Clone BO09747 Report

Search the DGRC for BO09747

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:47
Vector:pDNR-Dual
Associated Gene/Transcriptlic-RA
Protein status:BO09747.pep: validated full length
Sequenced Size:1036

Clone Sequence Records

BO09747.3prime Sequence

927 bp (921 high quality bases) assembled on 2006-01-28

> BO09747.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCGGCTGCGCGTCGGGCAGATCCAGTA
TCCTGGCCACGAACTCCGAGATGTCCGTGTTGCGCTGCAGGTGCTCCACG
ATGAAGCTGTGCTTGAGCAGCTGCTCGTAGTTGGGCCTTGCCATATACTC
CTTCTGCAGGCAGACGGCGATGAAGTCCTCGAATTCCGGCGAAAATGTTC
CCTCCGGCAGGCGCGGCGGACTGTCCTCAACCACCTGACGCAGTTGCTCA
AATGGCGTTCGCCAATTGTCGTATGGGTAGCGGCCCGTGGCCATTTCGAT
CATGCCGATGCCCAGCGACCAAACATCCGACCTGATGTCGTATTGCGCCG
GATTTCCTTGGGGATCGATCCGTTCCGGCGCCATGTACGGCTTGCAACCG
GCATCAATGGTTTTGGCAATGGAGTCGACGAGGTAGCCTGAGATGCCAAA
GTCACAGATCTTGACCTGGCCGGCCCGATTGATCAGTATGTTCGAGGGCT
TGACGTCCCGATGAATGACTTTCAGTTGAGCGTGCAGATAGTGCAGCGCA
CTGACCACGCTCATGGCAATCTTGCCCAGCACGCTTTCCTCCATTCGCAG
ATCGTGAAGGAAGACCTTCGGATAGAACTTGTCCAGGCTGGTGCTCATCA
CCTCCATGCAAATCCAGACATCGCCCTCGCGATACATCGCACCATAGAAG
TGGACGGTGTAGGGGCAGTCGCTGGATCTCATCGATATGTCCAAATCCAT
TACAAGGCGGTGCTGTTCTCGAATATTTACGGTCATGGGTATGCGTTTGA
CGGCCAGGACCGTATCGGTTTGCTTATGGCGCATCTTATCCACGATGCCA
TAGGCGCCACGGCCCAGATCGCAGATCTTCTCGAGACTATCTGCATCGAT
GTCAAAGGTCCGGTCGCCAATTTGGAT

BO09747.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12244-PA 1005 lic-RA 94..1002 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
lic-RA 1951 CG12244-RA 432..1340 927..19 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13091646..13092002 927..571 1770 99.7 Minus
X 23542271 X 13093158..13093375 236..19 1090 100 Minus
X 23542271 X 13092282..13092489 439..232 1040 100 Minus
X 23542271 X 13092087..13092222 572..437 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:40:28 has no hits.

BO09747.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:19:47 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:48 Download gff for BO09747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12244-PA 94..1005 18..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:44 Download gff for BO09747.3prime
Subject Subject Range Query Range Percent Splice Strand
lic-RA 432..1346 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:41 Download gff for BO09747.3prime
Subject Subject Range Query Range Percent Splice Strand
lic-RA 432..1346 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:41 Download gff for BO09747.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13092089..13092221 438..570 100 -> Minus
X 13092284..13092486 235..437 100 -> Minus
X 13093160..13093381 11..234 98   Minus
X 13091646..13092002 571..927 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:44 Download gff for BO09747.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12985679..12986035 571..927 99 -> Minus
arm_X 12986122..12986254 438..570 100 -> Minus
arm_X 12986317..12986519 235..437 100 -> Minus
arm_X 12987193..12987414 11..234 98   Minus

BO09747.5prime Sequence

859 bp (830 high quality bases) assembled on 2006-01-28

> BO09747.5prime
GAAGTTATCAGTCGACATGTCCAAACGCCACCGCCTCACGCCCTTTACCA
TTGCCAAGGAGCCAGAGGCCGCCATAGTCCCGCCACGCAACCTGGACTCG
CGGGCCACCATCCAAATTGGCGACCGGACCTTTGACATCGATGCAGATAG
TCTCGAGAAGATCTGCGATCTGGGCCGTGGCGCCTATGGCATCGTGGATA
AGATGCGCCATAAGCAAACCGATACGGTCCTGGCCGTCAAACGCATACCC
ATGACCGTAAATATTCGAGAACAGCACCGCCTTGTAATGGATTTGGACAT
ATCGATGAGATCCAGCGACTGCCCCTACACCGTCCACTTCTATGGTGCGA
TGTATCGCGAGGGCGATGTCTGGATTTGCATGGAGGTGATGAGCACCAGC
CTGGACAAGTTCTATCCGAAGGTCTTCCTTCACGATCTGCGAATGGAGGA
AAGCGTGCTGGGCAAGATTGCCATGAGCGTGGTCAGTGCGCTGCACTATC
TGCACGCTCAACTGAAAGTCATTCATCGGGACGTCAAGCCCTCGAACATA
CTGATCAATCGGGCCGGCCAGGTCAAGATCTGTGACTTTGGCATCTCAGG
CTACCTCGTCGACTCCATTGCCAAAACCATTGATGCCGGTTGCAAGCCGT
ACATGGCGCCGGAACGGATCGATCCCCAAGGAAATCCGGCGCAATACGAC
ATCAGGTCGGATGTTTGGTCGCTGGGCATCGGCATGATCGAAATGGCCAC
GGGCCGCTACCCATACGACAATTGGCGAACGCCATTTGAGCAACTGCGTC
AGGTGGTTGAGGACAGTCCGCCGCGCCTGCCGGAGGGGACATTTTCGCCG
GAAATCGAG

BO09747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12244-PA 1005 lic-RA 1..843 17..859 4140 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
lic-RA 1951 CG12244-RA 339..1181 17..859 4170 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13091612..13092002 76..466 1940 99.7 Plus
X 23542271 X 13092282..13092489 598..805 1040 100 Plus
X 23542271 X 13092087..13092222 465..600 680 100 Plus
X 23542271 X 13091483..13091541 17..75 295 100 Plus
X 23542271 X 13093158..13093216 801..859 265 96.6 Plus
Blast to na_te.dros performed on 2015-02-12 11:28:35 has no hits.

BO09747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 04:19:48 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:26:50 Download gff for BO09747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12244-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:07 Download gff for BO09747.5prime
Subject Subject Range Query Range Percent Splice Strand
lic-RA 339..1181 17..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:01 Download gff for BO09747.5prime
Subject Subject Range Query Range Percent Splice Strand
lic-RA 339..1181 17..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:01 Download gff for BO09747.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13091483..13091541 17..75 100 -> Plus
X 13091612..13092002 76..466 99 -> Plus
X 13092089..13092221 467..599 100 -> Plus
X 13092284..13092486 600..802 100 -> Plus
X 13093160..13093216 803..859 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:07 Download gff for BO09747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12986122..12986254 467..599 100 -> Plus
arm_X 12986317..12986519 600..802 100 -> Plus
arm_X 12987193..12987249 803..859 96   Plus
arm_X 12985516..12985574 17..75 100 -> Plus
arm_X 12985645..12986035 76..466 99 -> Plus

BO09747.complete Sequence

1036 bp (1036 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631564

> BO09747.complete
GAAGTTATCAGTCGACATGTCCAAACGCCACCGCCTCACGCCCTTTACCA
TTGCCAAGGAGCCAGAGGCCGCCATAGTCCCGCCACGCAACCTGGACTCG
CGGGCCACCATCCAAATTGGCGACCGGACCTTTGACATCGATGCAGATAG
TCTCGAGAAGATCTGCGATCTGGGCCGTGGCGCCTATGGCATCGTGGATA
AGATGCGCCATAAGCAAACCGATACGGTCCTGGCCGTCAAACGCATACCC
ATGACCGTAAATATTCGAGAACAGCACCGCCTTGTAATGGATTTGGACAT
ATCGATGAGATCCAGCGACTGCCCCTACACCGTCCACTTCTATGGTGCGA
TGTATCGCGAGGGCGATGTCTGGATTTGCATGGAGGTGATGAGCACCAGC
CTGGACAAGTTCTATCCGAAGGTCTTCCTTCACGATCTGCGAATGGAGGA
AAGCGTGCTGGGCAAGATTGCCATGAGCGTGGTCAGTGCGCTGCACTATC
TGCACGCTCAACTGAAAGTCATTCATCGGGACGTCAAGCCCTCGAACATA
CTGATCAATCGGGCCGGCCAGGTCAAGATCTGTGACTTTGGCATCTCAGG
CTACCTCGTCGACTCCATTGCCAAAACCATTGATGCCGGTTGCAAGCCGT
ACATGGCGCCGGAACGGATCGATCCCCAAGGAAATCCGGCGCAATACGAC
ATCAGGTCGGATGTTTGGTCGCTGGGCATCGGCATGATCGAAATGGCCAC
GGGCCGCTACCCATACGACAATTGGCGAACGCCATTTGAGCAACTGCGTC
AGGTGGTTGAGGACAGTCCGCCGCGCCTGCCGGAGGGAACATTTTCGCCG
GAATTCGAGGACTTCATCGCCGTCTGCCTGCAGAAGGAGTATATGGCAAG
GCCCAACTACGAGCAGCTGCTCAAGCACAGCTTCATCGTGGAGCACCTGC
AGCGCAACACGGACATCTCGGAGTTCGTGGCCAGGATACTGGATCTGCCC
GACGCGCAGCCGGCGCAGGCAAGCTTTCTAGACCAT

BO09747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
lic-RA 1005 CG12244-PA 1..1002 17..1018 4995 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
lic-RA 1951 CG12244-RA 339..1340 17..1018 4995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13091612..13092002 76..466 1940 99.7 Plus
X 23542271 X 13093158..13093375 801..1018 1090 100 Plus
X 23542271 X 13092282..13092489 598..805 1040 100 Plus
X 23542271 X 13092087..13092222 465..600 680 100 Plus
X 23542271 X 13091483..13091541 17..75 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:28:25 has no hits.

BO09747.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:44 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
lic-RA 1..1005 17..1019 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:12 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
lic-RA 361..1368 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:41 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
lic-RA 339..1340 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:44 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
lic-RA 361..1368 17..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:36 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
lic-RA 339..1340 17..1020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:36 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
X 13091483..13091541 17..75 100 -> Plus
X 13091612..13092002 76..466 99 -> Plus
X 13092089..13092221 467..599 100 -> Plus
X 13092284..13092486 600..802 100 -> Plus
X 13093160..13093375 803..1020 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:41 Download gff for BO09747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12985516..12985574 17..75 100 -> Plus
arm_X 12985645..12986035 76..466 99 -> Plus
arm_X 12986122..12986254 467..599 100 -> Plus
arm_X 12986317..12986519 600..802 100 -> Plus
arm_X 12987193..12987408 803..1020 99   Plus

BO09747.pep Sequence

Translation from 16 to 1036

> BO09747.pep
MSKRHRLTPFTIAKEPEAAIVPPRNLDSRATIQIGDRTFDIDADSLEKIC
DLGRGAYGIVDKMRHKQTDTVLAVKRIPMTVNIREQHRLVMDLDISMRSS
DCPYTVHFYGAMYREGDVWICMEVMSTSLDKFYPKVFLHDLRMEESVLGK
IAMSVVSALHYLHAQLKVIHRDVKPSNILINRAGQVKICDFGISGYLVDS
IAKTIDAGCKPYMAPERIDPQGNPAQYDIRSDVWSLGIGMIEMATGRYPY
DNWRTPFEQLRQVVEDSPPRLPEGTFSPEFEDFIAVCLQKEYMARPNYEQ
LLKHSFIVEHLQRNTDISEFVARILDLPDAQPAQASFLDH

BO09747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
lic-PA 334 CG12244-PA 1..334 1..334 1756 100 Plus
Mkk4-PC 424 CG9738-PC 111..406 35..326 812 54.2 Plus
Mkk4-PB 424 CG9738-PB 111..406 35..326 812 54.2 Plus
Mkk4-PA 424 CG9738-PA 111..406 35..326 812 54.2 Plus
hep-PE 492 CG4353-PE 177..475 26..326 668 45.4 Plus