Clone Sequence Records
BO09703.3prime Sequence
887 bp (843 high quality bases) assembled on 2006-01-28
> BO09703.3prime
ATGGTCTAGAAAGCTTGCTTCGTTGAAAAACCCGGGATTGAAGTAGAGTT
TCTTATTAAAGCCAAGATTATCATAGGCACCTGTCTGCATGGAACCCTTC
TTGGTGCGCTTATTACCCACGGCTTCGCTCGTCTTCTTTAGGATATCCTC
AAGGTCTGTGTCGTGGGCATGATCGGCCATCACTTGGCAAAACTTCTGGA
TGTACCAGCTGCCCGTGTCGAGATCGCGGTGGGTAACATAGCCCGGCGTA
TTAGCATAGCAGACCAGAGTGTCGGCAAGACTTGGCACATTGGTGCTCGG
GCTGGGTATGCCCTCCGTCTGGGTGTCAGGCCACTTCTCCTCTTGCGCCG
TATACACTGGCTCCATGAGATTGCCTTGATTCTTTGGATGGCCCAAATCA
TATTCATCGCCGCGGCAAAAGGGAAACATAAGCACCTTCGGCTTGTTCAC
CAAATAAGGACATTTGGCCGTCTGGAAATGGTCCTTGATCTTCTGCATAT
CGACCACAGATCCATCGCAAAACTCCACCTTCTCTTTTCCCTCCACACTG
TTGCCGTGTGTCATCAGTACCATTACGAAACACTCGGTATTCTGCACATA
CGACGAGGAGGTCACCATTGTCAGAAGTTTAAAGAACTGATCCTGATTCA
CGTTCCCATAGGGGAAAATCGTAAAATTCAGTTCTTGAAACAAGTGTATC
AACGACTTGCTGTCCTTTTCGGCTCCGATCCGTCGACGGTTTTGATCCGG
ATAGTCCATTATGTTAACCATTAGCAAAACGCCTCGGTTGAAACGTGATT
GCATCTTATATGTGCCCAATATGGCACTATCCCCACCATGTATCTTTTTC
GATTTTTTTACCTCGGGACCCGTCACGACACCCACAT
BO09703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8091-PA | 1353 | Nc-RA | 499..1350 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dronc-RA | 2015 | CG8091-RA | 891..1759 | 887..19 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9969878..9970746 | 887..19 | 4285 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:27:55 has no hits.
BO09703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:18:18 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:58 Download gff for
BO09703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8091-PA | 482..1353 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:27:20 Download gff for
BO09703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 891..1764 | 11..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:02 Download gff for
BO09703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dronc-RA | 891..1764 | 11..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:02 Download gff for
BO09703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9969878..9970751 | 11..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:27:20 Download gff for
BO09703.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9962978..9963851 | 11..887 | 99 | | Minus |
BO09703.5prime Sequence
936 bp (889 high quality bases) assembled on 2006-01-28
> BO09703.5prime
GAAGTTATCAGTCGACATGCAGCCGCCGGAGCTCGAGATTGGAATGCCGA
AGAGGCATCGCGAGCATATACGCAAGAATCTGAATATACTGGTTGAATGG
ACGAACTACGAGCGTCTGGCCATGGAGTGCGTGCAACAGGGCATCCTAAC
CGTTCAGATGCTAAGAAATACGCAGGATCTCAATGGCAAGCCATTCAACA
TGGACGAGAAGGATGTGCGTGTGGAGCAGCATCGTAGGCTCCTATTGAAG
ATCACCCAGCGTGGTCCCACCGCCTATAACCTGCTGATCAATGCACTGCG
CAATATCAATTGTCTGGATGCGGCCGTTCTATTGGAATCCGTCGATGAGT
CCGATTCAAGGCCACCCTTTATCTCGCTAAACGAACGGAGAACCAGCCGG
AAGTCGGCCGATATTGTGGACACACCCTCACCCGAAGCCTCCGAAGGACC
CTGCGTTAGCAAGCTCCGGAATGAGCCGCTGGGAGCACTCACCCCTTATG
TGGGTGTCGTTGACGGTCCCGAGGTAAAAAAATCGAAAAAGATACATGGT
GGGGATAGTGCCATATTGGGCACATATAAGATGCAATCACGTTTCAACCG
AGGCGTTTTGCTAATGGTTAACATAATGGACTATCCGGATCAAAACCGTC
GACGGATCGGAGCCGAAAAGGACAGCAAGTCGTTGATACACTTGTTTCAA
GAACTGAATTTTACGATTTTCCCCTATGGGAACGTGAATCAGGATCAGTT
CTTTAAACTTCTGACAATGGTGACCTCCTCGTCGTATGTGCAGAATACCG
AGTGTTTCGTAATGGTACTGATGACACACGGCAACAGTGTGGAGGGAAAA
GAGAAGGTGGAGTTTTGCGATGGATCTGTGGTCGATATGCAGAAGATCAA
GGACCATTTCCAGACGGCCAAATGTCCTTTATTGGG
BO09703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8091-PA | 1353 | Nc-RA | 1..913 | 17..929 | 4565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dronc-RA | 2015 | CG8091-RA | 410..1322 | 17..929 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9969841..9970309 | 461..929 | 2345 | 100 | Plus |
| 3L | 28110227 | 3L | 9968888..9969334 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:14:49 has no hits.
BO09703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:18:19 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:24:59 Download gff for
BO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8091-PA | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:42 Download gff for
BO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 402..1328 | 6..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:45 Download gff for
BO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dronc-RA | 402..1328 | 6..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:45 Download gff for
BO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9968880..9969334 | 6..463 | 99 | -> | Plus |
| 3L | 9969844..9970315 | 464..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:42 Download gff for
BO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9961980..9962434 | 6..463 | 99 | -> | Plus |
| arm_3L | 9962944..9963415 | 464..936 | 99 | | Plus |
BO09703.complete Sequence
1384 bp (1384 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ631553
> BO09703.complete
GAAGTTATCAGTCGACATGCAGCCGCCGGAGCTCGAGATTGGAATGCCGA
AGAGGCATCGCGAGCATATACGCAAGAATCTGAATATACTGGTTGAATGG
ACGAACTACGAGCGTCTGGCCATGGAGTGCGTGCAACAGGGCATCCTAAC
CGTTCAGATGCTAAGAAATACGCAGGATCTCAATGGCAAGCCATTCAACA
TGGACGAGAAGGATGTGCGTGTGGAGCAGCATCGTAGGCTCCTATTGAAG
ATCACCCAGCGTGGTCCCACCGCCTATAACCTGCTGATCAATGCACTGCG
CAATATCAATTGTCTGGATGCGGCCGTTCTATTGGAATCCGTCGATGAGT
CCGATTCAAGGCCACCCTTTATCTCGCTAAACGAACGGAGAACCAGCCGG
AAGTCGGCCGATATTGTGGACACACCCTCACCCGAAGCCTCCGAAGGACC
CTGCGTTAGCAAGCTCCGGAATGAGCCGCTGGGAGCACTCACCCCTTATG
TGGGTGTCGTTGACGGTCCCGAGGTAAAAAAATCGAAAAAGATACATGGT
GGGGATAGTGCCATATTGGGCACATATAAGATGCAATCACGTTTCAACCG
AGGCGTTTTGCTAATGGTTAACATAATGGACTATCCGGATCAAAACCGTC
GACGGATCGGAGCCGAAAAGGACAGCAAGTCGTTGATACACTTGTTTCAA
GAACTGAATTTTACGATTTTCCCCTATGGGAACGTGAATCAGGATCAGTT
CTTTAAACTTCTGACAATGGTGACCTCCTCGTCGTATGTGCAGAATACCG
AGTGTTTCGTAATGGTACTGATGACACACGGCAACAGTGTGGAGGGAAAA
GAGAAGGTGGAGTTTTGCGATGGATCTGTGGTCGATATGCAGAAGATCAA
GGACCATTTCCAGACGGCCAAATGTCCTTATTTGGTGAACAAGCCGAAGG
TGCTTATGTTTCCCTTTTGCCGCGGCGATGAATATGATTTGGGCCATCCA
AAGAATCAAGGCAATCTCATGGAGCCAGTGTATACGGCGCAAGAGGAGAA
GTGGCCTGACACCCAGACGGAGGGCATACCCAGCCCGAGCACCAATGTGC
CAAGTCTTGCCGACACTCTGGTCTGCTATGCTAATACGCCGGGCTATGTT
ACCCACCGCGATCTCGACACGGGCAGCTGGTACATCCAGAAGTTTTGCCA
AGTGATGGCCGATCATGCCCACGACACAGACCTTGAGGATATCCTAAAGA
AGACGAGCGAAGCCGTGGGTAATAAGCGCACCAAGAAGGGTTCCATGCAG
ACAGGTGCCTATGATAATCTTGGCTTTAATAAGAAACTCTACTTCAATCC
CGGGTTTTTCAACGAAGCAAGCTTTCTAGACCAT
BO09703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dronc-RA | 1353 | CG8091-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dronc-RA | 2015 | CG8091-RA | 410..1759 | 17..1366 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9969841..9970746 | 461..1366 | 4530 | 100 | Plus |
| 3L | 28110227 | 3L | 9968888..9969334 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:37 has no hits.
BO09703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:53 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 1..1353 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:14 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 438..1800 | 6..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:53 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 410..1759 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:53 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc-RA | 438..1800 | 6..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:21 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dronc-RA | 410..1759 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:21 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9968888..9969334 | 17..463 | 100 | -> | Plus |
| 3L | 9969844..9970746 | 464..1368 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:53 Download gff for
BO09703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9961988..9962434 | 17..463 | 100 | -> | Plus |
| arm_3L | 9962944..9963846 | 464..1368 | 99 | | Plus |
BO09703.pep Sequence
Translation from 16 to 1384
> BO09703.pep
MQPPELEIGMPKRHREHIRKNLNILVEWTNYERLAMECVQQGILTVQMLR
NTQDLNGKPFNMDEKDVRVEQHRRLLLKITQRGPTAYNLLINALRNINCL
DAAVLLESVDESDSRPPFISLNERRTSRKSADIVDTPSPEASEGPCVSKL
RNEPLGALTPYVGVVDGPEVKKSKKIHGGDSAILGTYKMQSRFNRGVLLM
VNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLT
MVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFCDGSVVDMQKIKDHFQT
AKCPYLVNKPKVLMFPFCRGDEYDLGHPKNQGNLMEPVYTAQEEKWPDTQ
TEGIPSPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQVMADH
AHDTDLEDILKKTSEAVGNKRTKKGSMQTGAYDNLGFNKKLYFNPGFFNE
ASFLDH
BO09703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dronc-PA | 450 | CG8091-PA | 1..450 | 1..450 | 2389 | 100 | Plus |
| Drice-PA | 339 | CG7788-PA | 86..288 | 187..410 | 199 | 24 | Plus |
| Dcp-1-PA | 323 | CG5370-PA | 74..280 | 191..417 | 193 | 24.9 | Plus |
| Dredd-PD | 488 | CG7486-PD | 254..486 | 191..445 | 161 | 25.2 | Plus |
| Dredd-PG | 440 | CG7486-PG | 200..438 | 191..445 | 155 | 24.6 | Plus |
