Clone BO09706 Report

Search the DGRC for BO09706

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG17068-RA
Protein status:BO09706.pep: validated full length
Sequenced Size:2116

Clone Sequence Records

BO09706.3prime Sequence

889 bp (811 high quality bases) assembled on 2006-01-28

> BO09706.3prime
ATGGTCTAGAAAGCTTGCGTCGACCAGGTGACGGCCATGGTCCTGCGGTG
TGGAGAAGATAATTGCGTAGATAAGGCCGTCGCGAACCGATTCGGTGGGG
TTGCCCACGTTGAACATGAACTTCACGCGATTGCAGTTGGCATCGGGCAC
ACAGGAGTACATGGGATACCAGCCGGTCTTGTTGAACACCACGTAGATCT
TGTAGATCTGGTTTCGGTATATGTACACCGGTCGATCGAACGTGATGTCC
AGCAGCGAATCGTAACGCACGCGTGCCGTGCAGTGCGTGTATGTGATGCG
TGAGCCGTGCATGTCCTGGATGTGGGCGTACAGCACCTCGGTGTATCGTT
CCGTAAAACCGGCAGAAGTCATCAGCTCGCCGCACAGCACGCGCGTGGGC
ACTTGGACGCCCAGGATCCAAATGTTGGTGTCCACCTGGAACGTTACGCC
CGCATCCGTGACGCTGGTGTTGCGGAAGTCAAATTGCCGGGTAAGGGAGC
GCATACAGTACGCGCGCACCATGTCGTTGTGCGAATTTCCAGCTGCGGAT
CCAGCTCCTCCAGCTGCAGCGCCGCCAGCGGGCGCCGGTGCGCCTCGATC
GCCGCCATCATCATCATTGGCGGGCGCTGGGACTGGCGCTCCGCTCTCGT
AGCCCTCGCCGAAGCAGCGCAGTGGTGCTGGCGCAGGTGCGGCATCCGGT
GGGACGCCCACCGGTTCCGGCGGGCGGATGACCAATTCCTCGCCTGCGAA
GCCGAATCCCGTGCCCACGGATCCGAAACGGGGCGCAATGCCCATCATCA
TACCGCCGCCGGAGGGTCCTCCGCTGCGAACTGCCGGTCCCGGTCCCCGG
GAACAGACGCCCGAGGGAGCGGCTCCAGTGCGATACGAG

BO09706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-PA 2085 CG17068-RA 1212..2082 889..19 4305 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-RA 2785 CG17068-RA 1352..2222 889..19 4325 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20248872..20249742 19..889 4325 99.8 Plus
Blast to na_te.dros performed on 2015-02-02 18:25:11 has no hits.

BO09706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:25 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-PA 1212..2085 16..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:06 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-PA 1212..2085 16..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:30:42 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 1352..2226 15..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:44 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 1352..2226 15..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:44 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20248868..20249742 15..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:30:42 Download gff for BO09706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20119942..20120816 15..889 99   Plus

BO09706.5prime Sequence

906 bp (833 high quality bases) assembled on 2006-01-28

> BO09706.5prime
GAAGTTATCAGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCGCCCACGGCTGCCTCCCCGCCGCTGGACGTGGCTTCCGGCTCCGA
CGACCT

BO09706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-PA 2085 CG17068-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-RA 2785 CG17068-RA 141..1030 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20250064..20250953 906..17 4450 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:21 has no hits.

BO09706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:26 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:07 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:23 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 135..1030 9..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:15 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 135..1030 9..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:15 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20250064..20250959 9..906 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:23 Download gff for BO09706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20121138..20122033 9..906 99   Minus

BO09706.complete Sequence

2116 bp assembled on 2007-10-05

GenBank Submission: FJ631554

> BO09706.complete
GAAGTTATCAGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCGCCCACGGCTGCCTCCCCGCCGCTGGACGTGGCTTCCGGCTCCGA
CGACCTGGTAATCATCGATAGCGACGCTTCGGCCGATGCCGCCGCCAACA
TGATTAACATCATGGACGCCCAGCGCACCATTCTCGATGGCGCCATGCTC
AGGCAGGCGGTCAAAAAGATTCGCTTTCTCACCATGACGCCGCAGCAGTT
CGCGGAGGGACCGGCCCGTTCCAAGCTGCTGCAGCAGCACGAGGCCCTCT
CCATCCTGATTAAGATCTCCAGTCCCTCGCTCAACGATTGTCACATGCCC
GAAGGCTTCTGCGTGTCGCGGAGCACGCGCAACTTCTACGAGTCGGGCCA
CCGACACGCCCAGAGAGAATTGTCCTCCTCGTATCGCACTGGAGCCGCTC
CCTCGGGCGTCTGTTTCCCGGGACCGGGACCGGCAGTTCGCAGCGGAGGA
CCCTCCGGCGGCGGTATGATGATGGGCATTGCGCCCCGTTTCGGATCCGT
GGGCACGGGATTCGGCTTCGCAGGCGAGGAATTGGTCATCCGCCCGCCGG
AACCGGTGGGCGTCCCACCGGATGCCGCACCTGCGCCAGCACCACTGCGC
TGCTTCGGCGAGGGCTACGAGAGCGGAGCGCCAGTCCCAGCGCCCGCCAA
TGATGATGATGGCGGCGATCGAGGCGCACCGGCGCCCGCTGGCGGCGCTG
CAGCTGGAGGAGCTGGATCCGCAGCTGGAAATTCGCACAACGACATGGTG
CGCGCGTACTGTATGCGCTCCCTTACCCGGCAATTTGACTTCCGCAACAC
CAGCGTCACGGATGCGGGCGTAACGTTCCAGGTGGACACCAACATTTGGA
TCCTGGGCGTCCAAGTGCCCACGCGCGTGCTGTGCGGCGAGCTGATGACT
TCTGCCGGTTTTACGGAACGATACACCGAGGTGCTGTACGCCCACATCCA
GGACATGCACGGCTCACGCATCACATACACGCACTGCACGGCACGCGTGC
GTTACGATTCGCTGCTGGACATCACGTTCGATCGACCGGTGTACATATAC
CGAAACCAGATCTACAAGATCTACGTGGTGTTCAACAAGACCGGCTGGTA
TCCCATGTACTCCTGTGTGCCCGATGCCAACTGCAATCGCGTGAAGTTCA
TGTTCAACGTGGGCAACCCCACCGAATCGGTTCGCGACGGCCTTATCTAC
GCAATTATCTTCTCCACACCGCAGGACCATGGCCGTCACCTGGTCGACGC
AAGCTTTCTAGACCAT

BO09706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-RA 2085 CG17068-PA 1..2082 17..2098 10410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-RA 2785 CG17068-RA 141..2222 17..2098 10410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20248872..20250953 2098..17 10410 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:57:36 has no hits.

BO09706.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:00 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 1..2085 17..2101 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:54 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 484..2575 9..2102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:48 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 141..2222 17..2100 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:00 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 484..2575 9..2102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:08 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
CG17068-RA 141..2222 17..2100 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:08 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
X 20248869..20250953 17..2100 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:48 Download gff for BO09706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20119943..20122027 17..2100 99   Minus

BO09706.pep Sequence

Translation from 16 to 2116

> BO09706.pep
MDIDWQNGLTELKDRGQYLLHSEKWADCRFLVGSSPTQRLIAGHKLLLAM
ASPVFERMFYGNLPDKTDPIVIPDVQPEAFEAMLEYIYTDRITIGSFDKA
CELCYVAKKYMLPHVVTRCTHFLWADLSPKNACRAYEFAKLFDEPRLMQS
SMDLIAANTREVLSDPSFLDIEVSTLMAILDQNRLNIDSELDLFNCLLKF
ASERGILNESGQEETASGGQVLTKESPDNAAGHVLVEEIKMEPDVAAMVQ
HMHQDDEADSFETDAGMASTSSAAAAAAAAPTAASPPLDVASGSDDLVII
DSDASADAAANMINIMDAQRTILDGAMLRQAVKKIRFLTMTPQQFAEGPA
RSKLLQQHEALSILIKISSPSLNDCHMPEGFCVSRSTRNFYESGHRHAQR
ELSSSYRTGAAPSGVCFPGPGPAVRSGGPSGGGMMMGIAPRFGSVGTGFG
FAGEELVIRPPEPVGVPPDAAPAPAPLRCFGEGYESGAPVPAPANDDDGG
DRGAPAPAGGAAAGGAGSAAGNSHNDMVRAYCMRSLTRQFDFRNTSVTDA
GVTFQVDTNIWILGVQVPTRVLCGELMTSAGFTERYTEVLYAHIQDMHGS
RITYTHCTARVRYDSLLDITFDRPVYIYRNQIYKIYVVFNKTGWYPMYSC
VPDANCNRVKFMFNVGNPTESVRDGLIYAIIFSTPQDHGRHLVDASFLDH

BO09706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17068-PA 694 CG17068-PA 1..694 1..694 3645 100 Plus
lute-PA 677 CG5319-PA 188..412 2..222 324 33.8 Plus
lute-PC 727 CG43226-PC 238..462 2..222 324 33.8 Plus
lute-PB 727 CG43226-PB 238..462 2..222 324 33.8 Plus
lute-PD 735 CG43226-PD 188..412 2..222 324 33.8 Plus