Clone Sequence Records
BO09733.3prime Sequence
914 bp (862 high quality bases) assembled on 2006-01-28
> BO09733.3prime
ATGGTCTAGAAAGCTTGCTACAAAACACGAGTGGCCCGAACACTGTGTGA
GATTCTTGAGACGCAACGAATACAAAGCTCGTTCAATGGGCAGCAGATCG
TAGGCAATGTTGGTCATTTGAAAGGGATCCAGTTGCAGGTCATATGCCTC
CAAAAAGTTCTCGTTATCCCGAAATTCGCAGTAAATGCGATCCTCGCGAT
GGCGAATATTTCTTAAGCAGGCGTAGGTGTTGTTCCATGCATCCTGGCAA
TGGCAATCCGCTGCGGGGGTGCACTGCGCCAATCGATCCTTTTCTGGCCA
AGGGCATTCAGGATTAAAGGTGGCCAGAGTTCCCTCGCCCCAGTACTCGA
TCAACAGGGAACGCTCGAAAAATGGAACCCTTCGCCTTTTGTTGAGCAAA
AGCTCGTGAAATGATTGCCCATCCATGTAGGATGGTGTGTCGATGTCGGC
CCAGGCCAATATAGTCGGTGCCAAGTCCACTAGACTGACGGCAGTGTCAA
TGTGGCTCTCAGGTGCTATTCCAGGTCCCCGGATTAGCAGCGGTACGTTA
ATATCCGTTTCGTAGGGCTGTCTCTTATCGAAGGGCTGTGCAAACTGCCC
CACATGGTAGCCGTTATCCGAGGTGTAGATAATGTAGGTGTTCTCCAACG
ATTGCGTATCGTTTAGCACTCCCATCAAGGTGACGACCAGTTCGTCCACG
GCCAGCAGCGTTTCCCAGCGTTTCTGGAAATACGTGTCTATGGTGTTGAT
GGTTTCGTTGGGCAGACGACGTGCTGCTCGCACCAACCAGTGCTTATCCT
GCTTAACTTGATTGAAGCTGGGTGTGCGCAGGGCTTCGATATGGGAGAAC
ACACCCTCATGTCTTGTTGCCGGAGTGAAGGGTTCATGGGCTGCCGGGGG
GGCGACCATCGCGA
BO09733.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-PA | 1479 | CG30059-RA | 581..1476 | 914..19 | 4430 | 99.7 | Minus |
| CG18278-PA | 1479 | CG18278-RA | 581..1476 | 914..19 | 4430 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1683 | CG30059-RA | 657..1552 | 914..19 | 4450 | 99.8 | Minus |
| CG18278-RA | 1677 | CG18278-RA | 651..1546 | 914..19 | 4450 | 99.8 | Minus |
| CG33470-RA | 1159 | CG33470-RA | 974..1116 | 19..161 | 715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13408373..13409011 | 160..798 | 3195 | 100 | Plus |
| 2R | 25286936 | 2R | 13413100..13413738 | 160..798 | 3195 | 100 | Plus |
| 2R | 25286936 | 2R | 13408173..13408315 | 19..161 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 13412900..13413042 | 19..161 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 13409063..13409184 | 793..914 | 565 | 97.5 | Plus |
| 2R | 25286936 | 2R | 13413790..13413911 | 793..914 | 565 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:34 has no hits.
BO09733.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:13 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-PA | 582..1479 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:10 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-PA | 582..1479 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:54:42 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 652..1546 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:08 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 652..1546 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:08 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13408173..13408313 | 19..159 | 100 | <- | Plus |
| 2R | 13408373..13409010 | 160..797 | 100 | <- | Plus |
| 2R | 13409068..13409183 | 798..913 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:54:42 Download gff for
BO09733.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9295878..9296515 | 160..797 | 100 | <- | Plus |
| arm_2R | 9296573..9296688 | 798..913 | 98 | | Plus |
| arm_2R | 9295678..9295818 | 19..159 | 100 | <- | Plus |
BO09733.5prime Sequence
907 bp (780 high quality bases) assembled on 2006-01-28
> BO09733.5prime
GAAGTTATCTGTCGACATGATCACCTTAGCCCCTCTGATCGTCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCGCACTGGCGGCGTGCCCTGGAGCCCCGGGCTTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGCGCTGGGGATGTGCCAAAGGGTTGGAATAACTTCTACGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATACCG
GCAACGTGCACTACGAGTCGACCTACCTATCCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAAC
GATACGCAATCGTTGGAGAACACCTACATTATCTACACCTCGGATAACGG
CTACCAT
BO09733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-PA | 1479 | CG30059-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG18278-PA | 1479 | CG18278-RA | 1..891 | 17..907 | 4105 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1683 | CG30059-RA | 76..967 | 16..907 | 4460 | 100 | Plus |
| CG18278-RA | 1677 | CG18278-RA | 70..961 | 16..907 | 4250 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13413790..13414489 | 718..19 | 3485 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13409063..13409762 | 718..19 | 3275 | 97.9 | Minus |
| 2R | 25286936 | 2R | 13408817..13409011 | 907..713 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 13413544..13413738 | 907..713 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:26:04 has no hits.
BO09733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:14 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:12 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:19 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 68..967 | 7..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:19 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 68..967 | 7..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:19 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13413544..13413737 | 714..907 | 100 | <- | Minus |
| 2R | 13413795..13414489 | 19..713 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:19 Download gff for
BO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9301049..9301242 | 714..907 | 100 | <- | Minus |
| arm_2R | 9301300..9301994 | 19..713 | 100 | | Minus |
BO09733.complete Sequence
1510 bp assembled on 2008-08-15
GenBank Submission: FJ631560
> BO09733.complete
GAAGTTATCTGTCGACATGATCACCTTAGCCCCTCTGATCGTCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCGCACTGGCGGCGTGCCCTGGAGCCCCGGGCTTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGCGCTGGGGATGTGCCAAAGGGTTGGAATAACTTCTACGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATACCG
GCAACGTGCACTACGAGTCGACCTACCTATCCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAAC
GATACGCAATCGTTGGAGAACACCTACATTATCTACACCTCGGATAACGG
CTACCATGTGGGGCAGTTTGCACAGCCCTTCGATAAGAGACAGCCCTACG
AAACGGATATTAACGTACCGCTGCTAATCCGGGGACCTGGAATAGCACCT
GAGAGCCACATTGACACTGCCGTCAGTCTAGTGGACTTGGCACCGACTAT
ATTGGCCTGGGCCGACATCGACACACCATCCTACATGGATGGGCAATCAT
TTCACGAGCTTTTGCTCAACAAAAGGCGAAGGGTTCCATTTTTCGAGCGT
TCCCTGTTGATCGAGTACTGGGGCGAGGGAACTCTGGCCACCTTTAATCC
TGAATGCCCTTGGCCAGAAAAGGATCGATTGGCGCAGTGCACCCCCGCAG
CGGATTGCCATTGCCAGGATGCATGGAACAACACCTACGCCTGCTTAAGA
AATATTCGCCATCGCGAGGATCGCATTTACTGCGAATTTCGGGATAACGA
GAACTTTTTGGAGGCATATGACCTGCAACTGGATCCCTTTCAAATGACCA
ACATTGCCTACGATCTGCTGCCCATTGAACGAGCTTTGTATTCGTTGCGT
CTCAAGAATCTCACACAGTGTTCGGGCCACTCGTGTTTTGTAGCAAGCTT
TCTAGACCAT
BO09733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1479 | CG30059-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
| CG18278-RA | 1479 | CG18278-PA | 1..1476 | 17..1492 | 7170 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-RA | 1683 | CG30059-RA | 76..1552 | 16..1492 | 7385 | 100 | Plus |
| CG18278-RA | 1677 | CG18278-RA | 70..1546 | 16..1492 | 7175 | 99.1 | Plus |
| CG33470-RA | 1159 | CG33470-RA | 974..1116 | 1492..1350 | 715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13413790..13414489 | 718..19 | 3485 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13409063..13409762 | 718..19 | 3275 | 97.9 | Minus |
| 2R | 25286936 | 2R | 13408373..13409011 | 1351..713 | 3195 | 100 | Minus |
| 2R | 25286936 | 2R | 13413100..13413738 | 1351..713 | 3195 | 100 | Minus |
| 2R | 25286936 | 2R | 13408173..13408315 | 1492..1350 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 13412900..13413042 | 1492..1350 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:33 has no hits.
BO09733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:46 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 55..1539 | 7..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:02 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 77..1552 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:33 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 64..1539 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:06 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30059-RA | 77..1552 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:06 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13412898..13413040 | 1352..1494 | 98 | <- | Minus |
| 2R | 13413100..13413737 | 714..1351 | 100 | <- | Minus |
| 2R | 13413795..13414490 | 17..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:02 Download gff for
BO09733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9300403..9300545 | 1352..1494 | 98 | <- | Minus |
| arm_2R | 9300605..9301242 | 714..1351 | 100 | <- | Minus |
| arm_2R | 9301300..9301995 | 17..713 | 99 | | Minus |
BO09733.pep Sequence
Translation from 16 to 1510
> BO09733.pep
MITLAPLIVLVLACLGNTASEKLPNILLILSDDQDVELRGMFPMEHTIEM
LGFGGALFHNAYTPSPICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHW
RRALEPRALPYILQQHGYNTFFGGKYLNQYWGAGDVPKGWNNFYGLHGNS
RYYNYTLRENTGNVHYESTYLSDLLRDRAADFLRNATQSSEPFFAMVAPP
AAHEPFTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARRLPNETIN
TIDTYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQ
FAQPFDKRQPYETDINVPLLIRGPGIAPESHIDTAVSLVDLAPTILAWAD
IDTPSYMDGQSFHELLLNKRRRVPFFERSLLIEYWGEGTLATFNPECPWP
EKDRLAQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNENFLEA
YDLQLDPFQMTNIAYDLLPIERALYSLRLKNLTQCSGHSCFVASFLDH
BO09733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30059-PA | 492 | CG30059-PA | 1..492 | 1..492 | 2682 | 100 | Plus |
| CG18278-PA | 492 | CG18278-PA | 1..492 | 1..492 | 2665 | 99 | Plus |
| Sulf1-PC | 1114 | CG6725-PC | 47..407 | 17..373 | 687 | 40.9 | Plus |
| Sulf1-PB | 1114 | CG6725-PB | 47..407 | 17..373 | 687 | 40.9 | Plus |
| Sulf1-PA | 1114 | CG6725-PA | 47..407 | 17..373 | 687 | 40.9 | Plus |
