Clone Sequence Records
BO09747.3prime Sequence
927 bp (921 high quality bases) assembled on 2006-01-28
> BO09747.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCGGCTGCGCGTCGGGCAGATCCAGTA
TCCTGGCCACGAACTCCGAGATGTCCGTGTTGCGCTGCAGGTGCTCCACG
ATGAAGCTGTGCTTGAGCAGCTGCTCGTAGTTGGGCCTTGCCATATACTC
CTTCTGCAGGCAGACGGCGATGAAGTCCTCGAATTCCGGCGAAAATGTTC
CCTCCGGCAGGCGCGGCGGACTGTCCTCAACCACCTGACGCAGTTGCTCA
AATGGCGTTCGCCAATTGTCGTATGGGTAGCGGCCCGTGGCCATTTCGAT
CATGCCGATGCCCAGCGACCAAACATCCGACCTGATGTCGTATTGCGCCG
GATTTCCTTGGGGATCGATCCGTTCCGGCGCCATGTACGGCTTGCAACCG
GCATCAATGGTTTTGGCAATGGAGTCGACGAGGTAGCCTGAGATGCCAAA
GTCACAGATCTTGACCTGGCCGGCCCGATTGATCAGTATGTTCGAGGGCT
TGACGTCCCGATGAATGACTTTCAGTTGAGCGTGCAGATAGTGCAGCGCA
CTGACCACGCTCATGGCAATCTTGCCCAGCACGCTTTCCTCCATTCGCAG
ATCGTGAAGGAAGACCTTCGGATAGAACTTGTCCAGGCTGGTGCTCATCA
CCTCCATGCAAATCCAGACATCGCCCTCGCGATACATCGCACCATAGAAG
TGGACGGTGTAGGGGCAGTCGCTGGATCTCATCGATATGTCCAAATCCAT
TACAAGGCGGTGCTGTTCTCGAATATTTACGGTCATGGGTATGCGTTTGA
CGGCCAGGACCGTATCGGTTTGCTTATGGCGCATCTTATCCACGATGCCA
TAGGCGCCACGGCCCAGATCGCAGATCTTCTCGAGACTATCTGCATCGAT
GTCAAAGGTCCGGTCGCCAATTTGGAT
BO09747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12244-PA | 1005 | lic-RA | 94..1002 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lic-RA | 1951 | CG12244-RA | 432..1340 | 927..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13091646..13092002 | 927..571 | 1770 | 99.7 | Minus |
X | 23542271 | X | 13093158..13093375 | 236..19 | 1090 | 100 | Minus |
X | 23542271 | X | 13092282..13092489 | 439..232 | 1040 | 100 | Minus |
X | 23542271 | X | 13092087..13092222 | 572..437 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:40:28 has no hits.
BO09747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:19:47 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:48 Download gff for
BO09747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12244-PA | 94..1005 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:44 Download gff for
BO09747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 432..1346 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:41 Download gff for
BO09747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 432..1346 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:41 Download gff for
BO09747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13092089..13092221 | 438..570 | 100 | -> | Minus |
X | 13092284..13092486 | 235..437 | 100 | -> | Minus |
X | 13093160..13093381 | 11..234 | 98 | | Minus |
X | 13091646..13092002 | 571..927 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:44 Download gff for
BO09747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12985679..12986035 | 571..927 | 99 | -> | Minus |
arm_X | 12986122..12986254 | 438..570 | 100 | -> | Minus |
arm_X | 12986317..12986519 | 235..437 | 100 | -> | Minus |
arm_X | 12987193..12987414 | 11..234 | 98 | | Minus |
BO09747.5prime Sequence
859 bp (830 high quality bases) assembled on 2006-01-28
> BO09747.5prime
GAAGTTATCAGTCGACATGTCCAAACGCCACCGCCTCACGCCCTTTACCA
TTGCCAAGGAGCCAGAGGCCGCCATAGTCCCGCCACGCAACCTGGACTCG
CGGGCCACCATCCAAATTGGCGACCGGACCTTTGACATCGATGCAGATAG
TCTCGAGAAGATCTGCGATCTGGGCCGTGGCGCCTATGGCATCGTGGATA
AGATGCGCCATAAGCAAACCGATACGGTCCTGGCCGTCAAACGCATACCC
ATGACCGTAAATATTCGAGAACAGCACCGCCTTGTAATGGATTTGGACAT
ATCGATGAGATCCAGCGACTGCCCCTACACCGTCCACTTCTATGGTGCGA
TGTATCGCGAGGGCGATGTCTGGATTTGCATGGAGGTGATGAGCACCAGC
CTGGACAAGTTCTATCCGAAGGTCTTCCTTCACGATCTGCGAATGGAGGA
AAGCGTGCTGGGCAAGATTGCCATGAGCGTGGTCAGTGCGCTGCACTATC
TGCACGCTCAACTGAAAGTCATTCATCGGGACGTCAAGCCCTCGAACATA
CTGATCAATCGGGCCGGCCAGGTCAAGATCTGTGACTTTGGCATCTCAGG
CTACCTCGTCGACTCCATTGCCAAAACCATTGATGCCGGTTGCAAGCCGT
ACATGGCGCCGGAACGGATCGATCCCCAAGGAAATCCGGCGCAATACGAC
ATCAGGTCGGATGTTTGGTCGCTGGGCATCGGCATGATCGAAATGGCCAC
GGGCCGCTACCCATACGACAATTGGCGAACGCCATTTGAGCAACTGCGTC
AGGTGGTTGAGGACAGTCCGCCGCGCCTGCCGGAGGGGACATTTTCGCCG
GAAATCGAG
BO09747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12244-PA | 1005 | lic-RA | 1..843 | 17..859 | 4140 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lic-RA | 1951 | CG12244-RA | 339..1181 | 17..859 | 4170 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13091612..13092002 | 76..466 | 1940 | 99.7 | Plus |
X | 23542271 | X | 13092282..13092489 | 598..805 | 1040 | 100 | Plus |
X | 23542271 | X | 13092087..13092222 | 465..600 | 680 | 100 | Plus |
X | 23542271 | X | 13091483..13091541 | 17..75 | 295 | 100 | Plus |
X | 23542271 | X | 13093158..13093216 | 801..859 | 265 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:28:35 has no hits.
BO09747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:19:48 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:50 Download gff for
BO09747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12244-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:07 Download gff for
BO09747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 339..1181 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:01 Download gff for
BO09747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 339..1181 | 17..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:01 Download gff for
BO09747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13091483..13091541 | 17..75 | 100 | -> | Plus |
X | 13091612..13092002 | 76..466 | 99 | -> | Plus |
X | 13092089..13092221 | 467..599 | 100 | -> | Plus |
X | 13092284..13092486 | 600..802 | 100 | -> | Plus |
X | 13093160..13093216 | 803..859 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:07 Download gff for
BO09747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12986122..12986254 | 467..599 | 100 | -> | Plus |
arm_X | 12986317..12986519 | 600..802 | 100 | -> | Plus |
arm_X | 12987193..12987249 | 803..859 | 96 | | Plus |
arm_X | 12985516..12985574 | 17..75 | 100 | -> | Plus |
arm_X | 12985645..12986035 | 76..466 | 99 | -> | Plus |
BO09747.complete Sequence
1036 bp (1036 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631564
> BO09747.complete
GAAGTTATCAGTCGACATGTCCAAACGCCACCGCCTCACGCCCTTTACCA
TTGCCAAGGAGCCAGAGGCCGCCATAGTCCCGCCACGCAACCTGGACTCG
CGGGCCACCATCCAAATTGGCGACCGGACCTTTGACATCGATGCAGATAG
TCTCGAGAAGATCTGCGATCTGGGCCGTGGCGCCTATGGCATCGTGGATA
AGATGCGCCATAAGCAAACCGATACGGTCCTGGCCGTCAAACGCATACCC
ATGACCGTAAATATTCGAGAACAGCACCGCCTTGTAATGGATTTGGACAT
ATCGATGAGATCCAGCGACTGCCCCTACACCGTCCACTTCTATGGTGCGA
TGTATCGCGAGGGCGATGTCTGGATTTGCATGGAGGTGATGAGCACCAGC
CTGGACAAGTTCTATCCGAAGGTCTTCCTTCACGATCTGCGAATGGAGGA
AAGCGTGCTGGGCAAGATTGCCATGAGCGTGGTCAGTGCGCTGCACTATC
TGCACGCTCAACTGAAAGTCATTCATCGGGACGTCAAGCCCTCGAACATA
CTGATCAATCGGGCCGGCCAGGTCAAGATCTGTGACTTTGGCATCTCAGG
CTACCTCGTCGACTCCATTGCCAAAACCATTGATGCCGGTTGCAAGCCGT
ACATGGCGCCGGAACGGATCGATCCCCAAGGAAATCCGGCGCAATACGAC
ATCAGGTCGGATGTTTGGTCGCTGGGCATCGGCATGATCGAAATGGCCAC
GGGCCGCTACCCATACGACAATTGGCGAACGCCATTTGAGCAACTGCGTC
AGGTGGTTGAGGACAGTCCGCCGCGCCTGCCGGAGGGAACATTTTCGCCG
GAATTCGAGGACTTCATCGCCGTCTGCCTGCAGAAGGAGTATATGGCAAG
GCCCAACTACGAGCAGCTGCTCAAGCACAGCTTCATCGTGGAGCACCTGC
AGCGCAACACGGACATCTCGGAGTTCGTGGCCAGGATACTGGATCTGCCC
GACGCGCAGCCGGCGCAGGCAAGCTTTCTAGACCAT
BO09747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lic-RA | 1005 | CG12244-PA | 1..1002 | 17..1018 | 4995 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lic-RA | 1951 | CG12244-RA | 339..1340 | 17..1018 | 4995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13091612..13092002 | 76..466 | 1940 | 99.7 | Plus |
X | 23542271 | X | 13093158..13093375 | 801..1018 | 1090 | 100 | Plus |
X | 23542271 | X | 13092282..13092489 | 598..805 | 1040 | 100 | Plus |
X | 23542271 | X | 13092087..13092222 | 465..600 | 680 | 100 | Plus |
X | 23542271 | X | 13091483..13091541 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:25 has no hits.
BO09747.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:44 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 1..1005 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:12 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 361..1368 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:41 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 339..1340 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:44 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 361..1368 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:36 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lic-RA | 339..1340 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:36 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13091483..13091541 | 17..75 | 100 | -> | Plus |
X | 13091612..13092002 | 76..466 | 99 | -> | Plus |
X | 13092089..13092221 | 467..599 | 100 | -> | Plus |
X | 13092284..13092486 | 600..802 | 100 | -> | Plus |
X | 13093160..13093375 | 803..1020 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:41 Download gff for
BO09747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12985516..12985574 | 17..75 | 100 | -> | Plus |
arm_X | 12985645..12986035 | 76..466 | 99 | -> | Plus |
arm_X | 12986122..12986254 | 467..599 | 100 | -> | Plus |
arm_X | 12986317..12986519 | 600..802 | 100 | -> | Plus |
arm_X | 12987193..12987408 | 803..1020 | 99 | | Plus |
BO09747.pep Sequence
Translation from 16 to 1036
> BO09747.pep
MSKRHRLTPFTIAKEPEAAIVPPRNLDSRATIQIGDRTFDIDADSLEKIC
DLGRGAYGIVDKMRHKQTDTVLAVKRIPMTVNIREQHRLVMDLDISMRSS
DCPYTVHFYGAMYREGDVWICMEVMSTSLDKFYPKVFLHDLRMEESVLGK
IAMSVVSALHYLHAQLKVIHRDVKPSNILINRAGQVKICDFGISGYLVDS
IAKTIDAGCKPYMAPERIDPQGNPAQYDIRSDVWSLGIGMIEMATGRYPY
DNWRTPFEQLRQVVEDSPPRLPEGTFSPEFEDFIAVCLQKEYMARPNYEQ
LLKHSFIVEHLQRNTDISEFVARILDLPDAQPAQASFLDH
BO09747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lic-PA | 334 | CG12244-PA | 1..334 | 1..334 | 1756 | 100 | Plus |
Mkk4-PC | 424 | CG9738-PC | 111..406 | 35..326 | 812 | 54.2 | Plus |
Mkk4-PB | 424 | CG9738-PB | 111..406 | 35..326 | 812 | 54.2 | Plus |
Mkk4-PA | 424 | CG9738-PA | 111..406 | 35..326 | 812 | 54.2 | Plus |
hep-PE | 492 | CG4353-PE | 177..475 | 26..326 | 668 | 45.4 | Plus |