Clone BO09742 Report

Search the DGRC for BO09742

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:42
Vector:pDNR-Dual
Associated Gene/Transcripttra2-RA
Protein status:BO09742.pep: validated full length
Sequenced Size:826

Clone Sequence Records

BO09742.3prime Sequence

824 bp (823 high quality bases) assembled on 2006-01-28

> BO09742.3prime
ATGGTCTAGAAAGCTTGCATAGCGCGATGAAGTTCGACGTAGTTGCGGAG
AGCGTGAACGGCTGTAGCTCCTGTTGCGAGTGTAGCGGTTGCGACTAGGG
CTCCTGCGGAGATTACGGTCGTAGCGATCGTTGCGGTAATCATAGCGATC
ACGATAGTTGTCATAGGGCGAAGCGGAGCGATCGTGATACACACGGCGTC
CTCTACGCGGTGAAAATGAGCGTGGAGCTTTTCCACGCGGCTGACGACCC
AAATACACACCCGGAGTTGGGGTATGAGCCCGTTGGGTTATAGAGAAATC
GACGCGAATACGGCGACCATCCACTTCTATTCCGGAGCAGCTGTCCTTAG
CCGCGCGGGCATCGCTGAGTTTCTCAAAATAAATGAAACAAAAGCCCCGG
GAACGCTGTGTTTGTGCGTCAATCACCATCTGGATGCGTTCGATGGGTCC
GTACTTGTTGAACAGCTCGCGTACCTTGTGCTGCGAGGTATTTGTGTTCA
GTCCGAAGACTCCTATGCAGCGGCTTGCTTGTGGATGTTCGCGAGACTTG
TGCATTCGTTCCCGATCGCGTGATGAACGTCCGGAGCGATGACGCGGCTC
CGGTGGCGGCGACTCCGAGGAGGAACGCGAACGGGAGCGTCGGCGAGAGG
AGGACCGCTGGTGCCGGCGACTGCCACAGTAATCGTAGTCAGACCTGCGG
TCCTTGTGTCCGGATGAAGTTGTCCCCGCTGACGATGATGACGCCGATCG
CTTGTGTTTATATCTGGCGCTGCAATGGAGACGCCCGCTACTGAGTGGCT
CCCGATCCATGTCGACTGATAACT

BO09742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10128-PG 795 tra2-RG 1..792 810..19 3835 99.3 Minus
CG10128-PA 795 tra2-RA 1..792 810..19 3835 99.3 Minus
CG10128-PF 795 tra2-RF 1..792 810..19 3835 99.3 Minus
CG10128-PC 681 tra2-RC 3..678 694..19 3255 99.2 Minus
CG10128-PD 681 tra2-RD 3..678 694..19 3255 99.2 Minus
CG10128-PE 540 tra2-RE 1..537 555..19 2585 99.2 Minus
CG10128-PB 411 tra2-RB 1..400 810..411 1925 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..962 810..19 3885 99.4 Minus
tra2-RA 1376 CG10128-RA 166..957 810..19 3885 99.4 Minus
tra2-RG 1391 CG10128-RG 181..972 810..19 3885 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 37..415 1850 99.2 Plus
2R 25286936 2R 14603347..14603503 540..696 770 99.4 Plus
2R 25286936 2R 14603161..14603289 412..540 615 98.4 Plus
2R 25286936 2R 14603982..14604099 693..810 590 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:04:02 has no hits.

BO09742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:36 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PF 1..795 15..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:35 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PG 1..795 15..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:09 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 8..817 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:45 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 8..817 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:45 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14603161..14603289 412..540 98 <- Plus
2R 14603348..14603501 541..694 99 <- Plus
2R 14603984..14604104 695..817 97   Plus
2R 14602504..14602876 39..411 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:09 Download gff for BO09742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10490009..10490381 39..411 99 <- Plus
arm_2R 10490666..10490794 412..540 98 <- Plus
arm_2R 10490853..10491006 541..694 99 <- Plus
arm_2R 10491489..10491609 695..817 97   Plus

BO09742.5prime Sequence

824 bp (823 high quality bases) assembled on 2006-01-28

> BO09742.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATGCAAGCTTTCTAGACC

BO09742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10128-PG 795 tra2-RG 1..792 17..808 3835 99.3 Plus
CG10128-PA 795 tra2-RA 1..792 17..808 3835 99.3 Plus
CG10128-PF 795 tra2-RF 1..792 17..808 3835 99.3 Plus
CG10128-PC 681 tra2-RC 3..678 133..808 3255 99.2 Plus
CG10128-PD 681 tra2-RD 3..678 133..808 3255 99.2 Plus
CG10128-PE 540 tra2-RE 1..537 272..808 2585 99.2 Plus
CG10128-PB 411 tra2-RB 1..400 17..416 1925 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..962 17..808 3885 99.4 Plus
tra2-RA 1376 CG10128-RA 166..957 17..808 3885 99.4 Plus
tra2-RG 1391 CG10128-RG 181..972 17..808 3885 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 790..412 1850 99.2 Minus
2R 25286936 2R 14603347..14603503 287..131 770 99.4 Minus
2R 25286936 2R 14603161..14603289 415..287 615 98.4 Minus
2R 25286936 2R 14603982..14604099 134..17 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:06 has no hits.

BO09742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:37 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PF 1..795 17..812 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:36 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PG 1..795 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:18 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 10..819 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:46 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 10..819 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:46 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14602504..14602876 416..788 99 <- Minus
2R 14603161..14603289 287..415 98 <- Minus
2R 14603348..14603501 133..286 99 <- Minus
2R 14603984..14604104 10..132 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:18 Download gff for BO09742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10490009..10490381 416..788 99 <- Minus
arm_2R 10490666..10490794 287..415 98 <- Minus
arm_2R 10490853..10491006 133..286 99 <- Minus
arm_2R 10491489..10491609 10..132 97   Minus

BO09742.complete Sequence

826 bp (826 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631562

> BO09742.complete
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATGCAAGCTTTCTAGACCAT

BO09742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 795 CG10128-PF 1..792 17..808 3885 99.4 Plus
tra2-RA 795 CG10128-PA 1..792 17..808 3885 99.4 Plus
tra2-RG 795 CG10128-PG 1..792 17..808 3885 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..962 17..808 3885 99.4 Plus
tra2-RA 1376 CG10128-RA 166..957 17..808 3885 99.4 Plus
tra2-RG 1391 CG10128-RG 181..972 17..808 3885 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 790..412 1850 99.2 Minus
2R 25286936 2R 14603347..14603503 287..131 770 99.4 Minus
2R 25286936 2R 14603161..14603289 415..287 615 98.4 Minus
2R 25286936 2R 14603982..14604099 134..17 590 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:28:27 has no hits.

BO09742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:45 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RF 1..795 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:14 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RA 176..982 10..819 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:18 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 181..972 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:45 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RA 176..982 10..819 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:09 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 181..972 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:09 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14603348..14603501 133..286 99 <- Minus
2R 14603984..14604099 17..132 100   Minus
2R 14602504..14602876 416..788 99 <- Minus
2R 14603161..14603289 287..415 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:18 Download gff for BO09742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10490853..10491006 133..286 99 <- Minus
arm_2R 10491489..10491604 17..132 100   Minus
arm_2R 10490009..10490381 416..788 99 <- Minus
arm_2R 10490666..10490794 287..415 98 <- Minus

BO09742.pep Sequence

Translation from 16 to 826

> BO09742.pep
MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH
QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG
VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD
ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS
PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS
RSRSPQLRRTSSRYASFLDH

BO09742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-PF 264 CG10128-PF 1..264 1..264 1398 100 Plus
tra2-PA 264 CG10128-PA 1..264 1..264 1398 100 Plus
tra2-PG 264 CG10128-PG 1..264 1..264 1398 100 Plus
tra2-PD 226 CG10128-PD 2..226 40..264 1196 100 Plus
tra2-PC 226 CG10128-PC 2..226 40..264 1196 100 Plus