7..195 | 97 | -> | Plus |
arm_2R | 20518948..20519482 | 196..730 | 100 | -> | Plus |
arm_2R | 20519541..20519721 | 731..911 | 100 | | Plus |
BO09688.complete Sequence
1600 bp assembled on 2008-08-15
> BO09688.complete
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGCAGGATAAGGCCGAATTCAACGATGACGACTTGCTGGCCC
AGTGCCTCTTGTTCTTCTCGGCAGGATTCGAAACAGTGGCCACCTGCCTT
AGCTTCACCAGCTACGAACTTATGATGAACCCCGAAGTGCAAGAAAAATT
GCTCGCGGAGATCCTGGCCGTAAAGGAGCAGCTGGGTGAGAAGCCACTAG
ACTACGACACCCTGATGGGCATGAAATATCTGAACTGCGTGGTGTCCGAG
TCGCTGAGAAAGTGGCCACCGGCGTTCATCGTGGATCGAATGTGTGGGTC
TGATTTCCAGTTGAAGGATGAGGAAGGCGAGGTGGTGGTTAACCTGCGGG
AGGACGACTTAGTGCACATCAACGTGGGGGCACTTCATCACGACCCGGAT
AACTTCCCGGAACCCGAGCAATTCCGACCGGAGCGCTTTGACGAGGAGCA
CAAGCACGAGATCCGGCAGTTCACGTACCTGCCCTTTGGAGTGGGCCAAC
GAAGCTGCATAGGCAACCGGCTGGCTCTCATGGAGGTGAAGTCCCTGATC
TTCCAGTTGGTCCTGCGCTACCACCTGAAGCCTACGGATCGCACTCCGGC
GGACATGATGAGCAGCATCTCCGGTTTCCGACTGCTGCCCCGGGAGCTGT
TCTGGTGCAAGTTGGAGTCCCGAGGACCCGCTGCAAGCATTCAAGACCAT
BO09688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1569 | CG3616-PA | 1..1566 | 17..1582 | 7815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 123..1689 | 16..1582 | 7820 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24632016..24632869 | 729..1582 | 4255 | 99.9 | Plus |
2R | 25286936 | 2R | 24631422..24631960 | 193..731 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 24631185..24631364 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3044..3100 | 694..750 | 114 | 66.7 | Plus |
BO09688.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:04 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 104..1680 | 7..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:28 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 124..1689 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:05 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 112..1677 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:19 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 124..1689 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:19 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24631186..24631364 | 17..195 | 100 | -> | Plus |
2R | 24631425..24631959 | 196..730 | 100 | -> | Plus |
2R | 24632018..24632869 | 731..1584 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:28 Download gff for
BO09688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20518709..20518887 | 17..195 | 100 | -> | Plus |
arm_2R | 20518948..20519482 | 196..730 | 100 | -> | Plus |
arm_2R | 20519541..20520392 | 731..1584 | 99 | | Plus |
BO09688.pep Sequence
Translation from 16 to 1600
> BO09688.pep
MVFVELSIFVAFIGLLLYKWSVYTFGYFSKRGVAHEKPIPLLGNIPWSVL
MGKESYIKHSIDLHLRLKQHKVYGVFNLRDPLYYLSDPELIRQVGIKNFD
TFTNHRKGITEGFNDTSVISKSLLSLRDRRWKQMRSTLTPTFTSLKIRQM
FELIHFCNVEAVDFVQRQLDAGTSELELKDFFTRYTNDVIATAAFGIQVN
SFKDPNNEFFSIGQRISEFTFWGGLKVMLYILMPKLMKALRVPVMDMNNV
DYFKKLVFGAMKYRKEQSIVRPDMIHLLMEAQRQFKAEQEGSAESAAQQD
KAEFNDDDLLAQCLLFFSAGFETVATCLSFTSYELMMNPEVQEKLLAEIL
AVKEQLGEKPLDYDTLMGMKYLNCVVSESLRKWPPAFIVDRMCGSDFQLK
DEEGEVVVNLREDDLVHINVGALHHDPDNFPEPEQFRPERFDEEHKHEIR
QFTYLPFGVGQRSCIGNRLALMEVKSLIFQLVLRYHLKPTDRTPADMMSS
ISGFRLLPRELFWCKLESRGPAASIQDH
BO09688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-PA | 522 | CG3616-PA | 1..522 | 1..522 | 2728 | 100 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 6..517 | 4..519 | 1332 | 50.1 | Plus |
Cyp9b2-PA | 505 | CG4486-PA | 1..504 | 1..519 | 1066 | 42 | Plus |
Cyp9f2-PA | 516 | CG11466-PA | 4..515 | 5..519 | 1063 | 42.4 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 1..504 | 1..519 | 1054 | 40.7 | Plus |