Clone Sequence Records
BO09722.3prime Sequence
876 bp (831 high quality bases) assembled on 2006-01-28
> BO09722.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGGCTTTGAATTTCGAGGCACTGTAGG
GTATGTAGAAGGCGCTGCTGGGCGCAAATTCGGTTCGCGGATGATGAACT
GCCGCCGAGATAGATCGTCCCGTGGATGGTGTGTTGCTGGAAACGCTGGT
CGCCCCAAATGGATGCAGTGTGGAGCGGTTGGAGGAACTGTTGCTGTGGC
CATGGCTGTTGTGTCCGCCCCCGCCGCTGGAGTTGGTTTGGCTCGAAGTG
GCCGTGGTGGTGGCCAGCAAATCCCTGCTGTGCCTGCCCAGATTAAGCGA
GGGCAGGACTACCGCGTTCCTGTTGTTAAAAAAGCGATTGGCGGCCATGG
GCATGTGCCAGGCGGACGATCGATGACTTTGATGTGGCAACACGGCGGAC
TTGGCCTGGTTCTGATGCTGCAGCTGCTCCTTCTGCTGCACCTGGGTGAG
CTGAACGAAGCTGCGGTTGTTGAGCAATCCCCGAAAGCGCCGGTTGGTAT
CGAGCACATTGAGAATGGGCGGCATGCGCAGGCGTGCCGAGGATTGGGTG
GTGGCTGAGATGGGCAGCTGGGGCTGGTTCTGCTGGCTGCGCTGTCGTTT
GAGGAGTCTAACCGAAACGGAGGTAACCCGCAGATCCCTGTCCAGTAGAT
CCACCAGCTTCTTCTGGCTGTGCCGTAAATAGGAGTGGTGATGAGGCTGT
TCTGGTTCTTCTGCCTTGGGTGTCAGAAATCCATCCTCCGCCTCCTCGTC
ATCATCGTCGTCGTCCAGGGAGTTCAGACTAAGATTTGAAATCGAGTCAA
TATCCTCCCGCGTCTGACTATCGAAGCTGTGGTGGCGCAGCGTTCGAGTC
CGGCGGGCCAGCAGGCTAGGGAACTT
BO09722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-PA | 1176 | CG31125-RA | 316..1173 | 876..19 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-RA | 1450 | CG31125-RA | 567..1424 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24653397..24654254 | 19..876 | 4275 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:26:09 has no hits.
BO09722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:53 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-PA | 316..1176 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:42 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-PA | 316..1176 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:58 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 567..1430 | 12..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:08 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 567..1430 | 12..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:08 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24653391..24654254 | 12..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:58 Download gff for
BO09722.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20479113..20479976 | 12..876 | 99 | | Plus |
BO09722.5prime Sequence
919 bp (859 high quality bases) assembled on 2006-01-28
> BO09722.5prime
GAAGTTATCAGTCGACATGTCCTCAGACAGACGCTACTATTTCGGAGCGG
ATTTGGAGGACAATGAGGGTGCCATCTGCAAGGCCAACGACAACAACAAC
GAACAGGAAGCGGATAAGGACGATCCGGATGAATCGGAGTTCCTGCAGGA
TGTGCCCTACTCCTCTAGCAGCATTGACCGCAGCTCGGTGGGCTCCATTC
CGTGGGCGGACGATGCCATCAAGAAGAACCTGCTGGACTGGGAGCGGGTG
GAGCGGCTGATGAGCGGCGAGGATCCCTTGACGGAGCTTCAGGAGCCCGA
GTTGCGCAACGAGATCGCCGACTGGCACCGAAAGTTCCCTAGCCTGCTGG
GCCGCCGGACTCGAACGCTGCGCCACCACAGCTTCGATAGTCAGACGCGG
GAGGATATTGACTCGATTTCAAATCTTAGTCTGAACTCCCTGGACGACGA
CGATGATGACGAGGAGGCGGAGGATGGATTTCTGACACCCAAGGCAGAAG
AACCAGAACAGCCTCATCACCACTCCTATTTACGGCACAGCCAGAAGAAG
CTGGTGGATCTACTGGACAGGGATCTGCGGGTTACCTCCGTTTCGGTTAG
ACTCCTCAAACGACAGCGCAGCCAGCAGAACCAGCCCCAGCTGCCCATCT
CAGCCACCACCCAATCCTCGGCACGCCTGCGCATGCCGCCCATTCTCAAT
GTGCTCGATACCAACCGGCGCTTTCGGGGATTGCTCAACAACCGCAGCTT
CGTTCAGCTCACCCAGGTGCAGCAGAAGGAGCAGCTGCAGCATCAGAACC
AGGCCAAGTCCGCCGTGTTGCCACATCAAAGTCATCGATCGTCCGCCTGG
CACATGCCCATGGCCGGCAATCGCTTTTTTAACACAGGAACGCGGTAGTC
CTGCCCTCGCTAAATCTGG
BO09722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-PA | 1176 | CG31125-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
| CG31125-PA | 1176 | CG31125-RA | 869..904 | 884..919 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-RA | 1450 | CG31125-RA | 252..1155 | 17..919 | 4465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24653666..24654569 | 919..17 | 4440 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:15:47 has no hits.
BO09722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:54 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:44 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:57 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 244..1155 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:53 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 244..1155 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:53 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24653666..24654577 | 9..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:57 Download gff for
BO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20479388..20480299 | 9..919 | 99 | | Minus |
BO09722.complete Sequence
1207 bp (1207 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ631557
> BO09722.complete
GAAGTTATCAGTCGACATGTCCTCAGACAGACGCTACTATTTCGGAGCGG
ATTTGGAGGACAATGAGGGTGCCATCTGCAAGGCCAACGACAACAACAAC
GAACAGGAAGCGGATAAGGACGATCCGGATGAATCGGAGTTCCTGCAGGA
TGTGCCCTACTCCTCTAGCAGCATTGACCGCAGCTCGGTGGGCTCCATTC
CGTGGGCGGACGATGCCATCAAGAAGAACCTGCTGGACTGGGAGCGGGTG
GAGCGGCTGATGAGCGGCGAGGATCCCTTGACGGAGCTTCAGGAGCCCGA
GTTGCGCAACGAGATCGCCGACTGGCACCGAAAGTTCCCTAGCCTGCTGG
GCCGCCGGACTCGAACGCTGCGCCACCACAGCTTCGATAGTCAGACGCGG
GAGGATATTGACTCGATTTCAAATCTTAGTCTGAACTCCCTGGACGACGA
CGATGATGACGAGGAGGCGGAGGATGGATTTCTGACACCCAAGGCAGAAG
AACCAGAACAGCCTCATCACCACTCCTATTTACGGCACAGCCAGAAGAAG
CTGGTGGATCTACTGGACAGGGATCTGCGGGTTACCTCCGTTTCGGTTAG
ACTCCTCAAACGACAGCGCAGCCAGCAGAACCAGCCCCAGCTGCCCATCT
CAGCCACCACCCAATCCTCGGCACGCCTGCGCATGCCGCCCATTCTCAAT
GTGCTCGATACCAACCGGCGCTTTCGGGGATTGCTCAACAACCGCAGCTT
CGTTCAGCTCACCCAGGTGCAGCAGAAGGAGCAGCTGCAGCATCAGAACC
AGGCCAAGTCCGCCGTGTTGCCACATCAAAGTCATCGATCGTCCGCCTGG
CACATGCCCATGGCCGCCAATCGCTTTTTTAACAACAGGAACGCGGTAGT
CCTGCCCTCGCTTAATCTGGGCAGGCACAGCAGGGATTTGCTGGCCACCA
CCACGGCCACTTCGAGCCAAACCAACTCCAGCGGCGGGGGCGGACACAAC
AGCCATGGCCACAGCAACAGTTCCTCCAACCGCTCCACACTGCATCCATT
TGGGGCGACCAGCGTTTCCAGCAACACACCATCCACGGGACGATCTATCT
CGGCGGCAGTTCATCATCCGCGAACCGAATTTGCGCCCAGCAGCGCCTTC
TACATACCCTACAGTGCCTCGAAATTCAAAGCCTTCAAGGCAAGCTTTCT
AGACCAT
BO09722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-RA | 1176 | CG31125-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-RA | 1450 | CG31125-RA | 252..1424 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24653397..24654569 | 1189..17 | 5865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:41:40 has no hits.
BO09722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:55 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 1..1176 | 17..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:17 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 245..1431 | 9..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:34:39 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 252..1424 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:55 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 245..1431 | 9..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:24 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31125-RA | 252..1424 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:24 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24653395..24654569 | 17..1191 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:34:39 Download gff for
BO09722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20479117..20480291 | 17..1191 | 99 | | Minus |
BO09722.pep Sequence
Translation from 16 to 1207
> BO09722.pep
MSSDRRYYFGADLEDNEGAICKANDNNNEQEADKDDPDESEFLQDVPYSS
SSIDRSSVGSIPWADDAIKKNLLDWERVERLMSGEDPLTELQEPELRNEI
ADWHRKFPSLLGRRTRTLRHHSFDSQTREDIDSISNLSLNSLDDDDDDEE
AEDGFLTPKAEEPEQPHHHSYLRHSQKKLVDLLDRDLRVTSVSVRLLKRQ
RSQQNQPQLPISATTQSSARLRMPPILNVLDTNRRFRGLLNNRSFVQLTQ
VQQKEQLQHQNQAKSAVLPHQSHRSSAWHMPMAANRFFNNRNAVVLPSLN
LGRHSRDLLATTTATSSQTNSSGGGGHNSHGHSNSSSNRSTLHPFGATSV
SSNTPSTGRSISAAVHHPRTEFAPSSAFYIPYSASKFKAFKASFLDH
BO09722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31125-PA | 391 | CG31125-PA | 1..391 | 1..391 | 2033 | 100 | Plus |
