Clone Sequence Records
BO09740.3prime Sequence
786 bp (785 high quality bases) assembled on 2006-01-28
> BO09740.3prime
ATGGTCTAGAAAGCTTGCCTTTTGTTGCTGACGTTGCTTTGATTGCAGAA
GGGCGGACAATACCAAAGCAGTATCTAGCTCCTGCTGATTACCAGGTTCG
TTGTCCAAAGATATTTCAGCAGCACGTTCGTGAAACCGAGCAAGGACGCG
AGAGCGATAGTCCACACTGCCCGCCAGCGGATTTCCAGTAAGTCGAAGGG
TCTCTAGAAGCGGAAGATTGGCGACATGATTAACTTCATCAAGCTCTTCG
ATCTGATTGGAACTAAGGTCCAGATTAACCAGTGAAAGTAGTTTTCGGAG
ACCACTTAGTGTCTTGATTTTGTTCTGAGCTAACTTCAGAGTGACTAGGT
TTCCCATCGTTAAATGCCAGTCCACACACTCTGCTATAAGATTCCCAGAA
AGCGAAAGCAACTGGAGTTGAGGAAGTTCGGCCAGATTTTGGACGGTCCG
TATTCGATTCTGGTCAAGGATTAGGCGTCTGAGTTTTGGAGCTGTTCGTA
CACTGCCATCGATTTGGGTTAGCAAATTGCCTGTCAGGTCGAGTTCTGTT
ATCTCTTGCCACGCATCCGCACTGACCAAGGCACTACCATTAGAAGTGGA
GGGACCGGATCCGGAGGGGGATGCAAGGATAGTCTCTGGCAGCAGGCTTG
GCACATCGCAGTGCTTGTGCAGATTGTCGCAGAGCAGGACTTGATTTATG
TTCTGTATGGTTGTGTTATGAACACAGATTGTCTGGAGAGTCGGCTTCAG
AAGTTCGATGTCCACAATGTTTTCGGTAGACAAGGC
BO09740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-PA | 1476 | CG11807-RA | 706..1473 | 786..19 | 3615 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-RC | 1993 | CG11807-RC | 922..1689 | 786..19 | 3705 | 98.8 | Minus |
| CG11807-RB | 2106 | CG11807-RB | 976..1743 | 786..19 | 3705 | 98.8 | Minus |
| CG11807-RA | 1945 | CG11807-RA | 815..1582 | 786..19 | 3705 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15203277..15203901 | 786..162 | 3005 | 98.7 | Minus |
| 2R | 25286936 | 2R | 15203960..15204103 | 162..19 | 705 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:03 has no hits.
BO09740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:31 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-PA | 706..1476 | 16..786 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:30 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-PA | 706..1476 | 16..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:42 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 815..1590 | 11..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:26 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 815..1590 | 11..786 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:26 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15203277..15203901 | 162..786 | 98 | -> | Minus |
| 2R | 15203961..15204111 | 11..161 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:42 Download gff for
BO09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11090782..11091406 | 162..786 | 98 | -> | Minus |
| arm_2R | 11091466..11091616 | 11..161 | 96 | | Minus |
BO09740.5prime Sequence
950 bp (828 high quality bases) assembled on 2006-01-28
> BO09740.5prime
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAAAACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGANCATCTGCACAAGCACTGC
GATGTGCCAAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTCCACTTTCTATGGTAGTGCCTTGGTCAGTGCGGATGCGTGGC
BO09740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-PA | 1476 | CG11807-RA | 1..898 | 17..914 | 4346 | 99.3 | Plus |
| CG11807-PA | 1476 | CG11807-RA | 902..934 | 918..950 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-RC | 1993 | CG11807-RC | 217..1150 | 17..950 | 4539 | 99.1 | Plus |
| CG11807-RB | 2106 | CG11807-RB | 271..1204 | 17..950 | 4539 | 99.1 | Plus |
| CG11807-RA | 1945 | CG11807-RA | 110..1043 | 17..950 | 4539 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15203020..15203505 | 465..950 | 2329 | 98.6 | Plus |
| 2R | 25286936 | 2R | 15201892..15202129 | 231..468 | 1160 | 99.2 | Plus |
| 2R | 25286936 | 2R | 15201616..15201831 | 17..232 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:29:17 has no hits.
BO09740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:32 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:31 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:55 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 108..1043 | 13..950 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:50 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 108..1043 | 13..950 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:50 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15201614..15201831 | 13..232 | 99 | -> | Plus |
| 2R | 15201894..15202127 | 233..466 | 99 | -> | Plus |
| 2R | 15203022..15203505 | 467..950 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:55 Download gff for
BO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11089119..11089336 | 13..232 | 99 | -> | Plus |
| arm_2R | 11089399..11089632 | 233..466 | 99 | -> | Plus |
| arm_2R | 11090527..11091010 | 467..950 | 98 | | Plus |
BO09740.complete Sequence
1507 bp (1507 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631561
> BO09740.complete
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAAAACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGACAATCTGCACAAGCACTGC
GATGTGCCAAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTCCACTTCTAATGGTAGTGCCTTGGTCAGTGCGGATGCGTGGC
AAGAGATAACAGAACTCGACCTGACAGGCAATTTGCTAACCCAAATCGAT
GGCAGTGTACGAACAGCTCCAAAACTCAGACGCCTAATCCTTGACCAGAA
TCGAATACGGACCGTCCAAAATCTGGCCGAACTTCCTCAACTCCAGTTGC
TTTCGCTTTCTGGGAATCTTATAGCAGAGTGTGTGGACTGGCATTTAACG
ATGGGAAACCTAGTCACTCTGAAGTTAGCTCAGAACAAAATCAAGACACT
AAGTGGTCTCCGAAAACTACTTTCACTGGTTAATCTGGACCTTAGTTCCA
ATCAGATCGAAGAGCTTGATGAAGTTAATCATGTCGCCAATCTTCCGCTT
CTAGAGACCCTTCGACTTACTGGAAATCCGCTGGCGGGCAGTGTGGACTA
TCGCTCTCGCGTCCTTGCTCGGTTTCACGAACGTGCTGCTGAAATATCTT
TGGACAACGAACCTGGTAATCAGCAGGAGCTAGATACTGCTTTGGTATTG
TCCGCCCTTCTGCAATCAAAGCAACGTCAGCAACAAAAGGCAAGCTTTCT
AGACCAT
BO09740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-RC | 1476 | CG11807-PC | 1..1473 | 17..1489 | 7185 | 99.2 | Plus |
| CG11807-RB | 1476 | CG11807-PB | 1..1473 | 17..1489 | 7185 | 99.2 | Plus |
| CG11807-RA | 1476 | CG11807-PA | 1..1473 | 17..1489 | 7185 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-RC | 1993 | CG11807-RC | 217..1689 | 17..1489 | 7185 | 99.2 | Plus |
| CG11807-RB | 2106 | CG11807-RB | 271..1743 | 17..1489 | 7185 | 99.2 | Plus |
| CG11807-RA | 1945 | CG11807-RA | 110..1582 | 17..1489 | 7185 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15203020..15203901 | 465..1346 | 4275 | 99 | Plus |
| 2R | 25286936 | 2R | 15201892..15202129 | 231..468 | 1160 | 99.2 | Plus |
| 2R | 25286936 | 2R | 15201616..15201831 | 17..232 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 15203960..15204103 | 1346..1489 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:27 has no hits.
BO09740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:36 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 1..1476 | 17..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:42 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 91..1573 | 13..1497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:15 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 110..1582 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:37 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 91..1573 | 13..1497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:40 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 110..1582 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:40 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15201616..15201831 | 17..232 | 100 | -> | Plus |
| 2R | 15201894..15202127 | 233..466 | 99 | -> | Plus |
| 2R | 15203022..15203901 | 467..1346 | 98 | -> | Plus |
| 2R | 15203961..15204103 | 1347..1491 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:15 Download gff for
BO09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11089121..11089336 | 17..232 | 100 | -> | Plus |
| arm_2R | 11089399..11089632 | 233..466 | 99 | -> | Plus |
| arm_2R | 11090527..11091406 | 467..1346 | 98 | -> | Plus |
| arm_2R | 11091466..11091608 | 1347..1491 | 97 | | Plus |
BO09740.pep Sequence
Translation from 16 to 1507
> BO09740.pep
MACYYRQHADTTVTVPKFSNESSSGGVTYYDIKVRVGKVEWLVERRYRDF
ANLHEKLVGEISISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYF
RTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSKKEYNLSALE
VYAISERLSLPCPPSLDRGGKYDFSHVLDFCTQLVALVVTPVKDNASYAQ
DYNTVDVPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKP
TLQTICVHNTTIQNINQVLLCDNLHKHCDVPSLLPETILASPSGSGPSTS
NGSALVSADAWQEITELDLTGNLLTQIDGSVRTAPKLRRLILDQNRIRTV
QNLAELPQLQLLSLSGNLIAECVDWHLTMGNLVTLKLAQNKIKTLSGLRK
LLSLVNLDLSSNQIEELDEVNHVANLPLLETLRLTGNPLAGSVDYRSRVL
ARFHERAAEISLDNEPGNQQELDTALVLSALLQSKQRQQQKASFLDH
BO09740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-PC | 491 | CG11807-PC | 1..491 | 1..491 | 2483 | 100 | Plus |
| CG11807-PB | 491 | CG11807-PB | 1..491 | 1..491 | 2483 | 100 | Plus |
| CG11807-PA | 491 | CG11807-PA | 1..491 | 1..491 | 2483 | 100 | Plus |
| CG9044-PB | 1295 | CG9044-PB | 6..328 | 123..471 | 229 | 25.4 | Plus |
| CG9044-PC | 1318 | CG9044-PC | 6..328 | 123..471 | 229 | 25.4 | Plus |
