Clone Sequence Records
BO09742.3prime Sequence
824 bp (823 high quality bases) assembled on 2006-01-28
> BO09742.3prime
ATGGTCTAGAAAGCTTGCATAGCGCGATGAAGTTCGACGTAGTTGCGGAG
AGCGTGAACGGCTGTAGCTCCTGTTGCGAGTGTAGCGGTTGCGACTAGGG
CTCCTGCGGAGATTACGGTCGTAGCGATCGTTGCGGTAATCATAGCGATC
ACGATAGTTGTCATAGGGCGAAGCGGAGCGATCGTGATACACACGGCGTC
CTCTACGCGGTGAAAATGAGCGTGGAGCTTTTCCACGCGGCTGACGACCC
AAATACACACCCGGAGTTGGGGTATGAGCCCGTTGGGTTATAGAGAAATC
GACGCGAATACGGCGACCATCCACTTCTATTCCGGAGCAGCTGTCCTTAG
CCGCGCGGGCATCGCTGAGTTTCTCAAAATAAATGAAACAAAAGCCCCGG
GAACGCTGTGTTTGTGCGTCAATCACCATCTGGATGCGTTCGATGGGTCC
GTACTTGTTGAACAGCTCGCGTACCTTGTGCTGCGAGGTATTTGTGTTCA
GTCCGAAGACTCCTATGCAGCGGCTTGCTTGTGGATGTTCGCGAGACTTG
TGCATTCGTTCCCGATCGCGTGATGAACGTCCGGAGCGATGACGCGGCTC
CGGTGGCGGCGACTCCGAGGAGGAACGCGAACGGGAGCGTCGGCGAGAGG
AGGACCGCTGGTGCCGGCGACTGCCACAGTAATCGTAGTCAGACCTGCGG
TCCTTGTGTCCGGATGAAGTTGTCCCCGCTGACGATGATGACGCCGATCG
CTTGTGTTTATATCTGGCGCTGCAATGGAGACGCCCGCTACTGAGTGGCT
CCCGATCCATGTCGACTGATAACT
BO09742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10128-PG | 795 | tra2-RG | 1..792 | 810..19 | 3835 | 99.3 | Minus |
CG10128-PA | 795 | tra2-RA | 1..792 | 810..19 | 3835 | 99.3 | Minus |
CG10128-PF | 795 | tra2-RF | 1..792 | 810..19 | 3835 | 99.3 | Minus |
CG10128-PC | 681 | tra2-RC | 3..678 | 694..19 | 3255 | 99.2 | Minus |
CG10128-PD | 681 | tra2-RD | 3..678 | 694..19 | 3255 | 99.2 | Minus |
CG10128-PE | 540 | tra2-RE | 1..537 | 555..19 | 2585 | 99.2 | Minus |
CG10128-PB | 411 | tra2-RB | 1..400 | 810..411 | 1925 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..962 | 810..19 | 3885 | 99.4 | Minus |
tra2-RA | 1376 | CG10128-RA | 166..957 | 810..19 | 3885 | 99.4 | Minus |
tra2-RG | 1391 | CG10128-RG | 181..972 | 810..19 | 3885 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 37..415 | 1850 | 99.2 | Plus |
2R | 25286936 | 2R | 14603347..14603503 | 540..696 | 770 | 99.4 | Plus |
2R | 25286936 | 2R | 14603161..14603289 | 412..540 | 615 | 98.4 | Plus |
2R | 25286936 | 2R | 14603982..14604099 | 693..810 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:04:02 has no hits.
BO09742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:36 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PF | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:35 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PG | 1..795 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:09 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 8..817 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:45 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 8..817 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:45 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14603161..14603289 | 412..540 | 98 | <- | Plus |
2R | 14603348..14603501 | 541..694 | 99 | <- | Plus |
2R | 14603984..14604104 | 695..817 | 97 | | Plus |
2R | 14602504..14602876 | 39..411 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:09 Download gff for
BO09742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10490009..10490381 | 39..411 | 99 | <- | Plus |
arm_2R | 10490666..10490794 | 412..540 | 98 | <- | Plus |
arm_2R | 10490853..10491006 | 541..694 | 99 | <- | Plus |
arm_2R | 10491489..10491609 | 695..817 | 97 | | Plus |
BO09742.5prime Sequence
824 bp (823 high quality bases) assembled on 2006-01-28
> BO09742.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATGCAAGCTTTCTAGACC
BO09742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10128-PG | 795 | tra2-RG | 1..792 | 17..808 | 3835 | 99.3 | Plus |
CG10128-PA | 795 | tra2-RA | 1..792 | 17..808 | 3835 | 99.3 | Plus |
CG10128-PF | 795 | tra2-RF | 1..792 | 17..808 | 3835 | 99.3 | Plus |
CG10128-PC | 681 | tra2-RC | 3..678 | 133..808 | 3255 | 99.2 | Plus |
CG10128-PD | 681 | tra2-RD | 3..678 | 133..808 | 3255 | 99.2 | Plus |
CG10128-PE | 540 | tra2-RE | 1..537 | 272..808 | 2585 | 99.2 | Plus |
CG10128-PB | 411 | tra2-RB | 1..400 | 17..416 | 1925 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..962 | 17..808 | 3885 | 99.4 | Plus |
tra2-RA | 1376 | CG10128-RA | 166..957 | 17..808 | 3885 | 99.4 | Plus |
tra2-RG | 1391 | CG10128-RG | 181..972 | 17..808 | 3885 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 790..412 | 1850 | 99.2 | Minus |
2R | 25286936 | 2R | 14603347..14603503 | 287..131 | 770 | 99.4 | Minus |
2R | 25286936 | 2R | 14603161..14603289 | 415..287 | 615 | 98.4 | Minus |
2R | 25286936 | 2R | 14603982..14604099 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:19:06 has no hits.
BO09742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:37 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PF | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:36 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PG | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:18 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 10..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:46 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 10..819 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:46 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14602504..14602876 | 416..788 | 99 | <- | Minus |
2R | 14603161..14603289 | 287..415 | 98 | <- | Minus |
2R | 14603348..14603501 | 133..286 | 99 | <- | Minus |
2R | 14603984..14604104 | 10..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:18 Download gff for
BO09742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10490009..10490381 | 416..788 | 99 | <- | Minus |
arm_2R | 10490666..10490794 | 287..415 | 98 | <- | Minus |
arm_2R | 10490853..10491006 | 133..286 | 99 | <- | Minus |
arm_2R | 10491489..10491609 | 10..132 | 97 | | Minus |
BO09742.complete Sequence
826 bp (826 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631562
> BO09742.complete
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATGCAAGCTTTCTAGACCAT
BO09742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 795 | CG10128-PF | 1..792 | 17..808 | 3885 | 99.4 | Plus |
tra2-RA | 795 | CG10128-PA | 1..792 | 17..808 | 3885 | 99.4 | Plus |
tra2-RG | 795 | CG10128-PG | 1..792 | 17..808 | 3885 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..962 | 17..808 | 3885 | 99.4 | Plus |
tra2-RA | 1376 | CG10128-RA | 166..957 | 17..808 | 3885 | 99.4 | Plus |
tra2-RG | 1391 | CG10128-RG | 181..972 | 17..808 | 3885 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 790..412 | 1850 | 99.2 | Minus |
2R | 25286936 | 2R | 14603347..14603503 | 287..131 | 770 | 99.4 | Minus |
2R | 25286936 | 2R | 14603161..14603289 | 415..287 | 615 | 98.4 | Minus |
2R | 25286936 | 2R | 14603982..14604099 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:27 has no hits.
BO09742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:45 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RF | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:14 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RA | 176..982 | 10..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:18 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 181..972 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:45 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RA | 176..982 | 10..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:09 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 181..972 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:09 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14603348..14603501 | 133..286 | 99 | <- | Minus |
2R | 14603984..14604099 | 17..132 | 100 | | Minus |
2R | 14602504..14602876 | 416..788 | 99 | <- | Minus |
2R | 14603161..14603289 | 287..415 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:18 Download gff for
BO09742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10490853..10491006 | 133..286 | 99 | <- | Minus |
arm_2R | 10491489..10491604 | 17..132 | 100 | | Minus |
arm_2R | 10490009..10490381 | 416..788 | 99 | <- | Minus |
arm_2R | 10490666..10490794 | 287..415 | 98 | <- | Minus |
BO09742.pep Sequence
Translation from 16 to 826
> BO09742.pep
MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH
QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG
VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD
ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS
PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS
RSRSPQLRRTSSRYASFLDH
BO09742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-PF | 264 | CG10128-PF | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PA | 264 | CG10128-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PG | 264 | CG10128-PG | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PD | 226 | CG10128-PD | 2..226 | 40..264 | 1196 | 100 | Plus |
tra2-PC | 226 | CG10128-PC | 2..226 | 40..264 | 1196 | 100 | Plus |