Clone Sequence Records
BO09691.3prime Sequence
936 bp (803 high quality bases) assembled on 2006-01-28
> BO09691.3prime
ATGGTCTAGAAAGCTTGCCGCGTCCTTCTTTTTGTTTCTATTGCGATTCT
TAACATTTGTCGTCTCGTAAAAGTTGCTGCCAATCTTCTTGCGTTTCTGA
CTGCGCTCCAGGGAGCGTTTTTGCTTTGCAGTCAACCGAGGAGCCTTTGA
AGTGCTGGGTCCATCGTCGTCAGAGCTGCCAGCACCATCCGAATCACCAG
GTTGTATTTTGGCCACTCGGAATTTACCAGACGATGTGATGGCCAGCTGT
TGTGGCTTCTTTGACTTGGCCTTCTTGTGCACAACGCGTTGCAAGTCCTC
ATTGTACTCGTCCTCCGAGTAAAACTCGTCCGCTCCATCGCTAGACTCCT
CGTCCTCTTCACCGAGGTTGTGGATGCGAGCCTTTTTCTTTGCCGCACGC
TCGGCCTTCTGTTGCTCTAAAAGCTCTAGATCTATGTGATCAAGATCCTT
CACATCTTCCTGCTCATACTCAAGACCCACGCGTATTTTTCGAAAATCTT
GGATCTGCTTAAACTCGCGCGCCTTCTTTACAGACTCACTGACGAATGTA
GGTGCCTCGGATTTAGCATCTTCGTTGGGATCCTCTGCAACTACTTCCTC
CTCCTTACCCTCCTGGGATTTGGGAACTGCGAATCCTTCGGGTGGAACGT
AGAAAGGAAGTTTGCCTCGTTGCCAATCGTTAAGCACCATACGGGCTGTT
ACCGTAACGTCCGGTTCACCGCCTTTTAGCAACTTGCCGGTCTTTTGAGC
CAACTGTTCTAAAAAGTGCGTGGATGTGTTCCAGTGTTCAATTTTGTAGT
TCTTTGAAATGTACTCCGGACGCACGCGTTTCAGCAGAGAGTCTACGTAA
TCTTCAGGATTTGTGACGAGCTCCACCCGCACCACACCCTTCAACACTTT
CTCGGTGTCAGTCTCCGCGGTGGGATACACAACGCC
BO09691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6501-PA | 2025 | Ngp-RA | 1105..2022 | 936..19 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns2-RA | 2233 | CG6501-RA | 1233..2150 | 936..19 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565862..17566779 | 19..936 | 4575 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:13:30 has no hits.
BO09691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:02 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ngp-PA | 1105..2025 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:40 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6501-PA | 1105..2025 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:49 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 1233..2153 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:19 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 1233..2153 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:19 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565858..17566779 | 15..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:49 Download gff for
BO09691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13453363..13454284 | 15..936 | 99 | | Plus |
BO09691.5prime Sequence
948 bp (869 high quality bases) assembled on 2006-01-28
> BO09691.5prime
GAAGTTATCAGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCC
GGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCC
AAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAA
GCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAA
AGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATG
GCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTC
GCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGG
ATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTG
AACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTT
CGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGG
TTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAG
TACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAA
GAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCT
GGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTT
CTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTT
CTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAGG
TTGATCTGGTACCGGTGTGGGGTACGCAGCGTTGGGTGGCTATTCTTAGT
GCCGAATATCCTACTATTGCCTTTCATGCCTCCCTACAACATCCTTTTGG
AAAAAGGTGCGCTCATCAATCTATTTCGTCAGTTGGGCAAACTGCATT
BO09691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6501-PA | 2025 | Ngp-RA | 1..888 | 17..904 | 4365 | 99.6 | Plus |
CG6501-PA | 2025 | Ngp-RA | 885..931 | 902..948 | 210 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns2-RA | 2233 | CG6501-RA | 128..1059 | 16..948 | 4580 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17567054..17567733 | 904..225 | 3355 | 99.6 | Minus |
2R | 25286936 | 2R | 17568118..17568329 | 227..16 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 17566953..17566996 | 948..905 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:51:08 has no hits.
BO09691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:03 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ngp-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:41 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6501-PA | 1..931 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:51 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 122..1059 | 10..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:02 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 122..1059 | 10..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:02 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17566953..17566994 | 907..948 | 97 | <- | Minus |
2R | 17567053..17567731 | 227..906 | 99 | <- | Minus |
2R | 17568119..17568335 | 10..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:51 Download gff for
BO09691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13454458..13454499 | 907..948 | 97 | <- | Minus |
arm_2R | 13454558..13455236 | 227..906 | 99 | <- | Minus |
arm_2R | 13455624..13455840 | 10..226 | 98 | | Minus |
BO09691.complete Sequence
2056 bp assembled on 2012-05-15
GenBank Submission: KX794310
> BO09691.complete
GAAGTTATCAGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCC
GGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCC
AAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAA
GCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAA
AGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATG
GCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTC
GCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGG
ATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTG
AACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTT
CGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGG
TTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAG
TACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAA
GAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCT
GGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTT
CTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTT
CTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAGG
TTGATCTGGTACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAGT
GCCGAATATCCTACTATTGCCTTCCATGCCTCCCTACAACATCCTTTTGG
AAAAGGTGCGCTCATCAATCTATTCCGTCAGTTGGGCAAACTGCATTTGG
ACAAAAAACAGATCAGCGTGGGCTTCATTGGGTATCCCAACGTGGGTAAA
TCTTCTGTTATTAATGCGCTACGATCAAAAAAGGTTTGCAAGGTAGCACC
AATTGCGGGGGAGACGAAAGTATGGCAGTATATAACGCTAATGAAACGCA
TCTTCTTGATCGATTGTCCTGGCGTGGTGTATCCCACCGCGGAGACTGAC
ACCGAGAAAGTGTTGAAGGGTGTGGTGCGGGTGGAGCTCGTCACAAATCC
TGAAGATTACGTAGACTCTCTGCTGAAACGCGTGCGTCCGGAGTACATTT
CAAAGAACTACAAAATTGAACACTGGAACACATCCACGCACTTTTTAGAA
CAGTTGGCTCAAAAGACCGGCAAGTTGCTAAAAGGCGGTGAACCGGACGT
TACGGTAACAGCCCGTATGGTGCTTAACGATTGGCAACGAGGCAAACTTC
CTTTCTACGTTCCACCCGAAGGATTCGCAGTTCCCAAATCCCAGGAGGGT
AAGGAGGAGGAAGTAGTTGCAGAGGATCCCAACGAAGATGCTAAATCCGA
GGCACCTACATTCGTCAGTGAGTCTGTAAAGAAGGCGCGCGAGTTTAAGC
AGATCCAAGATTTTCGAAAAATACGCGTGGGTCTTGAGTATGAGCAGGAA
GATGTGAAGGATCTTGATCACATAGATCTAGAGCTTTTAGAGCAACAGAA
GGCCGAGCGTGCGGCAAAGAAAAAGGCTCGCATCCACAACCTCGGTGAAG
AGGACGAGGAGTCTAGCGATGGAGCGGACGAGTTTTACTCGGAGGACGAG
TACAATGAGGACTTGCAACGCGTTGTGCACAAGAAGGCCAAGTCAAAGAA
GCCACAACAGCTGGCCATCACATCGTCTGGTAAATTCCGAGTGGCCAAAA
TACAACCTGGTGATTCGGATGGTGCTGGCAGCTCTGACGACGATGGACCC
AGCACTTCAAAGGCTCCTCGGTTGACTGCAAAGCAAAAACGCTCCCTGGA
GCGCAGTCAGAAACGCAAGAAGATTGGCAGCAACTTTTACGAGACGACAA
ATGTTAAGAATCGCAATAGAAACAAAAAGAAGGACGCGGCAAGCTTTCTA
GACCAT
BO09691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns2-RA | 2025 | CG6501-PA | 1..2022 | 17..2038 | 10110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns2-RA | 2233 | CG6501-RA | 128..2150 | 16..2038 | 10115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565862..17566996 | 2038..904 | 5675 | 100 | Minus |
2R | 25286936 | 2R | 17567051..17567733 | 907..225 | 3415 | 100 | Minus |
2R | 25286936 | 2R | 17568118..17568329 | 227..16 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:56:45 has no hits.
BO09691.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:49 Download gff for
BO09691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ns2-RA | 118..2139 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:55 Download gff for
BO09691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 129..2150 | 17..2040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:32 Download gff for
BO09691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ns2-RA | 129..2150 | 17..2040 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:32 Download gff for
BO09691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565860..17566994 | 906..2040 | 99 | <- | Minus |
2R | 17567053..17567731 | 227..905 | 100 | <- | Minus |
2R | 17568119..17568328 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:55 Download gff for
BO09691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13453365..13454499 | 906..2040 | 99 | <- | Minus |
arm_2R | 13454558..13455236 | 227..905 | 100 | <- | Minus |
arm_2R | 13455624..13455833 | 17..226 | 100 | | Minus |
BO09691.pep Sequence
Translation from 16 to 2056
> BO09691.pep
MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY
RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ
KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG
PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD
WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK
PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI
NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET
KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD
SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR
MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV
SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA
KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA
ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR
KKIGSNFYETTNVKNRNRNKKKDAASFLDH
BO09691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ns2-PA | 674 | CG6501-PA | 1..674 | 1..674 | 3490 | 100 | Plus |
Ns1-PA | 581 | CG3983-PA | 88..571 | 156..635 | 486 | 29.2 | Plus |
Ns3-PB | 606 | CG14788-PB | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns3-PA | 606 | CG14788-PA | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns4-PA | 575 | CG9320-PA | 333..540 | 316..509 | 174 | 28.1 | Plus |