Clone Sequence Records
BO09719.3prime Sequence
982 bp (837 high quality bases) assembled on 2006-01-28
> BO09719.3prime
ATGGTCTAGAAAGCTTGCTCGCTTCAGGTGCTCCAGCATGTACTGCAGAC
AGCTGTGGTGGGCGGGCGGCAGGCGACGCACTGCCTCCGCCATGAGCTGG
CGCTGCTCGGCCTGCTTGCCGGTGCGTCCTGCTGCCATAAAGCTGGGATA
CGCCTGGAATGTGATGAGCGGCACGGGCAGTAGGCGCAGGTAGAGCTTCA
GTGTGCCGGCGATCACATTCACATTGCCATACGCCGTCTCCGACATGTCC
GTCTTCTCGCCCTCGCGATCCAGGGCGAGCTTGAGTGCCTCGATCTCATC
GGCAAAGCCGGAGACCCGATAGATACCCTCCTGCAGCATGCCCCGGGCCT
CCACCTCCTCCACGCAGCGGCGCACCACGAAGGGTATCTGGTGGTGGGGC
TCCAGCTGCACCATCGTGGTCAGATCCGTGCCAAATACGCCGCGTATGCG
CTTCAGATCCGGCACACACTTGGGCGGCACCAGTTCGGAGCACTTGCTGT
GCGCCACAAAGCCGCACGCCTCACACTTGACGCCCTGGGCGGTGAATCCC
CACAAGAAGTTGGCGCAGAACTCGCACCAGTTGAGCCCCTTAAACGTGTG
CACCTTGAAGTGATGCGGCTTCTCGTAGACCAGCGGCATGGGATCCACGG
CTGGAGGCGGTGGCTCCTCCTGCTTCTGCTCCTTCTCCTCGGCTGGCGAT
TCCTTCGATTCCTTGGCGGCGGCCTTGCCCAGCTCATTGGACAGAGCCCT
AAGTTTCCGGCCATTTAAAGTCATGTATGGGCTTTGCTGGTAGCAGTTCT
TGGTCTGTTGATTAATCTGCTGGATGATGGGACTGGCGTGAAGCTGCATG
TGAAAAGTGATCAGCCCGTCGGCGACCATGTCGTGCACCGTGTCGAAGCG
CTTGTCCTGNCCGCGCAGATAGTGTCCCACGCCGGGCTTATAGAGCAGCT
TGTAGTGCTTGGGTCGCTTGGTGAAGCGCAGG
BO09719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3208-PB | 1323 | RhoGAP5A-RB | 357..1320 | 982..19 | 4551 | 98.8 | Minus |
| CG3208-PA | 1485 | RhoGAP5A-RA | 357..1319 | 982..20 | 4546 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RB | 1905 | CG3208-RB | 486..1449 | 982..19 | 4659 | 98.9 | Minus |
| RhoGAP5A-RA | 1933 | CG3208-RA | 486..1448 | 982..20 | 4654 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5617308..5617788 | 125..605 | 2375 | 99.6 | Plus |
| X | 23542271 | X | 5617855..5618236 | 601..982 | 1779 | 97.6 | Plus |
| X | 23542271 | X | 5617121..5617226 | 20..125 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:06:15 has no hits.
BO09719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:47 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-PB | 357..1323 | 16..982 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:35 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-PB | 357..1323 | 16..982 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:29 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 486..1453 | 15..982 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:46 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 486..1453 | 15..982 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:46 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5617116..5617226 | 14..125 | 97 | <- | Plus |
| X | 5617309..5617786 | 126..603 | 99 | <- | Plus |
| X | 5617858..5618236 | 604..982 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:29 Download gff for
BO09719.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5511149..5511259 | 14..125 | 97 | <- | Plus |
| arm_X | 5511342..5511819 | 126..603 | 99 | <- | Plus |
| arm_X | 5511891..5512269 | 604..982 | 97 | | Plus |
BO09719.5prime Sequence
763 bp (762 high quality bases) assembled on 2006-01-28
> BO09719.5prime
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTT
BO09719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3208-PB | 1323 | RhoGAP5A-RB | 1..747 | 17..763 | 3560 | 99 | Plus |
| CG3208-PA | 1485 | RhoGAP5A-RA | 1..747 | 17..763 | 3560 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RA | 1933 | CG3208-RA | 130..876 | 17..763 | 3630 | 99.1 | Plus |
| RhoGAP5A-RB | 1905 | CG3208-RB | 130..876 | 17..763 | 3630 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5617855..5618480 | 754..129 | 3025 | 98.9 | Minus |
| X | 23542271 | X | 5618566..5618677 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:00:33 has no hits.
BO09719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:48 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-PB | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:36 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-PA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:18 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..876 | 10..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:34 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..876 | 10..763 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:34 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5617855..5618480 | 129..754 | 98 | <- | Minus |
| X | 5618566..5618680 | 10..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:18 Download gff for
BO09719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5511888..5512513 | 129..754 | 98 | <- | Minus |
| arm_X | 5512599..5512713 | 10..128 | 96 | | Minus |
BO09719.complete Sequence
1354 bp (1354 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ631556
> BO09719.complete
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCT
TGTGGGGATTCACCGCCCAGGGCGTCAAGTGTGAGGCGTGCGGCTTTGTG
GCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCAAGTGTGTGCCGGATCT
GAAGCGCATACGCGGCGTATTTGGCACGGATCTGACCACGATGGTGCAGC
TGGAGCCCCACCACCAGATACCCTTCGTGGTGCGCCGCTGCGTGGAGGAG
GTGGAGGCCCGGGGCATGCTGCAGGAGGGTATCTATCGGGTCTCCGGCTT
TGCCGATGAGATCGAGGCACTCAAGCTCGCCCTGGATCGCGAGGGCGAGA
AGACGGACATGTCGGAGACGGCGTATGGCAATGTGAATGTGATCGCCGGC
ACACTGAAGCTCTACCTGCGCCTACTGCCCGTGCCGCTCATCACATTCCA
GGCGTATCCCAGCTTTATGGCAGCAGGACGCACCGGCAAGCAGGCCGAGC
AGCGCCAGCTCATGGCGGAGGCAGTGCGTCGCCTGCCGCCCGCCCACCAC
AGCTGTCTGCAGTACATGCTGGAGCACCTGAAGCGAGCAAGCTTTCTAGA
CCAT
BO09719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RB | 1323 | CG3208-PB | 1..1320 | 17..1336 | 6465 | 99.3 | Plus |
| RhoGAP5A-RA | 1485 | CG3208-PA | 1..1319 | 17..1335 | 6460 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RB | 1905 | CG3208-RB | 130..1449 | 17..1336 | 6465 | 99.3 | Plus |
| RhoGAP5A-RA | 1933 | CG3208-RA | 130..1448 | 17..1335 | 6460 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5617855..5618480 | 754..129 | 3025 | 98.9 | Minus |
| X | 23542271 | X | 5617308..5617788 | 1230..750 | 2375 | 99.6 | Minus |
| X | 23542271 | X | 5618566..5618677 | 128..17 | 560 | 100 | Minus |
| X | 23542271 | X | 5617121..5617226 | 1335..1230 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:19 has no hits.
BO09719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:54 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 1..1323 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:15 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 118..1448 | 10..1340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:22 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 130..1449 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:54 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 118..1448 | 10..1340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:51 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 130..1449 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:51 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5617119..5617226 | 1230..1338 | 98 | <- | Minus |
| X | 5617309..5617786 | 752..1229 | 99 | <- | Minus |
| X | 5617858..5618480 | 129..751 | 98 | <- | Minus |
| X | 5618566..5618677 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:22 Download gff for
BO09719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5511152..5511259 | 1230..1338 | 98 | <- | Minus |
| arm_X | 5511342..5511819 | 752..1229 | 99 | <- | Minus |
| arm_X | 5511891..5512513 | 129..751 | 98 | <- | Minus |
| arm_X | 5512599..5512710 | 17..128 | 100 | | Minus |
BO09719.pep Sequence
Translation from 16 to 1354
> BO09719.pep
MPRNTEAGAGNANTGGSGGVGGAPEPSSPVQKVWKPELYKLQLEAPAPCP
LRCQRTLPLPPAKSTAEAVEANNLAGRLYGSEYHGLMGHLEAEQLLANAR
DGSYFVRRSPQSDGYYTLSLRFNKRPKHYKLLYKPGVGHYLRGQDKRFDT
VHDMVADGLINFHMQLHASPIIQQINQQTKNCYQQSPYMTLNGRKLRALS
NELGKAAAKESKESPAEEKEQKQEEPPPPAVDPMPLVYEKPHHFKVHTFK
GLNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRG
VFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIE
ALKLALDREGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSF
MAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKRASFLDH
BO09719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-PA | 494 | CG3208-PA | 1..442 | 1..442 | 2350 | 99.5 | Plus |
| RhoGAP5A-PB | 440 | CG3208-PB | 1..440 | 1..440 | 2349 | 100 | Plus |
| RhoGAP100F-PB | 1191 | CG1976-PB | 945..1090 | 301..438 | 204 | 36.3 | Plus |
| RhoGAP100F-PE | 1200 | CG1976-PE | 934..1079 | 301..438 | 204 | 36.3 | Plus |
| RhoGAP100F-PJ | 1297 | CG1976-PJ | 945..1090 | 301..438 | 204 | 36.3 | Plus |
