Clone Sequence Records
BO09752.3prime Sequence
946 bp (791 high quality bases) assembled on 2006-01-28
> BO09752.3prime
ATGGTCTAGAAAGCTTGCGATGGCGAACTCGCCGTGATCCTCCTCCAAGT
CGCAGGGTCTGCGGAACTCCTGTCCCCGCTCGTGGATCCACTTGTTGGAC
ACCCACTTGGTGCCTGTGAGTACGGGACAGGCGGCATGGCGGGTCCTCAC
GTCGCCCTGTCCATCTCTATGGAGATTCATCCAAAAAGCAGCCGTTCCCT
TCTTGGGAAACAGAGCGGTGTGCAGGGATGTGAAGACAGTGGCTCCTCCC
TGCTCCACGTCACTCATATAGAATAGAACGGTGGCAATGCGGTTGCCCAG
ATTGAGACCCTCAAAGGCGCGCTGCTCTTCTTTCCTGGCAAAGTCAAAGT
GCGGCTCGTAATGACCTCCAATGCCGTAGTTAACGACCTGCAGCTCCTCG
GCGGAGTCCATATCCAAGCCAGTCATGTCTGCAGTGCGCTGCACCACAGT
CTCAATCACCCGATCCTCCTGGGTCTTTAGCCAGGCGGACTTGCTGATCC
TGTAGTTCGCCGTCTCCAAGGCTCCGGTCACGGAGTTCTGGACCGTGGCC
CTGCGGAATCGCGGGCGGGCCATCCGCTTGATCAGATCGATCTCGCTGTC
GTACATGGCATCGTGATAGATAACAATGTACGGATCCGCGTGAACCTCCT
CCAATTTCAGGGGACCCAGACGCAGGAAGGGTACTCTGTTGGTGACATAG
CGGCATCGCAGGGATCGCAAATCCGATGGCGATGGCTTCAGTTCGCCTCT
GCACAACATCTCGTAAGCCCTTCGTTCTGTCATATCAAAGATGGCCGGGT
CACTCTTGGCCACGGGCAAATCGGACTTGGGCATTTCATCGGTGCCATCG
TCGCCCTTCATTTTCGCAATTGCAGCTGCTGGGCAATCTCCTTCTCGTAG
AACCGCTTGTTTTCTTTGGCTCTCTCGTGGTGGGGCAGCAGTTGGA
BO09752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31022-PA | 1653 | PH4alphaEFB-RA | 804..1650 | 865..19 | 3935 | 98.5 | Minus |
CG31022-PA | 1653 | PH4alphaEFB-RA | 722..803 | 946..865 | 335 | 96.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaEFB-RA | 2248 | CG31022-RA | 1057..1985 | 946..19 | 4395 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30484119..30484602 | 817..334 | 2270 | 97.9 | Minus |
3R | 32079331 | 3R | 30485227..30485392 | 267..102 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 30483932..30484062 | 946..817 | 560 | 96.9 | Minus |
3R | 32079331 | 3R | 30485453..30485536 | 102..19 | 420 | 100 | Minus |
3R | 32079331 | 3R | 30484686..30484752 | 334..268 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:21:34 has no hits.
BO09752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:59 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31022-PA | 723..1653 | 15..945 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:02 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31022-PA | 723..1653 | 15..945 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:00 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 1058..1988 | 15..945 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:20 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 1058..1988 | 15..945 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:20 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30483933..30484062 | 817..945 | 96 | -> | Minus |
3R | 30484120..30484602 | 334..816 | 97 | -> | Minus |
3R | 30484687..30484752 | 268..333 | 98 | -> | Minus |
3R | 30485227..30485392 | 102..267 | 99 | -> | Minus |
3R | 30485454..30485539 | 15..101 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:00 Download gff for
BO09752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26309655..26309784 | 817..945 | 96 | -> | Minus |
arm_3R | 26309842..26310324 | 334..816 | 97 | -> | Minus |
arm_3R | 26310409..26310474 | 268..333 | 98 | -> | Minus |
arm_3R | 26310949..26311114 | 102..267 | 99 | -> | Minus |
arm_3R | 26311176..26311261 | 15..101 | 97 | | Minus |
BO09752.5prime Sequence
815 bp (769 high quality bases) assembled on 2006-01-28
> BO09752.5prime
GAAGTTATCAGTCGACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGG
GAATCCTGCTCCTTGTGGGTGGTCCTGCTAACGGAGAGGTGTACACGGCC
TTGGCCGAGATGGAGGAACTTCTGGAGACTGAATCCGTACTGATTACCAA
CTTGGAGGGCTACATACGCGTCCAGGAGGACAAGCTGAACTTTCTCAAGA
ACAAAATGGACGAGTACCAGAGGGAGCACTCGGATGCCTCCCATGATATA
ACCGCCTATGTATCCAATCCAATCAATGCGTACCTGCTGACTAAGCGGCT
AACCACCGATTGGCGGCAGGTGGAGAACCTCATGGAGCACGACGTGGGCA
CGGATTTCTTGCAGAACATCACCCAGTATCGCAGTCTCCTGAAGTTCCCC
TCCGACGAGGACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGA
CACCTACCAACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGCA
TTCAGTACAGCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGA
CAATCGTACGTGAACCACGACTACTACCACACGGTGCTCTGGATGAACGA
GGCGATGGCCCGCATGCTGGAGGAGCCGACCAACCACACCCAGAGCTTCA
CCAAGGCTGACATCCTCGAGTACCTGGCCTTCTCCACCTACAAGGAGGGC
AACATAGAGAGCGCGCTGACAATGACCAACGAGCTGCTCCAACTGCTGCC
CCACCACGAGAGAGCCAATGGAAACAAGCGGTTCTACGAGAAGGAGATTG
CCCAGCAGCTGCAAT
BO09752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31022-PA | 1653 | PH4alphaEFB-RA | 1..797 | 17..813 | 3785 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaEFB-RA | 2248 | CG31022-RA | 336..1132 | 17..813 | 3865 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30479119..30479427 | 202..510 | 1485 | 98.7 | Plus |
3R | 32079331 | 3R | 30479590..30479781 | 508..699 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 30474044..30474228 | 17..201 | 880 | 98.4 | Plus |
3R | 32079331 | 3R | 30483892..30484007 | 698..813 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:02:38 has no hits.
BO09752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:01 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31022-PA | 1..799 | 17..815 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:03 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31022-PA | 1..799 | 17..815 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:46:06 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 331..1134 | 12..815 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:59 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 331..1134 | 12..815 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:59 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30474039..30474228 | 12..201 | 97 | -> | Plus |
3R | 30479119..30479427 | 202..510 | 98 | -> | Plus |
3R | 30479593..30479780 | 511..698 | 99 | -> | Plus |
3R | 30483893..30484009 | 699..815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:46:06 Download gff for
BO09752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26299761..26299950 | 12..201 | 97 | -> | Plus |
arm_3R | 26304841..26305149 | 202..510 | 98 | -> | Plus |
arm_3R | 26305315..26305502 | 511..698 | 99 | -> | Plus |
arm_3R | 26309615..26309731 | 699..815 | 99 | | Plus |
BO09752.complete Sequence
1684 bp (1684 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631565
> BO09752.complete
GAAGTTATCAGTCGACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGG
GAATCCTGCTCCTTGTGGGTGGTCCTGCTAACGGAGAGGTGTACACGGCC
TTGGCCGAGATGGAGGAACTTCTGGAGACTGAATCCGTACTGATTACCAA
CTTGGAGGGCTACATACGCGTCCAGGAGGACAAGCTGAACTTTCTCAAGA
ACAAAATGGACGAGTACCAGAGGGAGCACTCGGATGCCTCCCATGATATA
ACCGCCTATGTATCCAATCCAATCAATGCGTACCTGCTGACTAAGCGGCT
AACCACCGATTGGCGGCAGGTGGAGAACCTCATGGAGCACGACGTGGGCA
CGGATTTCTTGCAGAACATCACCCAGTATCGCAGTCTCCTGAAGTTCCCC
TCCGACGAGGACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGA
CACCTACCAACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGCA
TTCAGTACAGCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGA
CAATCGTACGTGAACCACGACTACTACCACACGGTGCTCTGGATGAACGA
GGCGATGGCCCGCATGCTGGAGGAGCCGACCAACCACACCCAGAGCTTCA
CCAAGGCTGACATCCTCGAGTACCTGGCCTTCTCCACCTACAAGGAGGGC
AACATAGAGAGCGCGCTGACAATGACCAACGAGCTGCTCCAACTGCTGCC
CCACCACGAGAGAGCCAATGGAAACAAGCGGTTCTACGAGAAGGAGATTG
CCCAGCAGCTGCAATTGCGGAAAATGAAGGGCGACGATGGCACCGATGAA
ATGCCCAAGTCCGATTTGCCCGTGGCCAAGAGTGACCCGGCCATCTTTGA
TATGACAGAACGAAGGGCTTACGAGATGTTGTGCAGAGGCGAACTGAAGC
CATCGCCATCGGATTTGCGATCCCTGCGATGCCGCTATGTCACCAACAGA
GTACCCTTCCTGCGTCTGGGTCCCCTGAAATTGGAGGAGGTTCACGCGGA
TCCGTACATTGTTATCTATCACGATGCCATGTACGACAGCGAGATCGATC
TGATCAAGCGGATGGCCCGCCCGCGATTCCGCAGGGCCACGGTCCAGAAC
TCCGTGACCGGAGCCTTGGAGACGGCGAACTACAGGATCAGCAAGTCCGC
CTGGCTAAAGACCCAGGAGGATCGGGTGATTGAGACTGTGGTGCAGCGCA
CTGCAGACATGACTGGCTTGGATATGGACTCCGCCGAGGAGCTGCAGGTC
GTTAACTACGGCATTGGAGGTCATTACGAGCCGCACTTTGACTTTGCCAG
GAAAGAAGAGCAGCGCGCCTTTGAGGGTCTCAATCTGGGCAACCGCATTG
CCACCGTTCTATTCTATATGAGTGACGTGGAGCAGGGAGGAGCCACTGTC
TTCACATCCCTGCACACCGCTCTGTTTCCCAAGAAGGGAACGGCTGCTTT
TTGGATGAATCTCCATAGAGATGGACAGGGCGACGTGAGGACCCGCCATG
CCGCCTGTCCCGTACTCACAGGCACCAAGTGGGTGTCCAACAAGTGGATC
CACGAGCGGGGACAGGAGTTCCGCAGACCCTGCGACTTGGAGGAGGATCA
CGGCGAGTTCGCCATCGCAAGCTTTCTAGACCAT
BO09752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaEFB-RA | 1653 | CG31022-PA | 1..1650 | 17..1666 | 7935 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaEFB-RA | 2248 | CG31022-RA | 336..1985 | 17..1666 | 7935 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30484119..30484602 | 868..1351 | 2270 | 97.9 | Plus |
3R | 32079331 | 3R | 30479119..30479427 | 202..510 | 1485 | 98.7 | Plus |
3R | 32079331 | 3R | 30479590..30479781 | 508..699 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 30474044..30474228 | 17..201 | 880 | 98.4 | Plus |
3R | 32079331 | 3R | 30483892..30484062 | 698..868 | 840 | 99.4 | Plus |
3R | 32079331 | 3R | 30485227..30485392 | 1418..1583 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 30485453..30485536 | 1583..1666 | 420 | 100 | Plus |
3R | 32079331 | 3R | 30484686..30484752 | 1351..1417 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:30:55 has no hits.
BO09752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:01 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 1..1653 | 17..1670 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:11 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 334..1983 | 17..1668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:25 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 336..1985 | 17..1668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:01 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 329..1986 | 12..1670 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:38 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaEFB-RA | 336..1985 | 17..1668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:38 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30483893..30484062 | 699..868 | 99 | -> | Plus |
3R | 30484120..30484602 | 869..1351 | 97 | -> | Plus |
3R | 30484687..30484752 | 1352..1417 | 98 | -> | Plus |
3R | 30485227..30485392 | 1418..1583 | 99 | -> | Plus |
3R | 30485454..30485536 | 1584..1668 | 97 | | Plus |
3R | 30479593..30479780 | 511..698 | 99 | -> | Plus |
3R | 30474044..30474228 | 17..201 | 98 | -> | Plus |
3R | 30479119..30479427 | 202..510 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:25 Download gff for
BO09752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26305315..26305502 | 511..698 | 99 | -> | Plus |
arm_3R | 26309615..26309784 | 699..868 | 99 | -> | Plus |
arm_3R | 26299766..26299950 | 17..201 | 98 | -> | Plus |
arm_3R | 26304841..26305149 | 202..510 | 98 | -> | Plus |
arm_3R | 26309842..26310324 | 869..1351 | 97 | -> | Plus |
arm_3R | 26310409..26310474 | 1352..1417 | 98 | -> | Plus |
arm_3R | 26310949..26311114 | 1418..1583 | 99 | -> | Plus |
arm_3R | 26311176..26311258 | 1584..1668 | 97 | | Plus |
BO09752.pep Sequence
Translation from 16 to 1684
> BO09752.pep
MAADWRLMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYI
RVQEDKLNFLKNKMDEYQREHSDASHDITAYVSNPINAYLLTKRLTTDWR
QVENLMEHDVGTDFLQNITQYRSLLKFPSDEDLNGAAVALLRLQDTYQLD
TSSVARGKLNGIQYSTEMSSDDCFELGRQSYVNHDYYHTVLWMNEAMARM
LEEPTNHTQSFTKADILEYLAFSTYKEGNIESALTMTNELLQLLPHHERA
NGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTERR
AYEMLCRGELKPSPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVI
YHDAMYDSEIDLIKRMARPRFRRATVQNSVTGALETANYRISKSAWLKTQ
EDRVIETVVQRTADMTGLDMDSAEELQVVNYGIGGHYEPHFDFARKEEQR
AFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNLH
RDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPCDLEEDHGEFAI
ASFLDH
BO09752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaEFB-PA | 550 | CG31022-PA | 1..550 | 1..550 | 2877 | 100 | Plus |
PH4alphaNE1-PA | 537 | CG9728-PA | 4..527 | 7..545 | 947 | 38.5 | Plus |
PH4alphaMP-PA | 535 | CG9726-PA | 8..522 | 7..542 | 924 | 38.7 | Plus |
PH4alphaSG1-PA | 540 | CG31014-PA | 2..534 | 5..548 | 924 | 36.8 | Plus |
CG9698-PA | 547 | CG9698-PA | 24..531 | 24..544 | 886 | 36.7 | Plus |