Clone Sequence Records
BO09746.3prime Sequence
825 bp (824 high quality bases) assembled on 2006-01-28
> BO09746.3prime
ATGGTCTAGAAAGCTTGCATTCAAGCGCTGAGTTACCGGCAGCTTTTTGC
GCCGTCTTCGCAATTGCTGACTGCGATCCCAGTACTCATAGTAGCGTTCC
TGTTTCAACCATTCCTGATATTTATACCACCACTCCTCCCACTTGATATA
GTCCTTCAGGTCCAAGTCTCTTAGGTAACCACGACTCTTGTAGTACTCGT
AACGGACGCGCACATCGTCCCACGACAGCATTCCCGACGGTGCTGTGGTG
GCTAACTCCTCCGGAAAGTGCCCGGCCGGTGCCGGCGAATACGAATAGCG
ACGCGGCGGTGACTCCAGGCCCTCCTCAATCATTACTTTGAGGGCCCCAC
CGGCGGAGTCTTTGGTGATGCGCATGTTCTCCATGTTGCTGCGATCGATG
CTCCACTGCGCCATTTTGCCGAATCGATCCGAGAGCGTCAGCCGCGTAGT
AGCCGAGAATGTGGGCAACGTGCCGACCTCGTCGCTGTCCGAGCCGTTCG
AATCGTCCGAGTCCGAGGAGGAGTTTGCCGCGTTAGCTCCGGTGCCACTG
GACGTCCCGCTCGGATGTTTTTTGCGTTTCTCACCTTCAATTTTAATGCG
TGGCCTCACCTCCTTTTCCTTCTTCTTCTTTTTTGCCTGTGTTGTAGGTG
CTGCAGCTGGCGCTGACGCCGGCTCTGGTGGCTCTGGCGGGCGGTGCTTA
AGACGCGGATCTTCCGGCGGAGGCGAATGGCGCGAAGACCGCGCGATCTT
CATGTGGGTGTCCGACGAGGCGACACGTTCATGCCCGATGTGACGCATCT
TCGCCTGGCGATACTTCTCCATGGC
BO09746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-PB | 1824 | CG8929-RB | 1015..1821 | 825..19 | 3985 | 99.7 | Minus |
| CG8929-PA | 1824 | CG8929-RA | 1015..1821 | 825..19 | 3985 | 99.7 | Minus |
| CG8929-PC | 1704 | CG8929-RC | 895..1701 | 825..19 | 3985 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-RD | 2102 | CG8929-RD | 934..1740 | 825..19 | 4005 | 99.8 | Minus |
| CG8929-RC | 2231 | CG8929-RC | 1063..1869 | 825..19 | 4005 | 99.8 | Minus |
| CG8929-RA | 2972 | CG8929-RA | 1804..2610 | 825..19 | 4005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20329707..20330165 | 611..153 | 2280 | 99.8 | Minus |
| 2R | 25286936 | 2R | 20329415..20329632 | 825..608 | 1075 | 99.5 | Minus |
| 2R | 25286936 | 2R | 20330223..20330359 | 155..19 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:52 has no hits.
BO09746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:45 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-PC | 895..1704 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:46 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-PC | 895..1704 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:21 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 1331..2137 | 19..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:26 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RA | 1804..2610 | 19..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:26 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20329415..20329630 | 610..825 | 99 | -> | Minus |
| 2R | 20329709..20330164 | 154..609 | 99 | -> | Minus |
| 2R | 20330225..20330359 | 19..153 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:21 Download gff for
BO09746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16216920..16217135 | 610..825 | 99 | -> | Minus |
| arm_2R | 16217214..16217669 | 154..609 | 99 | -> | Minus |
| arm_2R | 16217730..16217864 | 19..153 | 100 | | Minus |
BO09746.5prime Sequence
935 bp (852 high quality bases) assembled on 2006-01-28
> BO09746.5prime
GAAGTTATCAGTCGACATGGCGTCGCGCAGGCGCGCCGAACTGAATCCAA
AACTGCACATGGACAGGCAGCCGACAGCTGCCCGCATAACAGATCCCTCA
TTACCCGCTGGAAAGCGACGCGAGATCGACAACGTGATGAAGAAGGCGCG
CGCCAACACCACCAACGATTATTGGGACAAGAAGCTGATCGAGGCCGAGG
AGAAGGATCCAAACCGATGGCGCCACACGGGCTACAAGAAGATGTACATC
CAGGGGGAGAGCAGCTCTGGAGAGAGCGAACGCGACGGTCGCGAAGGTCG
TGAGGGTGGAGCACCGCCCTACGGTCGTTATCCGCCCACAGGTGGACCGC
CGCCAGGTCCACCGCCTCCGTCGCAGCGTTACGGACGCTCTCGTTCGCCG
CACTCGCGCAGTCGGTCGCGTTTGCGCAAATCGCCACCGCTTTCACCACC
TCCGCGTCGTCGTTCACCGCCCATGGCTATGCACAGTGGCATGGATCGCC
GTGGTGGACCTCGCTCGCCGCCAATGCCACGATCGCCCAACAATAGCCAC
GATGCCCTCATGCGTCGACCCGGAAACGGCCACGGCGGAAGGCCCCGATC
ACCGCCGGAACCCAGTGGTGGCTCGTCGTCCTCGTCGTTGCGACGCAAGC
CAAACGCGTCGCGTTCTCCGCTCGGACGTCGCCGGTCTCCACCGCTTCCT
CCGCCCTCGTCGTCGGCAATGGAGAAGCGAGGTCCAGTCGCCCATATCCT
GCCGCGCTCCAAGCGACCGCCATCGCCACCACCGAGGCACTCGATGCGTT
CGCGATCAACAGCTCTATGAGCACCAGCTCCGATGATTCCTGCTCCCTCT
GCTCACCCAGTCATCGTCACAGATCTCGATCCCGCGGTCCGCGCTCGCCG
CCACCAAGCCACGTGGCATTATCGTTCGGGGGGCG
BO09746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-PB | 1824 | CG8929-RB | 1..793 | 17..809 | 3915 | 99.7 | Plus |
| CG8929-PA | 1824 | CG8929-RA | 1..793 | 17..809 | 3915 | 99.7 | Plus |
| CG8929-PC | 1704 | CG8929-RC | 1..673 | 137..809 | 3315 | 99.7 | Plus |
| CG8929-PB | 1824 | CG8929-RB | 793..890 | 808..905 | 490 | 100 | Plus |
| CG8929-PA | 1824 | CG8929-RA | 793..890 | 808..905 | 490 | 100 | Plus |
| CG8929-PC | 1704 | CG8929-RC | 673..770 | 808..905 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-RA | 2972 | CG8929-RA | 790..1708 | 17..932 | 4490 | 99.5 | Plus |
| CG8929-RB | 2499 | CG8929-RB | 317..1235 | 17..932 | 4490 | 99.5 | Plus |
| CG8929-RC | 2231 | CG8929-RC | 125..967 | 93..932 | 4110 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20328324..20329021 | 90..787 | 3460 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20329105..20329197 | 787..878 | 415 | 98.9 | Plus |
| 2R | 25286936 | 2R | 20328059..20328134 | 17..92 | 380 | 100 | Plus |
| 2R | 25286936 | 2R | 20329263..20329319 | 878..932 | 185 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:57:55 has no hits.
BO09746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:46 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-PA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:47 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-PA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:52 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 309..1237 | 7..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:55:35 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 309..1237 | 7..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:55:35 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20328051..20328134 | 7..92 | 95 | -> | Plus |
| 2R | 20328327..20329021 | 93..787 | 99 | -> | Plus |
| 2R | 20329106..20329197 | 788..878 | 98 | -> | Plus |
| 2R | 20329264..20329321 | 879..935 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:52 Download gff for
BO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16215556..16215639 | 7..92 | 95 | -> | Plus |
| arm_2R | 16215832..16216526 | 93..787 | 99 | -> | Plus |
| arm_2R | 16216611..16216702 | 788..878 | 98 | -> | Plus |
| arm_2R | 16216769..16216826 | 879..935 | 94 | | Plus |
BO09746.complete Sequence
1855 bp assembled on 2008-08-14
GenBank Submission: KX795966
> BO09746.complete
GAAGTTATCAGTCGACATGGCGTCGCGCAGGCGCGCCGAACTGAATCCAA
AACTGCACATGGACAGGCAGCCGACAGCTGCCCGCATAACAGATCCCTCA
TTACCCGCTGGAAAGCGACGCGAGATCGACAACGTGATGAAGAAGGCGCG
CGCCAACACCACCAACGATTATTGGGACAAGAAGCTGATCGAGGCCGAGG
AGAAGGATCCAAACCGATGGCGCCACACGGGCTACAAGAAGATGTACATC
CAGGGGGAGAGCAGCTCTGGAGAGAGCGAACGCGACGGTCGCGAAGGTCG
TGAGGGTGGAGCACCGCCCTACGGTCGTTATCCGCCCACAGGTGGACCGC
CGCCAGGTCCACCGCCTCCGTCGCAGCGTTACGGACGCTCTCGTTCGCCG
CACTCGCGCAGTCGGTCGCGTTTGCGCAAATCGCCACCGCTTTCACCACC
TCCGCGTCGTCGTTCACCGCCCATGGCTATGCACAGTGGCATGGATCGCC
GTGGTGGACCTCGCTCGCCGCCAATGCCACGATCGCCCAACAATAGCCAC
GATGCCCTCATGCGTCGACCCGGAAACGGCCACGGCGGAAGGCCCCGATC
ACCGCCGGAACCCAGTGGTGGCTCGTCGTCCTCGTCGTTGCGACGCAAGC
CAAACGCGTCGCGTTCTCCGCTCGGACGTCGCCGGTCTCCACCGCTTCCT
CCGCCCTCGTCGTCGGCAATGGAGAAGCGAGGTCCAGTCGCCCATATCCT
GCCGCGCTCCAAGCGACCGCCATCGCCACCACCGAGGCACTCGATGCGTT
CGCGATCAAACAGCTCTATGAGCACCAGCTCCGATGATTCCTGCTCCCTC
TGCTCACCCAGTCATCGTCACAGATCTCGATCCCGCGGTCCGCGCTCGCC
GCCACCCAAGCCACGTGGCCATTATCGTTCGGGGGCGCCTCCGCCCCCTC
CGTCGGAGTCACATGGCCGTATCCATGGTCGCCCCACCACTCCACCGCCC
GTGCGCGGAGGTGGAGGCAGTTCGGTTTCCGCCATGGAGAAGTATCGCCA
GGCGAAGATGCGTCACATCGGGCATGAACGTGTCGCCTCGTCGGACACCC
ACATGAAGATCGCGCGGTCTTCGCGCCATTCGCCTCCGCCGGAAGATCCG
CGTCTTAAGCACCGCCCGCCAGAGCCACCAGAGCCGGCGTCAGCGCCAGC
TGCAGCACCTACAACACAGGCAAAAAAGAAGAAGAAGGAAAAGGAGGTGA
GGCCACGCATTAAAATTGAAGGTGAGAAACGCAAAAAACATCCGAGCGGG
ACGTCCAGTGGCACCGGAGCTAACGCGGCAAACTCCTCCTCGGACTCGGA
CGATTCGAACGGCTCGGACAGCGACGAGGTCGGCACGTTGCCCACATTCT
CGGCTACTACGCGGCTGACGCTCTCGGATCGATTCGGCAAAATGGCGCAG
TGGAGCATCGATCGCAGCAACATGGAGAACATGCGCATCACCAAAGACTC
CGCCGGTGGGGCCCTCAAAGTAATGATTGAGGAGGGCCTGGAGTCACCGC
CGCGTCGCTATTCGTATTCGCCGGCACCGGCCGGGCACTTTCCGGAGGAG
TTAGCCACCACAGCACCGTCGGGAATGCTGTCGTGGGACGATGTGCGCGT
CCGTTACGAGTACTACAAGAGTCGTGGTTACCTAAGAGACTTGGACCTGA
AGGACTATATCAAGTGGGAGGAGTGGTGGTATAAATATCAGGAATGGTTG
AAACAGGAACGCTACTATGAGTACTGGGATCGCAGTCAGCAATTGCGAAG
ACGGCGCAAAAAGCTGCCGGTAACTCAGCGCTTGAATGCAAGCTTTCTAG
ACCAT
BO09746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-RA | 1824 | CG8929-PA | 1..1821 | 17..1837 | 9030 | 99.7 | Plus |
| CG8929-RB | 1824 | CG8929-PB | 1..1821 | 17..1837 | 9030 | 99.7 | Plus |
| CG8929-RD | 1704 | CG8929-PD | 1..1701 | 137..1837 | 8430 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-RA | 2972 | CG8929-RA | 790..2610 | 17..1837 | 9030 | 99.7 | Plus |
| CG8929-RB | 2499 | CG8929-RB | 317..2137 | 17..1837 | 9030 | 99.7 | Plus |
| CG8929-RC | 2231 | CG8929-RC | 125..1869 | 93..1837 | 8650 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20328324..20329021 | 90..787 | 3460 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20329707..20330165 | 1245..1703 | 2280 | 99.8 | Plus |
| 2R | 25286936 | 2R | 20329263..20329632 | 879..1248 | 1820 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20330223..20330359 | 1701..1837 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 20329105..20329197 | 787..879 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 20328059..20328134 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:01:40 has no hits.
BO09746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:05 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RA | 785..2613 | 7..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:16 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 317..2137 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:29 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RA | 793..2613 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:01 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8929-RB | 317..2137 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:01 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20328059..20328134 | 17..92 | 100 | -> | Plus |
| 2R | 20328327..20329021 | 93..787 | 99 | -> | Plus |
| 2R | 20329106..20329197 | 788..879 | 100 | -> | Plus |
| 2R | 20329264..20329630 | 880..1246 | 99 | -> | Plus |
| 2R | 20329709..20330164 | 1247..1702 | 99 | -> | Plus |
| 2R | 20330225..20330359 | 1703..1839 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:16 Download gff for
BO09746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16216769..16217135 | 880..1246 | 99 | -> | Plus |
| arm_2R | 16215564..16215639 | 17..92 | 100 | -> | Plus |
| arm_2R | 16215832..16216526 | 93..787 | 99 | -> | Plus |
| arm_2R | 16216611..16216702 | 788..879 | 100 | -> | Plus |
| arm_2R | 16217214..16217669 | 1247..1702 | 99 | -> | Plus |
| arm_2R | 16217730..16217864 | 1703..1839 | 98 | | Plus |
BO09746.pep Sequence
Translation from 16 to 1855
> BO09746.pep
MASRRRAELNPKLHMDRQPTAARITDPSLPAGKRREIDNVMKKARANTTN
DYWDKKLIEAEEKDPNRWRHTGYKKMYIQGESSSGESERDGREGREGGAP
PYGRYPPTGGPPPGPPPPSQRYGRSRSPHSRSRSRLRKSPPLSPPPRRRS
PPMAMHSGMDRRGGPRSPPMPRSPNNSHDALMRRPGNGHGGRPRSPPEPS
GGSSSSSLRRKPNASRSPLGRRRSPPLPPPSSSAMEKRGPVAHILPRSKR
PPSPPPRHSMRSRSNSSMSTSSDDSCSLCSPSHRHRSRSRGPRSPPPKPR
GHYRSGAPPPPPSESHGRIHGRPTTPPPVRGGGGSSVSAMEKYRQAKMRH
IGHERVASSDTHMKIARSSRHSPPPEDPRLKHRPPEPPEPASAPAAAPTT
QAKKKKKEKEVRPRIKIEGEKRKKHPSGTSSGTGANAANSSSDSDDSNGS
DSDEVGTLPTFSATTRLTLSDRFGKMAQWSIDRSNMENMRITKDSAGGAL
KVMIEEGLESPPRRYSYSPAPAGHFPEELATTAPSGMLSWDDVRVRYEYY
KSRGYLRDLDLKDYIKWEEWWYKYQEWLKQERYYEYWDRSQQLRRRRKKL
PVTQRLNASFLDH
BO09746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8929-PA | 607 | CG8929-PA | 1..607 | 1..607 | 3287 | 100 | Plus |
| CG8929-PB | 607 | CG8929-PB | 1..607 | 1..607 | 3287 | 100 | Plus |
| CG8929-PD | 567 | CG8929-PD | 1..567 | 41..607 | 3083 | 100 | Plus |
| CG8929-PC | 567 | CG8929-PC | 1..567 | 41..607 | 3083 | 100 | Plus |
| CG15021-PA | 420 | CG15021-PA | 65..334 | 99..402 | 216 | 26.5 | Plus |
