Clone Sequence Records
BO09743.3prime Sequence
964 bp (824 high quality bases) assembled on 2006-01-28
> BO09743.3prime
ATGGTCTAGAAAGCTTGCGTAGTAACCACTAGGATGGTTATCCTCAGTTA
ACCCCGTGGGCCACTCGGTGTAGGCATTAAAGGCGGGTTGGTGCGAGTAT
ATTCCCTGGATATGGTGCCGCAGATCGTTGGGCCCTACGTAATAGAGTGA
ACGCGTGGTGGACAAGCGGTGGCGCACGTCGTACGGCTCCAGCACCGGAA
AAGGCTGCCCGAAGAATCCGGTAACGTTGCCGGCATGCGCACTGTACTCC
GTATGGGTGTAGTTCGTCTGCCTGTAGAAAATTTGAGGAACAGTTGGGGT
AGGAAGCAGGTACTGGATCATCTCCTTTGGATGACTAGTTCGATTATCGT
GAAGTGTAACTATCGGAGAAATGGGGCGTGGCGATATTGCGGCCAAAGGT
GGCGAGGTGGTATTCCGCTGTTGGGTGTGTGCGGGCTGGGAGCTACTCTT
TGAAACTCTGCGAAGGCGAGTATGGGGGCTGTTGGATCGGCTTCTGGAAC
GTCGGCAAGCCACGGTCTTTAGTGGCCTGTGTTTACTCTTTGATCGCGCC
TTGGATGCGCGTCTTGAAAGCTCCTGCTGTGTGATTCTTACAGATTTGGA
TTTGCTTCTAGAACACTTTCGGAGGGGTTTTCTTGCTGACCGGCACCTGC
TCCTCGAACGATCCCCCCTGTAAGCCCTACTTTCTATGCGATGTGCTACC
CCATGTTTGATAAGCCTAGAGTTGCTCCTTGACCGATACCGAGAACGGCG
TACTGGCGAATTCCGCGACCCAAGCCTCCGTTCAACGCTTGGAGATCTGA
GGGATCTGTGACGGTTCCCAGCACAGGGCGACGCATGTCTTGACCCTTTG
CCTAGAGAACGATATCGCGAACGACTTCTGTGATCTGGGCTCCGGGACCT
CGAGATAAGTTTGCGCCTAGATGGTAGTCTGCTACGCCGCTCTCTTCGGT
CCCTAAAGTAGCAT
BO09743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-PA | 1725 | CG32452-RA | 777..1722 | 964..19 | 4705 | 99.8 | Minus |
| CG32452-PB | 1725 | CG32452-RB | 777..1722 | 964..19 | 4705 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-RC | 2130 | CG32452-RC | 941..1886 | 964..19 | 4715 | 99.9 | Minus |
| CG32452-RB | 1932 | CG32452-RB | 941..1886 | 964..19 | 4715 | 99.9 | Minus |
| CG32452-RA | 2018 | CG32452-RA | 1027..1972 | 964..19 | 4715 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22718754..22719699 | 964..19 | 4715 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:21:06 has no hits.
BO09743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:38 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-PB | 777..1725 | 16..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:38 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-PB | 777..1725 | 16..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:38:21 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 1027..1986 | 7..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:53:04 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 1027..1986 | 7..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:53:04 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22718754..22719713 | 7..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:38:21 Download gff for
BO09743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22711854..22712813 | 7..964 | 99 | | Minus |
BO09743.5prime Sequence
945 bp (808 high quality bases) assembled on 2006-01-28
> BO09743.5prime
GAAGTTATCAGTCGACATGAGCCACAAGGGCAGCACGCACATAGCCCACA
GACGGGATATCGGAGACACCACGAAAGCACATGTGCAGGATGGAGAAGTA
CTTAGCTCGGAAACCAATGAACACGATGGATTTCCACAGGAAGCTTATAT
TAAAACCGAGCCCTTATGCGAAGATCTGTCGGAAGTCCTGGACGAGCTGG
GGGAAATACTGGACGAGGAGCTGGCCGATATGTTGGATATGAGGCAGAGC
AACATTATATATAGGGACCAGGGCGAGATTATGGATAAGGAGGAGGCCGA
GGTGGATGAGGAAGAAGCGGGCACGCCACCGGCGCCCTCCATCTCACTTA
CCGACGACGCCTCTTTATTCACCAGGAGATCAAGACCATATGCTGACGAT
TCTCCCCTAAGCTTTAGTGGATCTTTATACGAGCCGGGAGGCTCAAGTGG
GGAAGACCAGAAAGAACCAGTTCGTGGCAATAATTTACATGAAATTGCCT
TAGTGCGGTTCCGAAACTGTCCAGAACAGAGCTTAAAACGCTGCAGTATC
GACGCTTTCGTCGAACGAAAGTTCCCCTCGGAGAATAAGATAAATCGAAG
AAGCACCCGCAGCACATCCAATGAAAAGAGTGCCACACAAAGACGATCGG
TTAGTCGCAGTCACATCCCAAGGTGCAGAGGCAGAAGAAGGAGCCAGTCC
AGGAGCCCAACAGAACCAAAGCAAAGATCGAGTCCGCCCACCCACAAAAG
GCGATCAAGTCCATCTAGAGAACACATTAGGTCTCGGAAGCGATGCTACT
CTAGGGACCGAAGAGAGCGGCGTAGCAGACTACCATCTAGGCGCAAACTT
ATCTCGAGGTCCCGGAGCCCAGATCACAGAAGTCGTTCGCGATATCGTTC
TCTAGGGCAAGGGTCAAGACATGCGTCGCCCTGTGCTGGGAACCG
BO09743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-PA | 1725 | CG32452-RA | 1..929 | 17..945 | 4545 | 99.5 | Plus |
| CG32452-PB | 1725 | CG32452-RB | 1..929 | 17..945 | 4545 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-RC | 2130 | CG32452-RC | 164..1093 | 16..945 | 4590 | 99.6 | Plus |
| CG32452-RB | 1932 | CG32452-RB | 164..1093 | 16..945 | 4590 | 99.6 | Plus |
| CG32452-RA | 2018 | CG32452-RA | 250..1179 | 16..945 | 4590 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22717977..22718906 | 16..945 | 4590 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:36:40 has no hits.
BO09743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:39 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-PB | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:39 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-PB | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:19:38 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 243..1179 | 6..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:02 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 243..1179 | 6..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:02 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22717970..22718906 | 6..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:19:38 Download gff for
BO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22711070..22712006 | 6..945 | 99 | | Plus |
BO09743.complete Sequence
1756 bp (1756 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631563
> BO09743.complete
GAAGTTATCAGTCGACATGAGCCACAAGGGCAGCACGCACATAGCCCACA
GACGGGATATCGGAGACACCACGAAAGCACATGTGCAGGATGGAGAAGTA
CTTAGCTCGGAAACCAATGAACACGATGGATTTCCACAGGAAGCTTATAT
TAAAACCGAGCCCTTATGCGAAGATCTGTCGGAAGTCCTGGACGAGCTGG
GGGAAATACTGGACGAGGAGCTGGCCGATATGTTGGATATGAGGCAGAGC
AACATTATATATAGGGACCAGGGCGAGATTATGGATAAGGAGGAGGCCGA
GGTGGATGAGGAAGAAGCGGGCACGCCACCGGCGCCCTCCATCTCACTTA
CCGACGACGCCTCTTTATTCACCAGGAGATCAAGACCATATGCTGACGAT
TCTCCCCTAAGCTTTAGTGGATCTTTATACGAGCCGGGAGGCTCAAGTGG
GGAAGACCAGAAAGAACCAGTTCGTGGCAATAATTTACATGAAATTGCCT
TAGTGCGGTTCCGAAACTGTCCAGAACAGAGCTTAAAACGCTGCAGTATC
GACGCTTTCGTCGAACGAAAGTTCCCCTCGGAGAATAAGATAAATCGAAG
AAGCACCCGCAGCACATCCAATGAAAAGAGTGCCACACAAAGACGATCGG
TTAGTCGCAGTCACATCCCAAGGTGCAGAGGCAGAAGAAGGAGCCAGTCC
AGGAGCCCAACAGAACCAAAGCAAAGATCGAGTCCGCCCACCCACAAAAG
GCGATCAAGTCCATCTAGAGAACACATTAGGTCTCGGAAGCGATGCTACT
CTAGGGACCGAAGAGAGCGGCGTAGCAGACTACCATCTAGGCGCAAACTT
ATCTCGAGGTCCCGGAGCCCAGATCACAGAAGTCGTTCGCGATATCGTTC
TCTAGGCAAAGGGTCAAGACATGCGTCGCCCTGTGCTGGGAACCGTCACA
GATCCCTCAGATCTCCAAGCGTTGAACGGAGGCTTGGGTCGCGGAATTCG
CCAGTACGCCGTTCTCGGTATCGGTCAAGGAGCAACTCTAGGCTTATCAA
ACATGGGGTAGCACATCGCATAGAAAGTAGGGCTTACAGGGGGGATCGTT
CGAGGAGCAGGTGCCGGTCAGCAAGAAAACCCCTCCGAAAGTGTTCTAGA
AGCAAATCCAAATCTGTAAGAATCACACAGCAGGAGCTTTCAAGACGCGC
ATCCAAGGCGCGATCAAAGAGTAAACACAGGCCACTAAAGACCGTGGCTT
GCCGACGTTCCAGAAGCCGATCCAACAGCCCCCATACTCGCCTTCGCAGA
GTTTCAAAGAGTAGCTCCCAGCCCGCACACACCCAACAGCGGAATACCAC
CTCGCCACCTTTGGCCGCAATATCGCCACGCCCCATTTCTCCGATAGTTA
CACTTCACGATAATCGAACTAGTCATCCAAAGGAGATGATCCAGTACCTG
CTTCCTACCCCAACTGTTCCTCAAATTTTCTACAGGCAGACGAACTACAC
CCATACGGAGTACAGTGCGCATGCCGGCAACGTTACCGGATTCTTCGGGC
AGCCTTTTCCGGTGCTGGAGCCGTACGACGTGCGCCACCGCTTGTCCACC
ACGCGTTCACTCTATTACGTAGGGCCCAACGATCTGCGGCACCATATCCA
GGGAATATACTCGCACCAACCCGCCTTTAATGCCTACACCGAGTGGCCCA
CGGGGTTAACTGAGGATAACCATCCTAGTGGTTACTACGCAAGCTTTCTA
GACCAT
BO09743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-RC | 1725 | CG32452-PC | 1..1722 | 17..1738 | 8580 | 99.9 | Plus |
| CG32452-RB | 1725 | CG32452-PB | 1..1722 | 17..1738 | 8580 | 99.9 | Plus |
| CG32452-RA | 1725 | CG32452-PA | 1..1722 | 17..1738 | 8580 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-RC | 2130 | CG32452-RC | 164..1886 | 16..1738 | 8585 | 99.9 | Plus |
| CG32452-RB | 1932 | CG32452-RB | 164..1886 | 16..1738 | 8585 | 99.9 | Plus |
| CG32452-RA | 2018 | CG32452-RA | 250..1972 | 16..1738 | 8585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22717977..22719699 | 16..1738 | 8585 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:29 has no hits.
BO09743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:38 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RB | 1..1725 | 17..1741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:44 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RB | 149..1889 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:18 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 251..1972 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:38 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RB | 149..1889 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:04 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32452-RA | 251..1972 | 17..1740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:04 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22717978..22719699 | 17..1740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:18 Download gff for
BO09743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22711078..22712799 | 17..1740 | 99 | | Plus |
BO09743.pep Sequence
Translation from 16 to 1756
> BO09743.pep
MSHKGSTHIAHRRDIGDTTKAHVQDGEVLSSETNEHDGFPQEAYIKTEPL
CEDLSEVLDELGEILDEELADMLDMRQSNIIYRDQGEIMDKEEAEVDEEE
AGTPPAPSISLTDDASLFTRRSRPYADDSPLSFSGSLYEPGGSSGEDQKE
PVRGNNLHEIALVRFRNCPEQSLKRCSIDAFVERKFPSENKINRRSTRST
SNEKSATQRRSVSRSHIPRCRGRRRSQSRSPTEPKQRSSPPTHKRRSSPS
REHIRSRKRCYSRDRRERRSRLPSRRKLISRSRSPDHRSRSRYRSLGKGS
RHASPCAGNRHRSLRSPSVERRLGSRNSPVRRSRYRSRSNSRLIKHGVAH
RIESRAYRGDRSRSRCRSARKPLRKCSRSKSKSVRITQQELSRRASKARS
KSKHRPLKTVACRRSRSRSNSPHTRLRRVSKSSSQPAHTQQRNTTSPPLA
AISPRPISPIVTLHDNRTSHPKEMIQYLLPTPTVPQIFYRQTNYTHTEYS
AHAGNVTGFFGQPFPVLEPYDVRHRLSTTRSLYYVGPNDLRHHIQGIYSH
QPAFNAYTEWPTGLTEDNHPSGYYASFLDH
BO09743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32452-PC | 574 | CG32452-PC | 1..574 | 1..574 | 3004 | 100 | Plus |
| CG32452-PB | 574 | CG32452-PB | 1..574 | 1..574 | 3004 | 100 | Plus |
| CG32452-PA | 574 | CG32452-PA | 1..574 | 1..574 | 3004 | 100 | Plus |
| Srp54-PA | 513 | CG4602-PA | 284..500 | 219..446 | 197 | 37 | Plus |
| CG9915-PC | 820 | CG9915-PC | 166..434 | 193..443 | 187 | 34.9 | Plus |
| Srp54-PA | 513 | CG4602-PA | 284..459 | 265..455 | 158 | 35.8 | Plus |
