Clone Sequence Records
BO09731.3prime Sequence
929 bp (781 high quality bases) assembled on 2006-01-28
> BO09731.3prime
ATGGTCTAGTAAGCTTGCATCGATTTGCGTGATGGAAGCCTCGTCATTGC
TGGAACATCGACTGCTCTCGCCATCCGTGCGATACTTGATGGAGTCAATG
ATCTCCACATCGATGTCACAATTGCCCTGATTGCCGCTCGTTCCCTCCAA
ACCGGCACCCGTATCACTGGAATTTCGTTCCAGTGAATCTTCATCGCAAA
GATCGGGTGCCGAAAGTGAGGCACTAACCGATGCCGATTCCGACTTGGCA
TCGATATCCTGACTCTGCACCTGCGCCTGATGGGCGGCAAACTGACTGTA
AAGGCGTGGCAGATGTTGCAACATATAGCTGGCGCCCGATTTCGATAAGT
TTGCAGCTGCAGCAGCGGCAGCAGCGGCTGCCGAAAGATTAGCAGCCGTA
CTGGACGGTTGATTTTCCTTAGTCTCGCCCAGATCATAGTATTTGGCATA
GTGCTCGAATTTGTTGCCCAATGTGCTGGTGGTCACTGCACCACCACCGC
CGGCGTTTGATCCTGCCGCATTGGCGCACAGATTGATGGCATCGTTTTGG
GCCGCCTTGGGTATGGGTACAGTGAAGGCGGAGCCATGACGCTGTTTGCT
CAGCAAATTACTGGCCAAACCGGAAGCGGAAGTGGCGCCCGAGCTGGAAC
ACGAGCCGGGTGAACCTTCTTCGGCAAGTGCATTATTGCTACTCGAAAGC
GGTGAGACATTCTCCTTCTTTCTATCGTATATATGTCCGGAAACGCGAAG
ATCGATGAAGAAGTGCAACGGATCGATGCCGTAGGGTGCATAAAGTGGTG
GATACCAAACCGGTGGTGGTGGCGGCAGGACCAAATCCTGTGGTGGCAAC
GATGCCGCCGGCGGTGTATTGTCCTGCAAGTTAGTGTCGACGGCACCACC
CAGAACCACAGTCTTATTGCCAGCCGTTG
BO09731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-PA | 1659 | CG15478-RA | 771..1656 | 904..19 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-RB | 1855 | CG15478-RB | 900..1810 | 929..19 | 4495 | 99.7 | Minus |
| CG15478-RA | 1851 | CG15478-RA | 896..1806 | 929..19 | 4495 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7712828..7713738 | 19..929 | 4495 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:39:54 has no hits.
BO09731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:12 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-PA | 746..1659 | 16..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:08 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-PA | 746..1659 | 16..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:39 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 896..1816 | 8..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:19 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 896..1816 | 8..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:19 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7712818..7713738 | 8..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:39 Download gff for
BO09731.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7606851..7607771 | 8..929 | 99 | | Plus |
BO09731.5prime Sequence
963 bp (814 high quality bases) assembled on 2006-01-28
> BO09731.5prime
GAAGTTATCAGTCGACATGAAGGACAGCAGTAACAGCATCTCGTCGAGCA
ACACAGCAGGGATGCCATGCTCAACGGGAGGAGCAGTAGCGTCAGCAGGG
GTAACCACCAGCAATGCCACGCCCAGTGCGCCTAGTACGCCCACAACAGC
AGCAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCATCTGCTGCAGATCCAA
CCGCAACGAATCCGCAAAATCCGCAGCAACGCAGCAAGAGCAACATCCAT
GAGCTAAGAAATCAGGACTACGTCAGTCGTTTAATGGCAGCCACACCACC
GTATTTGTATTCCGCACCCGTGGGACCAAATAATTTCTTTTTCAGCGATA
TGCTGCGTTCCTTGGTGCAAGCGCGAAATAATGAGACGGCGCGTGTCTTG
CAGCTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGCACAGCAACAACA
GCAGCAGCAACATCAGGCCGCCTTGGTGAGGCGGCCAAGAAAACGCTCCT
GGTCGCATCGTCCATACTACGAGCAATTGCGGGAGCGACGCGATGCAGAG
GAGAAGCAGCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGCAACATCA
ACAGCATCAGCAGCAGCAACATCAGCAACTTCAGCAGCAACTGGTGCCGG
AGAAACCTCTAGAGCTGACCAATAAGGCAATGACACCCTATGGCTATGCC
AAAATGGAAACCAAACCAGGTGCTATGGGTATAACACCGCCAACGCCAAC
GACGGCACCACCAACGGCTGGCAATAAGACTGGTGGTCTGGGTGGTGCCG
TCGACACTAACCTGCANGACAATACACCGCCGGCGGCATCGTTGCCACCA
CAGGATTTGGTCCTGCCGCCACCACCACCGGTTTGGTATCCACCACTTTA
TGCACCCTACGGCATCGATCCGTTGCACTTCTTCATCGATCTTCGCGTTT
TCGGACATATATA
BO09731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-PA | 1659 | CG15478-RA | 1..947 | 17..963 | 4691 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-RB | 1855 | CG15478-RB | 155..1101 | 17..963 | 4709 | 99.8 | Plus |
| CG15478-RA | 1851 | CG15478-RA | 151..1097 | 17..963 | 4709 | 99.8 | Plus |
| rn-RC | 3565 | CG42277-RC | 316..388 | 580..652 | 185 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7713537..7714483 | 963..17 | 4709 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7277092..7277164 | 652..580 | 185 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:12:51 has no hits.
BO09731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:13 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:09 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:23 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 146..1096 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:19 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 146..1096 | 9..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:19 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7713538..7714488 | 9..962 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:23 Download gff for
BO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7607571..7608521 | 9..962 | 99 | | Minus |
BO09731.complete Sequence
1690 bp assembled on 2008-08-14
> BO09731.complete
GAAGTTATCAGTCGACATGAAGGACAGCAGTAACAGCATCTCGTCGAGCA
ACACAGCAGGGATGCCATGCTCAACGGGAGGAGCAGTAGCGTCAGCAGGG
GTAACCACCAGCAATGCCACGCCCAGTGCGCCTAGTACGCCCACAACAGC
AGCAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCATCTGCTGCAGATCCAA
CCGCAACGAATCCGCAAAATCCGCAGCAACGCAGCAAGAGCAACATCCAT
GAGCTAAGAAATCAGGACTACGTCAGTCGTTTAATGGCAGCCACACCACC
GTATTTGTATTCCGCACCCGTGGGACCAAATAATTTCTTTTTCAGCGATA
TGCTGCGTTCCTTGGTGCAAGCGCGAAATAATGAGACGGCGCGTGTCTTG
CAGCTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGCACAGCAACAACA
GCAGCAGCAACATCAGGCCGCCTTGGTGAGGCGGCCAAGAAAACGCTCCT
GGTCGCATCGTCCATACTACGAGCAATTGCGGGAGCGACGCGATGCAGAG
GAGAAGCAGCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGCAACATCA
ACAGCATCAGCAGCAGCAACATCAGCAACTTCAGCAGCAACTGGTGCCGG
AGAAACCTCTAGAGCTGACCAATAAGGCAATGACACCCTATGGCTATGCC
AAAATGGAAACCAAACCAGGTGCTATGGGTATAACACCGCCAACGCCAAC
GACGGCACCACCAACGGCTGGCAATAAGACTGGTGGTCTGGGTGGTGCCG
TCGACACTAACCTGCAGGACAATACACCGCCGGCGGCATCGTTGCCACCA
CAGGATTTGGTCCTGCCGCCACCACCACCGGTTTGGTATCCACCACTTTA
TGCACCCTACGGCATCGATCCGTTGCACTTCTTCATCGATCTTCGCGTTT
CCGGACATATATACGATAGAAAGAAGGAGAATGTCTCACCGCTTTCGAGT
AGCAATAATGCACTTGCCGAAGAAGGTTCACCCGGCTCGTGTTCCAGCTC
GGGCGCCACTTCCGCTTCCGGTTTGGCCAGTAATTTGCTGAGCAAACAGC
GTCATGGCTCCGCCTTCACTGTACCCATACCCAAGGCGGCCCAAAACGAT
GCCATCAATCTGTGCGCCAATGCGGCAGGATCAAACGCCGGCGGTGGTGG
TGCAGTGACCACCAGCACATTGGGCAACAAATTCGAGCACTATGCCAAAT
ACTATGATCTGGGCGAGACTAAGGAAAATCAACCGTCCAGTACGGCTGCT
AATCTTTCGGCAGCCGCTGCTGCCGCTGCTGCAGCTGCAAACTTATCGAA
ATCGGGCGCCAGCTATATGTTGCAACATCTGCCACGCCTTTACAGTCAGT
TTGCCGCCCATCAGGCGCAGGTGCAGAGTCAGGATATCGATGCCAAGTCG
GAATCGGCATCGGTTAGTGCCTCACTTTCGGCACCCGATCTTTGCGATGA
AGATTCACTGGAACGAAATTCCAGTGATACGGGTGCCGGTTTGGAGGGAA
CGAGCGGCAATCAGGGCAATTGTGACATCGATGTGGAGATCATTGACTCC
ATCAAGTATCGCACGGATGGCGAGAGCAGTCGATGTTCCAGCAATGACGA
GGCTTCCATCACGCAAATCGATGCAAGCTTACTAGACCAT
BO09731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-RB | 1659 | CG15478-PB | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| CG15478-RA | 1659 | CG15478-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| rn-RC | 2079 | CG42277-PC | 255..327 | 580..652 | 185 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-RB | 1855 | CG15478-RB | 155..1810 | 17..1672 | 8280 | 100 | Plus |
| CG15478-RA | 1851 | CG15478-RA | 151..1806 | 17..1672 | 8280 | 100 | Plus |
| rn-RC | 3565 | CG42277-RC | 316..388 | 580..652 | 185 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7712828..7714483 | 1672..17 | 8280 | 100 | Minus |
| 3R | 32079331 | 3R | 7277092..7277164 | 652..580 | 185 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:47:46 has no hits.
BO09731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:03 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 142..1812 | 9..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:10 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 151..1806 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:45 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 147..1802 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:22 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15478-RA | 151..1806 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:22 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7712825..7714483 | 17..1674 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:10 Download gff for
BO09731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7606858..7608516 | 17..1674 | 99 | | Minus |
BO09731.pep Sequence
Translation from 16 to 1690
> BO09731.pep
MKDSSNSISSSNTAGMPCSTGGAVASAGVTTSNATPSAPSTPTTAAAAAA
AAAAAASAADPTATNPQNPQQRSKSNIHELRNQDYVSRLMAATPPYLYSA
PVGPNNFFFSDMLRSLVQARNNETARVLQLQQQQQQQQQQAQQQQQQQHQ
AALVRRPRKRSWSHRPYYEQLRERRDAEEKQQQHQQQQQQQQQHQQHQQQ
QHQQLQQQLVPEKPLELTNKAMTPYGYAKMETKPGAMGITPPTPTTAPPT
AGNKTGGLGGAVDTNLQDNTPPAASLPPQDLVLPPPPPVWYPPLYAPYGI
DPLHFFIDLRVSGHIYDRKKENVSPLSSSNNALAEEGSPGSCSSSGATSA
SGLASNLLSKQRHGSAFTVPIPKAAQNDAINLCANAAGSNAGGGGAVTTS
TLGNKFEHYAKYYDLGETKENQPSSTAANLSAAAAAAAAAANLSKSGASY
MLQHLPRLYSQFAAHQAQVQSQDIDAKSESASVSASLSAPDLCDEDSLER
NSSDTGAGLEGTSGNQGNCDIDVEIIDSIKYRTDGESSRCSSNDEASITQ
IDASLLDH
BO09731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15478-PB | 552 | CG15478-PB | 1..552 | 1..552 | 2842 | 100 | Plus |
| CG15478-PA | 552 | CG15478-PA | 1..552 | 1..552 | 2842 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 118..513 | 114..487 | 221 | 24.7 | Plus |
| Smr-PE | 3601 | CG4013-PE | 118..513 | 114..487 | 221 | 24.7 | Plus |
| Smr-PD | 3601 | CG4013-PD | 118..513 | 114..487 | 221 | 24.7 | Plus |
| Smr-PF | 3601 | CG4013-PF | 3..179 | 47..229 | 178 | 31.4 | Plus |
| Smr-PE | 3601 | CG4013-PE | 3..179 | 47..229 | 178 | 31.4 | Plus |
