Clone Sequence Records
BO09706.3prime Sequence
889 bp (811 high quality bases) assembled on 2006-01-28
> BO09706.3prime
ATGGTCTAGAAAGCTTGCGTCGACCAGGTGACGGCCATGGTCCTGCGGTG
TGGAGAAGATAATTGCGTAGATAAGGCCGTCGCGAACCGATTCGGTGGGG
TTGCCCACGTTGAACATGAACTTCACGCGATTGCAGTTGGCATCGGGCAC
ACAGGAGTACATGGGATACCAGCCGGTCTTGTTGAACACCACGTAGATCT
TGTAGATCTGGTTTCGGTATATGTACACCGGTCGATCGAACGTGATGTCC
AGCAGCGAATCGTAACGCACGCGTGCCGTGCAGTGCGTGTATGTGATGCG
TGAGCCGTGCATGTCCTGGATGTGGGCGTACAGCACCTCGGTGTATCGTT
CCGTAAAACCGGCAGAAGTCATCAGCTCGCCGCACAGCACGCGCGTGGGC
ACTTGGACGCCCAGGATCCAAATGTTGGTGTCCACCTGGAACGTTACGCC
CGCATCCGTGACGCTGGTGTTGCGGAAGTCAAATTGCCGGGTAAGGGAGC
GCATACAGTACGCGCGCACCATGTCGTTGTGCGAATTTCCAGCTGCGGAT
CCAGCTCCTCCAGCTGCAGCGCCGCCAGCGGGCGCCGGTGCGCCTCGATC
GCCGCCATCATCATCATTGGCGGGCGCTGGGACTGGCGCTCCGCTCTCGT
AGCCCTCGCCGAAGCAGCGCAGTGGTGCTGGCGCAGGTGCGGCATCCGGT
GGGACGCCCACCGGTTCCGGCGGGCGGATGACCAATTCCTCGCCTGCGAA
GCCGAATCCCGTGCCCACGGATCCGAAACGGGGCGCAATGCCCATCATCA
TACCGCCGCCGGAGGGTCCTCCGCTGCGAACTGCCGGTCCCGGTCCCCGG
GAACAGACGCCCGAGGGAGCGGCTCCAGTGCGATACGAG
BO09706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-PA | 2085 | CG17068-RA | 1212..2082 | 889..19 | 4305 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-RA | 2785 | CG17068-RA | 1352..2222 | 889..19 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20248872..20249742 | 19..889 | 4325 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:25:11 has no hits.
BO09706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:25 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-PA | 1212..2085 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:06 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-PA | 1212..2085 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:30:42 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 1352..2226 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:44 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 1352..2226 | 15..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:44 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20248868..20249742 | 15..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:30:42 Download gff for
BO09706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20119942..20120816 | 15..889 | 99 | | Plus |
BO09706.5prime Sequence
906 bp (833 high quality bases) assembled on 2006-01-28
> BO09706.5prime
GAAGTTATCAGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCGCCCACGGCTGCCTCCCCGCCGCTGGACGTGGCTTCCGGCTCCGA
CGACCT
BO09706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-PA | 2085 | CG17068-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-RA | 2785 | CG17068-RA | 141..1030 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20250064..20250953 | 906..17 | 4450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:19:21 has no hits.
BO09706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:26 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:07 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:23 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 135..1030 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:15 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 135..1030 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:15 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20250064..20250959 | 9..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:23 Download gff for
BO09706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20121138..20122033 | 9..906 | 99 | | Minus |
BO09706.complete Sequence
2116 bp assembled on 2007-10-05
GenBank Submission: FJ631554
> BO09706.complete
GAAGTTATCAGTCGACATGGACATCGACTGGCAAAACGGCCTCACCGAGC
TGAAGGATCGGGGCCAGTACCTGCTCCACTCGGAGAAGTGGGCCGACTGC
CGCTTTCTGGTGGGTTCTTCGCCCACCCAGCGGCTCATTGCCGGCCACAA
GCTGCTACTGGCCATGGCTTCGCCGGTGTTCGAGCGAATGTTCTATGGCA
ACCTGCCCGATAAGACGGACCCCATCGTCATTCCGGACGTGCAGCCGGAG
GCGTTCGAGGCGATGCTGGAGTACATCTACACGGACCGCATCACCATTGG
GTCCTTCGACAAGGCCTGCGAGCTGTGCTACGTGGCCAAGAAGTACATGC
TGCCCCACGTGGTCACGCGCTGCACCCATTTCCTTTGGGCTGATCTTAGT
CCGAAAAACGCGTGCCGGGCGTACGAGTTTGCCAAGCTGTTCGATGAGCC
GCGCCTCATGCAAAGCAGCATGGATCTGATCGCGGCCAACACGCGCGAGG
TTCTGTCCGATCCCAGCTTCCTGGACATCGAGGTCTCCACCCTGATGGCC
ATTCTTGACCAGAATCGCCTGAACATCGACTCCGAGCTGGATTTGTTCAA
CTGCCTGCTGAAGTTTGCCAGTGAGCGGGGCATCCTGAACGAGTCCGGCC
AGGAAGAGACTGCTAGCGGAGGTCAGGTGCTGACCAAGGAATCGCCCGAC
AATGCTGCCGGCCATGTGCTGGTCGAAGAGATCAAGATGGAGCCCGATGT
GGCGGCCATGGTGCAGCACATGCACCAGGACGACGAGGCTGACAGCTTCG
AAACGGACGCTGGGATGGCTTCCACTTCCTCTGCGGCTGCCGCGGCTGCA
GCTGCGCCCACGGCTGCCTCCCCGCCGCTGGACGTGGCTTCCGGCTCCGA
CGACCTGGTAATCATCGATAGCGACGCTTCGGCCGATGCCGCCGCCAACA
TGATTAACATCATGGACGCCCAGCGCACCATTCTCGATGGCGCCATGCTC
AGGCAGGCGGTCAAAAAGATTCGCTTTCTCACCATGACGCCGCAGCAGTT
CGCGGAGGGACCGGCCCGTTCCAAGCTGCTGCAGCAGCACGAGGCCCTCT
CCATCCTGATTAAGATCTCCAGTCCCTCGCTCAACGATTGTCACATGCCC
GAAGGCTTCTGCGTGTCGCGGAGCACGCGCAACTTCTACGAGTCGGGCCA
CCGACACGCCCAGAGAGAATTGTCCTCCTCGTATCGCACTGGAGCCGCTC
CCTCGGGCGTCTGTTTCCCGGGACCGGGACCGGCAGTTCGCAGCGGAGGA
CCCTCCGGCGGCGGTATGATGATGGGCATTGCGCCCCGTTTCGGATCCGT
GGGCACGGGATTCGGCTTCGCAGGCGAGGAATTGGTCATCCGCCCGCCGG
AACCGGTGGGCGTCCCACCGGATGCCGCACCTGCGCCAGCACCACTGCGC
TGCTTCGGCGAGGGCTACGAGAGCGGAGCGCCAGTCCCAGCGCCCGCCAA
TGATGATGATGGCGGCGATCGAGGCGCACCGGCGCCCGCTGGCGGCGCTG
CAGCTGGAGGAGCTGGATCCGCAGCTGGAAATTCGCACAACGACATGGTG
CGCGCGTACTGTATGCGCTCCCTTACCCGGCAATTTGACTTCCGCAACAC
CAGCGTCACGGATGCGGGCGTAACGTTCCAGGTGGACACCAACATTTGGA
TCCTGGGCGTCCAAGTGCCCACGCGCGTGCTGTGCGGCGAGCTGATGACT
TCTGCCGGTTTTACGGAACGATACACCGAGGTGCTGTACGCCCACATCCA
GGACATGCACGGCTCACGCATCACATACACGCACTGCACGGCACGCGTGC
GTTACGATTCGCTGCTGGACATCACGTTCGATCGACCGGTGTACATATAC
CGAAACCAGATCTACAAGATCTACGTGGTGTTCAACAAGACCGGCTGGTA
TCCCATGTACTCCTGTGTGCCCGATGCCAACTGCAATCGCGTGAAGTTCA
TGTTCAACGTGGGCAACCCCACCGAATCGGTTCGCGACGGCCTTATCTAC
GCAATTATCTTCTCCACACCGCAGGACCATGGCCGTCACCTGGTCGACGC
AAGCTTTCTAGACCAT
BO09706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-RA | 2085 | CG17068-PA | 1..2082 | 17..2098 | 10410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-RA | 2785 | CG17068-RA | 141..2222 | 17..2098 | 10410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20248872..20250953 | 2098..17 | 10410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:57:36 has no hits.
BO09706.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:00 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 1..2085 | 17..2101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:54 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 484..2575 | 9..2102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:48 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 141..2222 | 17..2100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:00 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 484..2575 | 9..2102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:08 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17068-RA | 141..2222 | 17..2100 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:08 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20248869..20250953 | 17..2100 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:48 Download gff for
BO09706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20119943..20122027 | 17..2100 | 99 | | Minus |
BO09706.pep Sequence
Translation from 16 to 2116
> BO09706.pep
MDIDWQNGLTELKDRGQYLLHSEKWADCRFLVGSSPTQRLIAGHKLLLAM
ASPVFERMFYGNLPDKTDPIVIPDVQPEAFEAMLEYIYTDRITIGSFDKA
CELCYVAKKYMLPHVVTRCTHFLWADLSPKNACRAYEFAKLFDEPRLMQS
SMDLIAANTREVLSDPSFLDIEVSTLMAILDQNRLNIDSELDLFNCLLKF
ASERGILNESGQEETASGGQVLTKESPDNAAGHVLVEEIKMEPDVAAMVQ
HMHQDDEADSFETDAGMASTSSAAAAAAAAPTAASPPLDVASGSDDLVII
DSDASADAAANMINIMDAQRTILDGAMLRQAVKKIRFLTMTPQQFAEGPA
RSKLLQQHEALSILIKISSPSLNDCHMPEGFCVSRSTRNFYESGHRHAQR
ELSSSYRTGAAPSGVCFPGPGPAVRSGGPSGGGMMMGIAPRFGSVGTGFG
FAGEELVIRPPEPVGVPPDAAPAPAPLRCFGEGYESGAPVPAPANDDDGG
DRGAPAPAGGAAAGGAGSAAGNSHNDMVRAYCMRSLTRQFDFRNTSVTDA
GVTFQVDTNIWILGVQVPTRVLCGELMTSAGFTERYTEVLYAHIQDMHGS
RITYTHCTARVRYDSLLDITFDRPVYIYRNQIYKIYVVFNKTGWYPMYSC
VPDANCNRVKFMFNVGNPTESVRDGLIYAIIFSTPQDHGRHLVDASFLDH
BO09706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17068-PA | 694 | CG17068-PA | 1..694 | 1..694 | 3645 | 100 | Plus |
lute-PA | 677 | CG5319-PA | 188..412 | 2..222 | 324 | 33.8 | Plus |
lute-PC | 727 | CG43226-PC | 238..462 | 2..222 | 324 | 33.8 | Plus |
lute-PB | 727 | CG43226-PB | 238..462 | 2..222 | 324 | 33.8 | Plus |
lute-PD | 735 | CG43226-PD | 188..412 | 2..222 | 324 | 33.8 | Plus |