Clone Sequence Records
BO09713.3prime Sequence
891 bp (849 high quality bases) assembled on 2006-01-28
> BO09713.3prime
ATGGTCTAGAAAGCTTGCGGTCTTCTGTTTGCCCTGCTTACAGAACTCCT
TGTATGCCCGCTCGGTTTCCTCGTCCATTTCCGCGTCGATTTCTAGGTCG
GCACCATCCCCATCAAAGTCATCATCACCATCATTATCCCCGCCGGCCAG
AAAATCGGTCTCCTCGGCAGTCAATTCGCGGCCATCAGGTCCGTAGAAGA
CGGGCTCATCGCTCAGGCGCGGCGGCTCCTTCACTGTATCTTCATCGTCT
CCCAGAGCGTTCGACACCTTCCTGCCCCAGTTGTTCTGCTGCAGGGCAAT
TACACTTGCCGCCATGGGGTACTTGCCCGGCGACTTCAGCTCGATCGCCT
GCAGGGCGGTGATGATCTCCTGTATGTCCTTGGGGCAATCGGCTGTCAGA
TCATATCCAGCCAGCTTGAGGGTCTGGCACAGGCAGCGAACATTTTCGTT
GCTCTCGCTGGCCAGCAGCTTACTCAGCGAATATACAATATTCACAGCGA
TCAACTGGATGCGCGAGTCGTCGTCGCCGCGCAACTGCATGTACAGCTCG
GCCAGAAAGAGGGCAGTCTCGCGAACCTTCTGCTGCTCGTTGGAGCGCAT
GTACTTGGTCACTTCCTCCTGGTGGTAGTCAAGCTTGCACTTGAGCAGCG
TGTGGAACAGCGAGTCCGGCTTCGAGTTGAGCATGTGCAGCAGGTTGTAC
AGCTTGGCGCCCATGTACCGGAAGTTCGGCTGCTCGATCGACTTCTCGAA
GATGTCCTCCATGGCGATGGAGAGCACGAATTGGTTGTTCTCCATGCCAT
CGAAAATGGTCAGGAAGCGTGATGCAATCGAATCAATTGGCCCGGATTCT
GGTAAGGCAATGTATGACTGTATCAAGATACTCCAGTGCTA
BO09713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-PA | 1680 | CG8963-RA | 860..1677 | 836..19 | 4090 | 100 | Minus |
| CG8963-PB | 1680 | CG8963-RB | 860..1677 | 836..19 | 4090 | 100 | Minus |
| CG8963-PA | 1680 | CG8963-RA | 803..841 | 891..853 | 195 | 100 | Minus |
| CG8963-PB | 1680 | CG8963-RB | 803..841 | 891..853 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 2550 | CG8963-RC | 1053..1927 | 891..19 | 4325 | 99.8 | Minus |
| CG8963-RE | 2516 | CG8963-RE | 1019..1893 | 891..19 | 4325 | 99.8 | Minus |
| CG8963-RB | 2753 | CG8963-RB | 1136..2010 | 891..19 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17016969..17017803 | 19..852 | 4125 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17018068..17018106 | 853..891 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:51:57 has no hits.
BO09713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:39 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-PA | 804..1680 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:23 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-PB | 804..1680 | 18..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:22 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 1137..2010 | 19..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:25 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 1137..2010 | 19..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:25 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17016969..17017799 | 19..848 | 99 | <- | Plus |
| 2R | 17018063..17018105 | 849..890 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:22 Download gff for
BO09713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12904474..12905304 | 19..848 | 99 | <- | Plus |
| arm_2R | 12905568..12905610 | 849..890 | 97 | | Plus |
BO09713.5prime Sequence
950 bp (854 high quality bases) assembled on 2006-01-28
> BO09713.5prime
GAAGTTATCAGTCGACATGTCATGCCGCGCCCCCTTCCAGCCCGACGATC
AGTATGAGCAGCTGCGCCGGCCGAATGTCGGCGGAGCAGGCGGAGTGGCC
ATGCCGGGACTGGATCAGCAGGCGCATCTCTTTGGGGAGTACGCCGGAGC
GCAGGCGTACGGTCAGGTGGTTGGCAATTTTCCTGTGCAGGCCATGCAAC
CCCAGGCGCAGACTCTGTCCGATGCGTCCAATCTGTCGGCCACGGCCACA
ATTTTCATCCCTCGAGGAGCTGCTCCCCCGCAGCAGCAGTCGCGACATCA
GCAATACCAGCAGGCTGGTGGAGCCGGTGGAGGAGCTCCTTATGGCCAAC
AGCAGCCGCGCTATGTGAATGGTTTTAAGCATCACCATCAGCAGCACCAC
CAGCAGCCGCACTACAACCATCATCACAATCATCAGCAGAAGTTCAACAA
CGATATGCAGAAGCTAACGAATTCCGTGCAGAATCGCCTGCACCTGAATA
GCCAGCAGGGCTCAGCCGGCAACTACTATCAGCAGCAGCAGGTACACCAA
AACACACACCACCACCAACAACACCAGCAGCAGCATCAGCCACACAACCA
ACACGCCAAGTTTCAACGGCACTTCCACTTGAATAACTCATTCCAACAAA
TCGTACAGCAAACACAGCACAACCAGCCGCAGCAGCCGCACCACCAGCAG
CACAACCAACAGCAGCAGCAGTATATTCAGAACCAGAATCAACAACCGCA
GCCATCCACTTCGACTGCGGCGGCCTCCTCGTCGTCCTCGAACTCTTCGC
AGCCGGACATGGCCACCATAGCACTGGAGTATCTTGATACAGTCATACAT
TGCCTTAACCAGAATCCGGGGCCATTTGATTCGATTGCATCACGCTTCCT
GACCATTTTCGATGGCATGGAGAACAACAAATTCGTGCTCTCCATCGCCA
BO09713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-PA | 1680 | CG8963-RA | 1..934 | 17..950 | 4595 | 99.6 | Plus |
| CG8963-PB | 1680 | CG8963-RB | 1..934 | 17..950 | 4595 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 2550 | CG8963-RC | 251..1184 | 17..950 | 4625 | 99.7 | Plus |
| CG8963-RB | 2753 | CG8963-RB | 334..1267 | 17..950 | 4625 | 99.7 | Plus |
| CG8963-RA | 2522 | CG8963-RA | 223..1156 | 17..950 | 4625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17018063..17018908 | 862..17 | 4230 | 100 | Minus |
| 2R | 25286936 | 2R | 17017712..17017803 | 950..859 | 415 | 96.7 | Minus |
Blast to na_te.dros performed 2015-02-11 17:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2687 | 386..767 | 449 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2829 | 196..752 | 357 | 57.1 | Plus |
| BS | 5142 | BS BS 5142bp | 1981..2103 | 631..750 | 123 | 59.5 | Plus |
BO09713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:40 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:26 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-PB | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:52 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 223..1155 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:11 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 223..1155 | 17..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:11 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17017713..17017799 | 863..949 | 96 | <- | Minus |
| 2R | 17018063..17018908 | 17..862 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:52 Download gff for
BO09713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12905218..12905304 | 863..949 | 96 | <- | Minus |
| arm_2R | 12905568..12906413 | 17..862 | 100 | | Minus |
BO09713.complete Sequence
1711 bp (1711 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631555
> BO09713.complete
GAAGTTATCAGTCGACATGTCATGCCGCGCCCCCTTCCAGCCCGACGATC
AGTATGAGCAGCTGCGCCGGCCGAATGTCGGCGGAGCAGGCGGAGTGGCC
ATGCCGGGACTGGATCAGCAGGCGCATCTCTTTGGGGAGTACGCCGGAGC
GCAGGCGTACGGTCAGGTGGTTGGCAATTTTCCTGTGCAGGCCATGCAAC
CCCAGGCGCAGACTCTGTCCGATGCGTCCAATCTGTCGGCCACGGCCACA
ATTTTCATCCCTCGAGGAGCTGCTCCCCCGCAGCAGCAGTCGCGACATCA
GCAATACCAGCAGGCTGGTGGAGCCGGTGGAGGAGCTCCTTATGGCCAAC
AGCAGCCGCGCTATGTGAATGGTTTTAAGCATCACCATCAGCAGCACCAC
CAGCAGCCGCACTACAACCATCATCACAATCATCAGCAGAAGTTCAACAA
CGATATGCAGAAGCTAACGAATTCCGTGCAGAATCGCCTGCACCTGAATA
GCCAGCAGGGCTCAGCCGGCAACTACTATCAGCAGCAGCAGGTACACCAA
AACACACACCACCACCAACAACACCAGCAGCAGCATCAGCCACACAACCA
ACACGCCAAGTTTCAACGGCACTTCCACTTGAATAACTCATTCCAACAAA
TCGTACAGCAAACACAGCACAACCAGCCGCAGCAGCCGCACCACCAGCAG
CACAACCAACAGCAGCAGCAGTATATTCAGAACCAGAATCAACAACCGCA
GCCATCCACTTCGACTGCGGCGGCCTCCTCGTCGTCCTCGAACTCTTCGC
AGCCGGACATGGCCACCATAGCACTGGAGTATCTTGATACAGTCATACAT
TGCCTTAACCAGAATCCGGGCCAATTTGATTCGATTGCATCACGCTTCCT
GACCATTTTCGATGGCATGGAGAACAACCAATTCGTGCTCTCCATCGCCA
TGGAGGACATCTTCGAGAAGTCGATCGAGCAGCCGAACTTCCGGTACATG
GGCGCCAAGCTGTACAACCTGCTGCACATGCTCAACTCGAAGCCGGACTC
GCTGTTCCACACGCTGCTCAAGTGCAAGCTTGACTACCACCAGGAGGAAG
TGACCAAGTACATGCGCTCCAACGAGCAGCAGAAGGTTCGCGAGACTGCC
CTCTTTCTGGCCGAGCTGTACATGCAGTTGCGCGGCGACGACGACTCGCG
CATCCAGTTGATCGCTGTGAATATTGTATATTCGCTGAGTAAGCTGCTGG
CCAGCGAGAGCAACGAAAATGTTCGCTGCCTGTGCCAGACCCTCAAGCTG
GCTGGATATGATCTGACAGCCGATTGCCCCAAGGACATACAGGAGATCAT
CACCGCCCTGCAGGCGATCGAGCTGAAGTCGCCGGGCAAGTACCCCATGG
CGGCAAGTGTAATTGCCCTGCAGCAGAACAACTGGGGCAGGAAGGTGTCG
AACGCTCTGGGAGACGATGAAGATACAGTGAAGGAGCCGCCGCGCCTGAG
CGATGAGCCCGTCTTCTACGGACCTGATGGCCGCGAATTGACTGCCGAGG
AGACCGATTTTCTGGCCGGCGGGGATAATGATGGTGATGATGACTTTGAT
GGGGATGGTGCCGACCTAGAAATCGACGCGGAAATGGACGAGGAAACCGA
GCGGGCATACAAGGAGTTCTGTAAGCAGGGCAAACAGAAGACCGCAAGCT
TTCTAGACCAT
BO09713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 1680 | CG8963-PC | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| CG8963-RB | 1680 | CG8963-PB | 1..1677 | 17..1693 | 8385 | 100 | Plus |
| CG8963-RA | 1680 | CG8963-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-RC | 2550 | CG8963-RC | 251..1927 | 17..1693 | 8385 | 100 | Plus |
| CG8963-RB | 2753 | CG8963-RB | 334..2010 | 17..1693 | 8385 | 100 | Plus |
| CG8963-RA | 2522 | CG8963-RA | 223..1899 | 17..1693 | 8385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17018063..17018908 | 862..17 | 4230 | 100 | Minus |
| 2R | 25286936 | 2R | 17016969..17017803 | 1693..859 | 4175 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2687 | 386..767 | 449 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2829 | 196..752 | 357 | 57.1 | Plus |
| BS | 5142 | BS BS 5142bp | 1981..2103 | 631..750 | 123 | 59.5 | Plus |
BO09713.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:00 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 1..1680 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:51 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 340..2016 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:48 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 223..1899 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:00 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RB | 340..2016 | 17..1693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:59 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8963-RA | 223..1899 | 17..1695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:59 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17016967..17017799 | 863..1695 | 99 | <- | Minus |
| 2R | 17018063..17018908 | 17..862 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:48 Download gff for
BO09713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12904472..12905304 | 863..1695 | 99 | <- | Minus |
| arm_2R | 12905568..12906413 | 17..862 | 100 | | Minus |
BO09713.pep Sequence
Translation from 16 to 1711
> BO09713.pep
MSCRAPFQPDDQYEQLRRPNVGGAGGVAMPGLDQQAHLFGEYAGAQAYGQ
VVGNFPVQAMQPQAQTLSDASNLSATATIFIPRGAAPPQQQSRHQQYQQA
GGAGGGAPYGQQQPRYVNGFKHHHQQHHQQPHYNHHHNHQQKFNNDMQKL
TNSVQNRLHLNSQQGSAGNYYQQQQVHQNTHHHQQHQQQHQPHNQHAKFQ
RHFHLNNSFQQIVQQTQHNQPQQPHHQQHNQQQQQYIQNQNQQPQPSTST
AAASSSSSNSSQPDMATIALEYLDTVIHCLNQNPGQFDSIASRFLTIFDG
MENNQFVLSIAMEDIFEKSIEQPNFRYMGAKLYNLLHMLNSKPDSLFHTL
LKCKLDYHQEEVTKYMRSNEQQKVRETALFLAELYMQLRGDDDSRIQLIA
VNIVYSLSKLLASESNENVRCLCQTLKLAGYDLTADCPKDIQEIITALQA
IELKSPGKYPMAASVIALQQNNWGRKVSNALGDDEDTVKEPPRLSDEPVF
YGPDGRELTAEETDFLAGGDNDGDDDFDGDGADLEIDAEMDEETERAYKE
FCKQGKQKTASFLDH
BO09713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8963-PC | 559 | CG8963-PC | 1..559 | 1..559 | 2986 | 100 | Plus |
| CG8963-PB | 559 | CG8963-PB | 1..559 | 1..559 | 2986 | 100 | Plus |
| CG8963-PA | 559 | CG8963-PA | 1..559 | 1..559 | 2986 | 100 | Plus |
| CG8963-PE | 520 | CG8963-PE | 1..520 | 1..559 | 2649 | 91.9 | Plus |
| Smr-PF | 3601 | CG4013-PF | 74..277 | 83..269 | 215 | 32.5 | Plus |
