Clone Sequence Records
BO09728.3prime Sequence
950 bp (824 high quality bases) assembled on 2006-01-28
> BO09728.3prime
ATGGTCTAGAAAGCTTGCTTTCTGGCTGGGAGTGTAGTACATGGAGTGCA
GGAATAGGCGAGTCACTTCTCCGATCACCGAACGGTCGGGTATGCTCTGT
GCCATGCCGTAGAGAGCCATCTTTCCAACGACGGGCTGGCCGGGATCCTT
CATGATCTCCGCCGTACAGCTGCGCACATCGGCAATGAATTTATCCGCGA
CTCCGGGCTGTGTGTGCATGTCCGTCACGCACAGGTGGATACCAGATGGA
AACTGCAGCGCATTTAGGTTCCAGCCCAGTTTGCACAGCGAATCCGATAG
CCGGAAAATGTCAAACACATTGGAACCCAGGGCAATCACTGAAGTAGCTG
GCTTGCCAAAGATAAAGATGCCATCGATGTCGCGAACGCCCCTCTCGATA
TAGCGCGCCGTATCCACAATGCGCTTAGTGGCTTCCAGATAACCATCATA
GCCAAAGCTCATCATGGTAGCCCAGCAGGCGGCGATAATACCTCCGGCAC
GGGAACCGTTGACTGTGGGAGAACCATACACGCCGCCAGGCCAGTCAGTA
GTCACAGTGAACTGATGGTCCTTGTACTTCTTGTCCGAGTAAAGGATCAC
CGATGATCCCTTGGGCGCGAAACCATACTTGTGGGTATCAGCGGAGATAC
TGGTCACTCCCTTGACCTCAAAGTCGAAGGGACGCAGCTTATAGCCGGCG
TTGCGGACCAAGGCCACCACAAAGCTGCCCAGGCAGGCGTCCACGTGCAC
GGGAATGTCGTACTTAACGCCCAAAGCGGCGATAGCTTCGATATCATCTA
TGGTTCCATAGGGGAAGTTTGGAGCAGACCCAACCAGCAGAATCGTGTTC
CTATTAATGGCACGTTTGAACTTCTTAATGTCCACTTCGTAGGGTCTCGG
ATCTACATCCACGGATCGCACGTGGATATTAAAGTACTGACCACCCTTGT
BO09728.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8946-PB | 1638 | Sply-RB | 761..1635 | 893..19 | 4250 | 99.4 | Minus |
| CG8946-PA | 1638 | Sply-RA | 761..1635 | 893..19 | 4250 | 99.4 | Minus |
| CG8946-PB | 1638 | Sply-RB | 704..756 | 950..898 | 240 | 98.1 | Minus |
| CG8946-PA | 1638 | Sply-RA | 704..756 | 950..898 | 240 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 864..1795 | 950..19 | 4525 | 99.1 | Minus |
| Sply-RB | 2014 | CG8946-RB | 801..1732 | 950..19 | 4525 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089210..17089659 | 389..838 | 2205 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17088723..17088946 | 19..242 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 17089005..17089152 | 242..389 | 725 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17089714..17089826 | 838..950 | 475 | 94.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:08:08 has no hits.
BO09728.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:05 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-PA | 704..1638 | 18..950 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:25:59 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-PA | 704..1638 | 18..950 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:03 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 801..1732 | 19..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:49 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 801..1732 | 19..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:49 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17088723..17088945 | 19..241 | 100 | <- | Plus |
| 2R | 17089005..17089151 | 242..388 | 99 | <- | Plus |
| 2R | 17089210..17089658 | 389..837 | 99 | <- | Plus |
| 2R | 17089714..17089826 | 838..950 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:03 Download gff for
BO09728.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12976228..12976450 | 19..241 | 100 | <- | Plus |
| arm_2R | 12976510..12976656 | 242..388 | 99 | <- | Plus |
| arm_2R | 12976715..12977163 | 389..837 | 99 | <- | Plus |
| arm_2R | 12977219..12977331 | 838..950 | 96 | | Plus |
BO09728.5prime Sequence
925 bp (823 high quality bases) assembled on 2006-01-28
> BO09728.5prime
GAAGTTATCAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGC
CCGTCACCGAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAG
GTCGCCACCATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGAC
TGTGATCTGCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCT
TTAAGTTTGCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAA
TTGGCCAAGGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGC
CCACCTTACCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGG
AGATCCTCCGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGG
CGTGATGGTCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGT
GGAGCTCGTCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGC
ACGCAGATCTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGC
ATGGCATGCAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGAC
CACCGGCGGCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATT
TCGCTAGAGAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAG
ACGGTCCACGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGT
GCGATCCGTGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGT
TCAAACGTGCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCA
AACTTCCCCTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGG
CGTTAGTACGACATTCCCGTGCACG
BO09728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8946-PB | 1638 | Sply-RB | 1..889 | 17..905 | 4270 | 99.2 | Plus |
| CG8946-PA | 1638 | Sply-RA | 1..889 | 17..905 | 4270 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1070 | 17..925 | 4420 | 99.1 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1007 | 17..925 | 4420 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 832..171 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 170..17 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089565..17089659 | 925..832 | 380 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:29:27 has no hits.
BO09728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:06 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-PA | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:00 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-PA | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:56 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1007 | 9..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:51 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1007 | 9..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:51 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089565..17089658 | 833..925 | 95 | <- | Minus |
| 2R | 17089714..17090375 | 171..832 | 99 | <- | Minus |
| 2R | 17091359..17091516 | 9..170 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:56 Download gff for
BO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12977070..12977163 | 833..925 | 95 | <- | Minus |
| arm_2R | 12977219..12977880 | 171..832 | 99 | <- | Minus |
| arm_2R | 12978864..12979021 | 9..170 | 96 | | Minus |
BO09728.complete Sequence
1669 bp (1669 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ631559
> BO09728.complete
GAAGTTATCAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGC
CCGTCACCGAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAG
GTCGCCACCATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGAC
TGTGATCTGCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCT
TTAAGTTTGCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAA
TTGGCCAAGGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGC
CCACCTTACCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGG
AGATCCTCCGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGG
CGTGATGGTCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGT
GGAGCTCGTCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGC
ACGCAGATCTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGC
ATGGCATGCAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGAC
CACCGGCGGCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATT
TCGCTAGAGAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAG
ACGGTCCACGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGT
GCGATCCGTGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGT
TCAAACGTGCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCA
AACTTCCCCTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGG
CGTTAAGTACGACATTCCCGTGCACGTGGACGCCTGCCTGGGCAGCTTTG
TGGTGGCCTTGGTCCGCAACGCCGGCTATAAGCTGCGTCCCTTCGACTTT
GAGGTCAAGGGAGTGACCAGTATCTCCGCTGATACCCACAAGTATGGTTT
CGCGCCCAAGGGATCATCGGTGATCCTTTACTCGGACAAGAAGTACAAGG
ACCATCAGTTCACTGTGACTACTGACTGGCCTGGCGGCGTGTATGGTTCT
CCCACAGTCAACGGTTCCCGTGCCGGAGGTATTATCGCCGCCTGCTGGGC
TACCATGATGAGCTTTGGCTATGATGGTTATCTGGAAGCCACTAAGCGCA
TTGTGGATACGGCGCGCTATATCGAGAGGGGCGTTCGCGACATCGATGGC
ATCTTTATCTTTGGCAAGCCAGCTACTTCAGTGATTGCCCTGGGTTCCAA
TGTGTTTGACATTTTCCGGCTATCGGATTCGCTGTGCAAACTGGGCTGGA
ACCTAAATGCGCTGCAGTTTCCATCTGGTATCCACCTGTGCGTGACGGAC
ATGCACACACAGCCCGGAGTCGCGGATAAATTCATTGCCGATGTGCGCAG
CTGTACGGCGGAGATCATGAAGGATCCCGGCCAGCCCGTCGTTGGAAAGA
TGGCTCTCTACGGCATGGCACAGAGCATACCCGACCGTTCGGTGATCGGA
GAAGTGACTCGCCTATTCCTGCACTCCATGTACTACACTCCCAGCCAGAA
AGCAAGCTTTCTAGACCAT
BO09728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 1638 | CG8946-PA | 1..1635 | 17..1651 | 8055 | 99.5 | Plus |
| Sply-RB | 1638 | CG8946-PB | 1..1635 | 17..1651 | 8055 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1795 | 17..1651 | 8055 | 99.5 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1732 | 17..1651 | 8055 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 832..171 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17089210..17089659 | 1281..832 | 2205 | 99.3 | Minus |
| 2R | 25286936 | 2R | 17088723..17088946 | 1651..1428 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 170..17 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089005..17089152 | 1428..1281 | 725 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:12 has no hits.
BO09728.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:46 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 1..1638 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:09 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 154..1794 | 9..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:56 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 98..1732 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:46 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 154..1794 | 9..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:13 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 98..1732 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:13 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17088721..17088945 | 1429..1653 | 99 | <- | Minus |
| 2R | 17089005..17089151 | 1282..1428 | 99 | <- | Minus |
| 2R | 17089210..17089658 | 833..1281 | 99 | <- | Minus |
| 2R | 17089714..17090375 | 171..832 | 99 | <- | Minus |
| 2R | 17091359..17091512 | 17..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:56 Download gff for
BO09728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12976226..12976450 | 1429..1653 | 99 | <- | Minus |
| arm_2R | 12976510..12976656 | 1282..1428 | 99 | <- | Minus |
| arm_2R | 12976715..12977163 | 833..1281 | 99 | <- | Minus |
| arm_2R | 12977219..12977880 | 171..832 | 99 | <- | Minus |
| arm_2R | 12978864..12979017 | 17..170 | 98 | | Minus |
BO09728.pep Sequence
Translation from 16 to 1669
> BO09728.pep
MRPFSGSDCLKPVTEGINRAFGAKEPWQVATITATTVLGGVWLWTVICQD
ENLYIRGKRQFFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYS
ETLPEKGLSKEEILRLVDEHLKTGHYNWRDGRVSGAVYGYKPDLVELVTE
VYGKASYTNPLHADLFPGVCKMEAEVVRMACNLFHGNSASCGTMTTGGTE
SIVMAMKAYRDFAREYKGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDV
DPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVKYDI
PVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGS
SVILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSF
GYDGYLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIF
RLSDSLCKLGWNLNALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEI
MKDPGQPVVGKMALYGMAQSIPDRSVIGEVTRLFLHSMYYTPSQKASFLD
H
BO09728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-PA | 545 | CG8946-PA | 1..545 | 1..545 | 2876 | 100 | Plus |
| Sply-PB | 545 | CG8946-PB | 1..545 | 1..545 | 2876 | 100 | Plus |
