Clone BO09691 Report

Search the DGRC for BO09691

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptns2-RA
Protein status:BO09691.pep: Imported from assembly
Sequenced Size:2056

Clone Sequence Records

BO09691.3prime Sequence

936 bp (803 high quality bases) assembled on 2006-01-28

> BO09691.3prime
ATGGTCTAGAAAGCTTGCCGCGTCCTTCTTTTTGTTTCTATTGCGATTCT
TAACATTTGTCGTCTCGTAAAAGTTGCTGCCAATCTTCTTGCGTTTCTGA
CTGCGCTCCAGGGAGCGTTTTTGCTTTGCAGTCAACCGAGGAGCCTTTGA
AGTGCTGGGTCCATCGTCGTCAGAGCTGCCAGCACCATCCGAATCACCAG
GTTGTATTTTGGCCACTCGGAATTTACCAGACGATGTGATGGCCAGCTGT
TGTGGCTTCTTTGACTTGGCCTTCTTGTGCACAACGCGTTGCAAGTCCTC
ATTGTACTCGTCCTCCGAGTAAAACTCGTCCGCTCCATCGCTAGACTCCT
CGTCCTCTTCACCGAGGTTGTGGATGCGAGCCTTTTTCTTTGCCGCACGC
TCGGCCTTCTGTTGCTCTAAAAGCTCTAGATCTATGTGATCAAGATCCTT
CACATCTTCCTGCTCATACTCAAGACCCACGCGTATTTTTCGAAAATCTT
GGATCTGCTTAAACTCGCGCGCCTTCTTTACAGACTCACTGACGAATGTA
GGTGCCTCGGATTTAGCATCTTCGTTGGGATCCTCTGCAACTACTTCCTC
CTCCTTACCCTCCTGGGATTTGGGAACTGCGAATCCTTCGGGTGGAACGT
AGAAAGGAAGTTTGCCTCGTTGCCAATCGTTAAGCACCATACGGGCTGTT
ACCGTAACGTCCGGTTCACCGCCTTTTAGCAACTTGCCGGTCTTTTGAGC
CAACTGTTCTAAAAAGTGCGTGGATGTGTTCCAGTGTTCAATTTTGTAGT
TCTTTGAAATGTACTCCGGACGCACGCGTTTCAGCAGAGAGTCTACGTAA
TCTTCAGGATTTGTGACGAGCTCCACCCGCACCACACCCTTCAACACTTT
CTCGGTGTCAGTCTCCGCGGTGGGATACACAACGCC

BO09691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6501-PA 2025 Ngp-RA 1105..2022 936..19 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-RA 2233 CG6501-RA 1233..2150 936..19 4575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565862..17566779 19..936 4575 99.9 Plus
Blast to na_te.dros performed on 2015-01-31 14:13:30 has no hits.

BO09691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:02 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
Ngp-PA 1105..2025 15..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:40 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6501-PA 1105..2025 15..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:49 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 1233..2153 15..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:19 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 1233..2153 15..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:19 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17565858..17566779 15..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:49 Download gff for BO09691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13453363..13454284 15..936 99   Plus

BO09691.5prime Sequence

948 bp (869 high quality bases) assembled on 2006-01-28

> BO09691.5prime
GAAGTTATCAGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCC
GGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCC
AAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAA
GCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAA
AGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATG
GCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTC
GCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGG
ATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTG
AACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTT
CGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGG
TTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAG
TACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAA
GAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCT
GGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTT
CTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTT
CTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAGG
TTGATCTGGTACCGGTGTGGGGTACGCAGCGTTGGGTGGCTATTCTTAGT
GCCGAATATCCTACTATTGCCTTTCATGCCTCCCTACAACATCCTTTTGG
AAAAAGGTGCGCTCATCAATCTATTTCGTCAGTTGGGCAAACTGCATT

BO09691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6501-PA 2025 Ngp-RA 1..888 17..904 4365 99.6 Plus
CG6501-PA 2025 Ngp-RA 885..931 902..948 210 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-RA 2233 CG6501-RA 128..1059 16..948 4580 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17567054..17567733 904..225 3355 99.6 Minus
2R 25286936 2R 17568118..17568329 227..16 1060 100 Minus
2R 25286936 2R 17566953..17566996 948..905 205 97.7 Minus
Blast to na_te.dros performed on 2015-02-02 11:51:08 has no hits.

BO09691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:03 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
Ngp-PA 1..931 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:41 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6501-PA 1..931 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:51 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 122..1059 10..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:02 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 122..1059 10..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:02 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17566953..17566994 907..948 97 <- Minus
2R 17567053..17567731 227..906 99 <- Minus
2R 17568119..17568335 10..226 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:51 Download gff for BO09691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13454458..13454499 907..948 97 <- Minus
arm_2R 13454558..13455236 227..906 99 <- Minus
arm_2R 13455624..13455840 10..226 98   Minus

BO09691.complete Sequence

2056 bp assembled on 2012-05-15

GenBank Submission: KX794310

> BO09691.complete
GAAGTTATCAGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCC
GGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCC
AAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAA
GCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAA
AGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATG
GCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTC
GCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGG
ATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTG
AACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTT
CGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGG
TTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAG
TACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAA
GAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCT
GGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTT
CTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTT
CTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAGG
TTGATCTGGTACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAGT
GCCGAATATCCTACTATTGCCTTCCATGCCTCCCTACAACATCCTTTTGG
AAAAGGTGCGCTCATCAATCTATTCCGTCAGTTGGGCAAACTGCATTTGG
ACAAAAAACAGATCAGCGTGGGCTTCATTGGGTATCCCAACGTGGGTAAA
TCTTCTGTTATTAATGCGCTACGATCAAAAAAGGTTTGCAAGGTAGCACC
AATTGCGGGGGAGACGAAAGTATGGCAGTATATAACGCTAATGAAACGCA
TCTTCTTGATCGATTGTCCTGGCGTGGTGTATCCCACCGCGGAGACTGAC
ACCGAGAAAGTGTTGAAGGGTGTGGTGCGGGTGGAGCTCGTCACAAATCC
TGAAGATTACGTAGACTCTCTGCTGAAACGCGTGCGTCCGGAGTACATTT
CAAAGAACTACAAAATTGAACACTGGAACACATCCACGCACTTTTTAGAA
CAGTTGGCTCAAAAGACCGGCAAGTTGCTAAAAGGCGGTGAACCGGACGT
TACGGTAACAGCCCGTATGGTGCTTAACGATTGGCAACGAGGCAAACTTC
CTTTCTACGTTCCACCCGAAGGATTCGCAGTTCCCAAATCCCAGGAGGGT
AAGGAGGAGGAAGTAGTTGCAGAGGATCCCAACGAAGATGCTAAATCCGA
GGCACCTACATTCGTCAGTGAGTCTGTAAAGAAGGCGCGCGAGTTTAAGC
AGATCCAAGATTTTCGAAAAATACGCGTGGGTCTTGAGTATGAGCAGGAA
GATGTGAAGGATCTTGATCACATAGATCTAGAGCTTTTAGAGCAACAGAA
GGCCGAGCGTGCGGCAAAGAAAAAGGCTCGCATCCACAACCTCGGTGAAG
AGGACGAGGAGTCTAGCGATGGAGCGGACGAGTTTTACTCGGAGGACGAG
TACAATGAGGACTTGCAACGCGTTGTGCACAAGAAGGCCAAGTCAAAGAA
GCCACAACAGCTGGCCATCACATCGTCTGGTAAATTCCGAGTGGCCAAAA
TACAACCTGGTGATTCGGATGGTGCTGGCAGCTCTGACGACGATGGACCC
AGCACTTCAAAGGCTCCTCGGTTGACTGCAAAGCAAAAACGCTCCCTGGA
GCGCAGTCAGAAACGCAAGAAGATTGGCAGCAACTTTTACGAGACGACAA
ATGTTAAGAATCGCAATAGAAACAAAAAGAAGGACGCGGCAAGCTTTCTA
GACCAT

BO09691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-RA 2025 CG6501-PA 1..2022 17..2038 10110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-RA 2233 CG6501-RA 128..2150 16..2038 10115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565862..17566996 2038..904 5675 100 Minus
2R 25286936 2R 17567051..17567733 907..225 3415 100 Minus
2R 25286936 2R 17568118..17568329 227..16 1060 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:56:45 has no hits.

BO09691.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:49 Download gff for BO09691.complete
Subject Subject Range Query Range Percent Splice Strand
ns2-RA 118..2139 17..2040 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:55 Download gff for BO09691.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 129..2150 17..2040 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:32 Download gff for BO09691.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 129..2150 17..2040 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:32 Download gff for BO09691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17565860..17566994 906..2040 99 <- Minus
2R 17567053..17567731 227..905 100 <- Minus
2R 17568119..17568328 17..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:55 Download gff for BO09691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13453365..13454499 906..2040 99 <- Minus
arm_2R 13454558..13455236 227..905 100 <- Minus
arm_2R 13455624..13455833 17..226 100   Minus

BO09691.pep Sequence

Translation from 16 to 2056

> BO09691.pep
MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY
RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ
KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG
PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD
WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK
PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI
NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET
KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD
SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR
MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV
SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA
KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA
ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR
KKIGSNFYETTNVKNRNRNKKKDAASFLDH

BO09691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-PA 674 CG6501-PA 1..674 1..674 3490 100 Plus
Ns1-PA 581 CG3983-PA 88..571 156..635 486 29.2 Plus
Ns3-PB 606 CG14788-PB 320..508 299..476 212 31.2 Plus
Ns3-PA 606 CG14788-PA 320..508 299..476 212 31.2 Plus
Ns4-PA 575 CG9320-PA 333..540 316..509 174 28.1 Plus