Clone Sequence Records
BO09724.3prime Sequence
869 bp (868 high quality bases) assembled on 2006-01-28
> BO09724.3prime
ATGGTCTAGAAAGCTTGCGGTTGCAGCCAGCTTGAGGACGCGGGCCTGAC
TACGCGAGGAGAGGCGAATATCCGCTGGACTCTGCATCCAGGGTTCGCCA
TCCGCCTGCATTGGCACGGTCTCCTTGACTTGTAGCCTTATTTGCTTGGC
TTGGCCAATTCGCACTGGTTTGCTTATATTGCACTGCAGTTGGGCAATGT
GGAAAGAGGAAACAATGCCGAACACCTCCATCATACCATCGGAGATGGAG
TTTACAATGCGCACTTCACCATTGGCGTTGCTTAGCTCGCAGAGCTTGCA
GCCAGCTCCCCATGAGTCGATATTTAGGAACACCAGCGCCTGCAGCTCAG
GCAGTTGCACTGGCTTGTTGTCCAGATACAAGGTCAGCTTTTCCTCGATG
TGTTCGCAGCCAGGTTGCATCACCTGTTGCGTTCCGAAGGTAAAGTACAG
CAGCTTATTGAATATTCGACTGCTGAGCAGATAGAATCGAGATTCGCGCG
TCTTGTGGAAGTTGTAAGTGATGTACGCATCCACACCTACACTGAAATAG
TTGTACACATGAATCGTCTTCGTGGGATGCCTCTGAATAGGCAGTCGATA
GTGCAGTTTCTCTATTTGCAGGTCAAAGCGGTCGAGATTCACGGAACGTG
CTCGCCGTATGCTCCTAAGGATCTTCACCGGGTCGAGAACAGAGGGCGGC
TCTGCTCCCCAGCCCAGAACTCGCGACAAATCGTTGCCGGTGCCCAGCGG
CATGATGGCCACCGAGGGCTGGGGCTTGATATTCAGCGTATAGATTGTAT
TGAGCACCCAACCGATGGTGCCATCGCCGCCCGCCACCAGTATGCGACAC
GGGCGAGGACTGGCTTTGG
BO09724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8657-PA | 1605 | Dgkepsilon-RA | 752..1602 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-RB | 1926 | CG8657-RB | 867..1717 | 869..19 | 4255 | 100 | Minus |
| Dgkepsilon-RA | 2010 | CG8657-RA | 951..1801 | 869..19 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12758554..12758969 | 869..454 | 2080 | 100 | Minus |
| 2R | 25286936 | 2R | 12759024..12759343 | 455..136 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 12759398..12759515 | 136..19 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:16 has no hits.
BO09724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:57 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8657-PA | 752..1605 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:48 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8657-PA | 752..1605 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:31:10 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 951..1809 | 10..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:15 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 951..1809 | 10..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:15 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12759399..12759523 | 10..135 | 96 | | Minus |
| 2R | 12758554..12758969 | 454..869 | 100 | -> | Minus |
| 2R | 12759026..12759343 | 136..453 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:31:10 Download gff for
BO09724.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8646059..8646474 | 454..869 | 100 | -> | Minus |
| arm_2R | 8646531..8646848 | 136..453 | 100 | -> | Minus |
| arm_2R | 8646904..8647028 | 10..135 | 96 | | Minus |
BO09724.5prime Sequence
857 bp (839 high quality bases) assembled on 2006-01-28
> BO09724.5prime
GAAGTTATCAGTCGACATGGACATAGGCACTATTGAGCTGAGCGTGGAGG
CGCTGATAGGATCCCTGCTGGCCCTCAGTATCCTCTTTGCCTTCTGCCGC
AGCCTGCTTTCCGAGGACTTTGTGAGCACCTTCAAAACACGTCACAGCTG
GAAATCAATAAAAGTGTTGGAACAGGCCTGCTTCTGCAATGTGTGCGAGA
TCCTGCTAACCCCCTCCGCAGGACTCTTTTGCGACTGCTGCGGCCTGTGC
ACCCATGCCACGCCCCCTTGCCAGCGGAGGGCGGACAGGGAGTACCGGTG
CAAGGACAAGTGGTTGCGCAACGAGTCCTCCGTGCGGCACTTGTGGGTGC
ATGGCAATCTGCCTATGGGAGTGCATTGTGCCGACTGCAACGAGGAGGTG
GATCACCATGTCAGCACCGATCCAGGATTATACGGATGGCGATGTGCATG
GTGTCAGCGGTGCTATCATAACGATTGCTACACTCGCGCTGACTCCATGG
AAGCCTGCGACTTGGGCGAGTTCAAGGACATGATCTTCCCGCCATACAGC
TTTGTGGCCGCCCGAACCAGAGACTCGATGCGGCTCCACTTGGCCAGCAT
TACGCCGCCAGACATTGAGAACTGGGAGCCGCTTATTGTGATCGCCAACA
CCAAGTCGGGCAGCAGTACGGGTGCCAATGTGTTGTCCCTGCTCCGCGGT
TACCTGCATCCGCTGCAGGTGATGGAACTGGGCTCGAGGGGTCCGCAGGA
CGCCCTGCAGTGGGCCGCCAAAGCCAGTCCTCGCCCGTGTCGCATACTGG
TGGCGGGCGGCGATGGCACCATCGGGTTGGGTGCTCAATACAATCTATAC
GCTGAAT
BO09724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8657-PA | 1605 | Dgkepsilon-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
| CG8657-PA | 1605 | Dgkepsilon-RA | 808..840 | 825..857 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-RB | 1926 | CG8657-RB | 115..955 | 16..857 | 4185 | 99.9 | Plus |
| Dgkepsilon-RA | 2010 | CG8657-RA | 199..1039 | 16..857 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12757960..12758642 | 174..857 | 3370 | 99.9 | Plus |
| 2R | 25286936 | 2R | 12757744..12757904 | 16..176 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:58:20 has no hits.
BO09724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:18:58 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8657-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:49 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8657-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:55 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 185..1039 | 5..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:56:58 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 185..1039 | 5..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:56:58 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12757730..12757903 | 5..175 | 97 | -> | Plus |
| 2R | 12757962..12758642 | 176..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:55 Download gff for
BO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8645235..8645408 | 5..175 | 97 | -> | Plus |
| arm_2R | 8645467..8646147 | 176..857 | 99 | | Plus |
BO09724.complete Sequence
1636 bp (1636 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ631558
> BO09724.complete
GAAGTTATCAGTCGACATGGACATAGGCACTATTGAGCTGAGCGTGGAGG
CGCTGATAGGATCCCTGCTGGCCCTCAGTATCCTCTTTGCCTTCTGCCGC
AGCCTGCTTTCCGAGGACTTTGTGAGCACCTTCAAAACACGTCACAGCTG
GAAATCAATAAAAGTGTTGGAACAGGCCTGCTTCTGCAATGTGTGCGAGA
TCCTGCTAACCCCCTCCGCAGGACTCTTTTGCGACTGCTGCGGCCTGTGC
ACCCATGCCACGCCCCCTTGCCAGCGGAGGGCGGACAGGGAGTACCGGTG
CAAGGACAAGTGGTTGCGCAACGAGTCCTCCGTGCGGCACTTGTGGGTGC
ATGGCAATCTGCCTATGGGAGTGCATTGTGCCGACTGCAACGAGGAGGTG
GATCACCATGTCAGCACCGATCCAGGATTATACGGATGGCGATGTGCATG
GTGTCAGCGGTGCTATCATAACGATTGCTACACTCGCGCTGACTCCATGG
AAGCCTGCGACTTGGGCGAGTTCAAGGACATGATCTTCCCGCCATACAGC
TTTGTGGCCGCCCGAACCAGAGACTCGATGCGGCTCCACTTGGCCAGCAT
TACGCCGCCAGACATTGAGAACTGGGAGCCGCTTATTGTGATCGCCAACA
CCAAGTCGGGCAGCAGTACGGGTGCCAATGTGTTGTCCCTGCTCCGCGGT
TACCTGCATCCGCTGCAGGTGATGGAACTGGGCTCGAGGGGTCCGCAGGA
CGCCCTGCAGTGGGCCGCCAAAGCCAGTCCTCGCCCGTGTCGCATACTGG
TGGCGGGCGGCGATGGCACCATCGGTTGGGTGCTCAATACAATCTATACG
CTGAATATCAAGCCCCAGCCCTCGGTGGCCATCATGCCGCTGGGCACCGG
CAACGATTTGTCGCGAGTTCTGGGCTGGGGAGCAGAGCCGCCCTCTGTTC
TCGACCCGGTGAAGATCCTTAGGAGCATACGGCGAGCACGTTCCGTGAAT
CTCGACCGCTTTGACCTGCAAATAGAGAAACTGCACTATCGACTGCCTAT
TCAGAGGCATCCCACGAAGACGATTCATGTGTACAACTATTTCAGTGTAG
GTGTGGATGCGTACATCACTTACAACTTCCACAAGACGCGCGAATCTCGA
TTCTATCTGCTCAGCAGTCGAATATTCAATAAGCTGCTGTACTTTACCTT
CGGAACGCAACAGGTGATGCAACCTGGCTGCGAACACATCGAGGAAAAGC
TGACCTTGTATCTGGACAACAAGCCAGTGCAACTGCCTGAGCTGCAGGCG
CTGGTGTTCCTAAATATCGACTCATGGGGAGCTGGCTGCAAGCTCTGCGA
GCTAAGCAACGCCAATGGTGAAGTGCGCATTGTAAACTCCATCTCCGATG
GTATGATGGAGGTGTTCGGCATTGTTTCCTCTTTCCACATTGCCCAACTG
CAGTGCAATATAAGCAAACCAGTGCGAATTGGCCAAGCCAAGCAAATAAG
GCTACAAGTCAAGGAGACCGTGCCAATGCAGGCGGATGGCGAACCCTGGA
TGCAGAGTCCAGCGGATATTCGCCTCTCCTCGCGTAGTCAGGCCCGCGTC
CTCAAGCTGGCTGCAACCGCAAGCTTTCTAGACCAT
BO09724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-RB | 1605 | CG8657-PB | 1..1602 | 17..1618 | 8010 | 100 | Plus |
| Dgkepsilon-RA | 1605 | CG8657-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-RB | 1926 | CG8657-RB | 115..1717 | 16..1618 | 8015 | 100 | Plus |
| Dgkepsilon-RA | 2010 | CG8657-RA | 199..1801 | 16..1618 | 8015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12757960..12758969 | 174..1183 | 5050 | 100 | Plus |
| 2R | 25286936 | 2R | 12759024..12759343 | 1182..1501 | 1600 | 100 | Plus |
| 2R | 25286936 | 2R | 12757744..12757904 | 16..176 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 12759398..12759515 | 1501..1618 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:17 has no hits.
BO09724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:45 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 1..1605 | 17..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:07 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 185..1809 | 5..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:22 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 200..1801 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:45 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 185..1809 | 5..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:15 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgkepsilon-RA | 200..1801 | 17..1620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:15 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12759026..12759343 | 1184..1501 | 100 | -> | Plus |
| 2R | 12759399..12759515 | 1502..1620 | 98 | | Plus |
| 2R | 12757745..12757903 | 17..175 | 100 | -> | Plus |
| 2R | 12757962..12758969 | 176..1183 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:22 Download gff for
BO09724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8645250..8645408 | 17..175 | 100 | -> | Plus |
| arm_2R | 8645467..8646474 | 176..1183 | 100 | -> | Plus |
| arm_2R | 8646531..8646848 | 1184..1501 | 100 | -> | Plus |
| arm_2R | 8646904..8647020 | 1502..1620 | 98 | | Plus |
BO09724.pep Sequence
Translation from 16 to 1636
> BO09724.pep
MDIGTIELSVEALIGSLLALSILFAFCRSLLSEDFVSTFKTRHSWKSIKV
LEQACFCNVCEILLTPSAGLFCDCCGLCTHATPPCQRRADREYRCKDKWL
RNESSVRHLWVHGNLPMGVHCADCNEEVDHHVSTDPGLYGWRCAWCQRCY
HNDCYTRADSMEACDLGEFKDMIFPPYSFVAARTRDSMRLHLASITPPDI
ENWEPLIVIANTKSGSSTGANVLSLLRGYLHPLQVMELGSRGPQDALQWA
AKASPRPCRILVAGGDGTIGWVLNTIYTLNIKPQPSVAIMPLGTGNDLSR
VLGWGAEPPSVLDPVKILRSIRRARSVNLDRFDLQIEKLHYRLPIQRHPT
KTIHVYNYFSVGVDAYITYNFHKTRESRFYLLSSRIFNKLLYFTFGTQQV
MQPGCEHIEEKLTLYLDNKPVQLPELQALVFLNIDSWGAGCKLCELSNAN
GEVRIVNSISDGMMEVFGIVSSFHIAQLQCNISKPVRIGQAKQIRLQVKE
TVPMQADGEPWMQSPADIRLSSRSQARVLKLAATASFLDH
BO09724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgkepsilon-PB | 534 | CG8657-PB | 1..534 | 1..534 | 2856 | 100 | Plus |
| Dgkepsilon-PA | 534 | CG8657-PA | 1..534 | 1..534 | 2856 | 100 | Plus |
| CG31140-PF | 1026 | CG31140-PF | 602..949 | 194..530 | 491 | 34.4 | Plus |
| rdgA-PG | 1452 | CG42667-PG | 592..1132 | 43..529 | 489 | 28.6 | Plus |
| rdgA-PE | 991 | CG42667-PE | 125..671 | 43..529 | 479 | 28.5 | Plus |
