Clone BO09752 Report

Search the DGRC for BO09752

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaEFB-RA
Protein status:BO09752.pep: validated full length
Sequenced Size:1684

Clone Sequence Records

BO09752.3prime Sequence

946 bp (791 high quality bases) assembled on 2006-01-28

> BO09752.3prime
ATGGTCTAGAAAGCTTGCGATGGCGAACTCGCCGTGATCCTCCTCCAAGT
CGCAGGGTCTGCGGAACTCCTGTCCCCGCTCGTGGATCCACTTGTTGGAC
ACCCACTTGGTGCCTGTGAGTACGGGACAGGCGGCATGGCGGGTCCTCAC
GTCGCCCTGTCCATCTCTATGGAGATTCATCCAAAAAGCAGCCGTTCCCT
TCTTGGGAAACAGAGCGGTGTGCAGGGATGTGAAGACAGTGGCTCCTCCC
TGCTCCACGTCACTCATATAGAATAGAACGGTGGCAATGCGGTTGCCCAG
ATTGAGACCCTCAAAGGCGCGCTGCTCTTCTTTCCTGGCAAAGTCAAAGT
GCGGCTCGTAATGACCTCCAATGCCGTAGTTAACGACCTGCAGCTCCTCG
GCGGAGTCCATATCCAAGCCAGTCATGTCTGCAGTGCGCTGCACCACAGT
CTCAATCACCCGATCCTCCTGGGTCTTTAGCCAGGCGGACTTGCTGATCC
TGTAGTTCGCCGTCTCCAAGGCTCCGGTCACGGAGTTCTGGACCGTGGCC
CTGCGGAATCGCGGGCGGGCCATCCGCTTGATCAGATCGATCTCGCTGTC
GTACATGGCATCGTGATAGATAACAATGTACGGATCCGCGTGAACCTCCT
CCAATTTCAGGGGACCCAGACGCAGGAAGGGTACTCTGTTGGTGACATAG
CGGCATCGCAGGGATCGCAAATCCGATGGCGATGGCTTCAGTTCGCCTCT
GCACAACATCTCGTAAGCCCTTCGTTCTGTCATATCAAAGATGGCCGGGT
CACTCTTGGCCACGGGCAAATCGGACTTGGGCATTTCATCGGTGCCATCG
TCGCCCTTCATTTTCGCAATTGCAGCTGCTGGGCAATCTCCTTCTCGTAG
AACCGCTTGTTTTCTTTGGCTCTCTCGTGGTGGGGCAGCAGTTGGA

BO09752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31022-PA 1653 PH4alphaEFB-RA 804..1650 865..19 3935 98.5 Minus
CG31022-PA 1653 PH4alphaEFB-RA 722..803 946..865 335 96.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaEFB-RA 2248 CG31022-RA 1057..1985 946..19 4395 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30484119..30484602 817..334 2270 97.9 Minus
3R 32079331 3R 30485227..30485392 267..102 815 99.4 Minus
3R 32079331 3R 30483932..30484062 946..817 560 96.9 Minus
3R 32079331 3R 30485453..30485536 102..19 420 100 Minus
3R 32079331 3R 30484686..30484752 334..268 320 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 01:21:34 has no hits.

BO09752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:19:59 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31022-PA 723..1653 15..945 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:02 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31022-PA 723..1653 15..945 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:26:00 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 1058..1988 15..945 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:20 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 1058..1988 15..945 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:20 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30483933..30484062 817..945 96 -> Minus
3R 30484120..30484602 334..816 97 -> Minus
3R 30484687..30484752 268..333 98 -> Minus
3R 30485227..30485392 102..267 99 -> Minus
3R 30485454..30485539 15..101 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:26:00 Download gff for BO09752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26309655..26309784 817..945 96 -> Minus
arm_3R 26309842..26310324 334..816 97 -> Minus
arm_3R 26310409..26310474 268..333 98 -> Minus
arm_3R 26310949..26311114 102..267 99 -> Minus
arm_3R 26311176..26311261 15..101 97   Minus

BO09752.5prime Sequence

815 bp (769 high quality bases) assembled on 2006-01-28

> BO09752.5prime
GAAGTTATCAGTCGACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGG
GAATCCTGCTCCTTGTGGGTGGTCCTGCTAACGGAGAGGTGTACACGGCC
TTGGCCGAGATGGAGGAACTTCTGGAGACTGAATCCGTACTGATTACCAA
CTTGGAGGGCTACATACGCGTCCAGGAGGACAAGCTGAACTTTCTCAAGA
ACAAAATGGACGAGTACCAGAGGGAGCACTCGGATGCCTCCCATGATATA
ACCGCCTATGTATCCAATCCAATCAATGCGTACCTGCTGACTAAGCGGCT
AACCACCGATTGGCGGCAGGTGGAGAACCTCATGGAGCACGACGTGGGCA
CGGATTTCTTGCAGAACATCACCCAGTATCGCAGTCTCCTGAAGTTCCCC
TCCGACGAGGACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGA
CACCTACCAACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGCA
TTCAGTACAGCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGA
CAATCGTACGTGAACCACGACTACTACCACACGGTGCTCTGGATGAACGA
GGCGATGGCCCGCATGCTGGAGGAGCCGACCAACCACACCCAGAGCTTCA
CCAAGGCTGACATCCTCGAGTACCTGGCCTTCTCCACCTACAAGGAGGGC
AACATAGAGAGCGCGCTGACAATGACCAACGAGCTGCTCCAACTGCTGCC
CCACCACGAGAGAGCCAATGGAAACAAGCGGTTCTACGAGAAGGAGATTG
CCCAGCAGCTGCAAT

BO09752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31022-PA 1653 PH4alphaEFB-RA 1..797 17..813 3785 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaEFB-RA 2248 CG31022-RA 336..1132 17..813 3865 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30479119..30479427 202..510 1485 98.7 Plus
3R 32079331 3R 30479590..30479781 508..699 945 99.5 Plus
3R 32079331 3R 30474044..30474228 17..201 880 98.4 Plus
3R 32079331 3R 30483892..30484007 698..813 580 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:02:38 has no hits.

BO09752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:01 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31022-PA 1..799 17..815 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:03 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31022-PA 1..799 17..815 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:46:06 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 331..1134 12..815 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:59 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 331..1134 12..815 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:59 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30474039..30474228 12..201 97 -> Plus
3R 30479119..30479427 202..510 98 -> Plus
3R 30479593..30479780 511..698 99 -> Plus
3R 30483893..30484009 699..815 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:46:06 Download gff for BO09752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26299761..26299950 12..201 97 -> Plus
arm_3R 26304841..26305149 202..510 98 -> Plus
arm_3R 26305315..26305502 511..698 99 -> Plus
arm_3R 26309615..26309731 699..815 99   Plus

BO09752.complete Sequence

1684 bp (1684 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631565

> BO09752.complete
GAAGTTATCAGTCGACATGGCAGCGGACTGGCGATTGATGCTCCTGCTGG
GAATCCTGCTCCTTGTGGGTGGTCCTGCTAACGGAGAGGTGTACACGGCC
TTGGCCGAGATGGAGGAACTTCTGGAGACTGAATCCGTACTGATTACCAA
CTTGGAGGGCTACATACGCGTCCAGGAGGACAAGCTGAACTTTCTCAAGA
ACAAAATGGACGAGTACCAGAGGGAGCACTCGGATGCCTCCCATGATATA
ACCGCCTATGTATCCAATCCAATCAATGCGTACCTGCTGACTAAGCGGCT
AACCACCGATTGGCGGCAGGTGGAGAACCTCATGGAGCACGACGTGGGCA
CGGATTTCTTGCAGAACATCACCCAGTATCGCAGTCTCCTGAAGTTCCCC
TCCGACGAGGACCTCAATGGCGCGGCGGTGGCCTTGCTCCGCCTGCAGGA
CACCTACCAACTGGACACTTCGAGTGTGGCGAGGGGCAAGCTGAATGGCA
TTCAGTACAGCACGGAAATGTCCTCGGATGACTGCTTCGAGTTGGGTAGA
CAATCGTACGTGAACCACGACTACTACCACACGGTGCTCTGGATGAACGA
GGCGATGGCCCGCATGCTGGAGGAGCCGACCAACCACACCCAGAGCTTCA
CCAAGGCTGACATCCTCGAGTACCTGGCCTTCTCCACCTACAAGGAGGGC
AACATAGAGAGCGCGCTGACAATGACCAACGAGCTGCTCCAACTGCTGCC
CCACCACGAGAGAGCCAATGGAAACAAGCGGTTCTACGAGAAGGAGATTG
CCCAGCAGCTGCAATTGCGGAAAATGAAGGGCGACGATGGCACCGATGAA
ATGCCCAAGTCCGATTTGCCCGTGGCCAAGAGTGACCCGGCCATCTTTGA
TATGACAGAACGAAGGGCTTACGAGATGTTGTGCAGAGGCGAACTGAAGC
CATCGCCATCGGATTTGCGATCCCTGCGATGCCGCTATGTCACCAACAGA
GTACCCTTCCTGCGTCTGGGTCCCCTGAAATTGGAGGAGGTTCACGCGGA
TCCGTACATTGTTATCTATCACGATGCCATGTACGACAGCGAGATCGATC
TGATCAAGCGGATGGCCCGCCCGCGATTCCGCAGGGCCACGGTCCAGAAC
TCCGTGACCGGAGCCTTGGAGACGGCGAACTACAGGATCAGCAAGTCCGC
CTGGCTAAAGACCCAGGAGGATCGGGTGATTGAGACTGTGGTGCAGCGCA
CTGCAGACATGACTGGCTTGGATATGGACTCCGCCGAGGAGCTGCAGGTC
GTTAACTACGGCATTGGAGGTCATTACGAGCCGCACTTTGACTTTGCCAG
GAAAGAAGAGCAGCGCGCCTTTGAGGGTCTCAATCTGGGCAACCGCATTG
CCACCGTTCTATTCTATATGAGTGACGTGGAGCAGGGAGGAGCCACTGTC
TTCACATCCCTGCACACCGCTCTGTTTCCCAAGAAGGGAACGGCTGCTTT
TTGGATGAATCTCCATAGAGATGGACAGGGCGACGTGAGGACCCGCCATG
CCGCCTGTCCCGTACTCACAGGCACCAAGTGGGTGTCCAACAAGTGGATC
CACGAGCGGGGACAGGAGTTCCGCAGACCCTGCGACTTGGAGGAGGATCA
CGGCGAGTTCGCCATCGCAAGCTTTCTAGACCAT

BO09752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaEFB-RA 1653 CG31022-PA 1..1650 17..1666 7935 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaEFB-RA 2248 CG31022-RA 336..1985 17..1666 7935 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30484119..30484602 868..1351 2270 97.9 Plus
3R 32079331 3R 30479119..30479427 202..510 1485 98.7 Plus
3R 32079331 3R 30479590..30479781 508..699 945 99.5 Plus
3R 32079331 3R 30474044..30474228 17..201 880 98.4 Plus
3R 32079331 3R 30483892..30484062 698..868 840 99.4 Plus
3R 32079331 3R 30485227..30485392 1418..1583 815 99.4 Plus
3R 32079331 3R 30485453..30485536 1583..1666 420 100 Plus
3R 32079331 3R 30484686..30484752 1351..1417 320 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 08:30:55 has no hits.

BO09752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:01 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 1..1653 17..1670 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:11 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 334..1983 17..1668 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:25 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 336..1985 17..1668 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:01 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 329..1986 12..1670 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:38 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaEFB-RA 336..1985 17..1668 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:38 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30483893..30484062 699..868 99 -> Plus
3R 30484120..30484602 869..1351 97 -> Plus
3R 30484687..30484752 1352..1417 98 -> Plus
3R 30485227..30485392 1418..1583 99 -> Plus
3R 30485454..30485536 1584..1668 97   Plus
3R 30479593..30479780 511..698 99 -> Plus
3R 30474044..30474228 17..201 98 -> Plus
3R 30479119..30479427 202..510 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:25 Download gff for BO09752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26305315..26305502 511..698 99 -> Plus
arm_3R 26309615..26309784 699..868 99 -> Plus
arm_3R 26299766..26299950 17..201 98 -> Plus
arm_3R 26304841..26305149 202..510 98 -> Plus
arm_3R 26309842..26310324 869..1351 97 -> Plus
arm_3R 26310409..26310474 1352..1417 98 -> Plus
arm_3R 26310949..26311114 1418..1583 99 -> Plus
arm_3R 26311176..26311258 1584..1668 97   Plus

BO09752.pep Sequence

Translation from 16 to 1684

> BO09752.pep
MAADWRLMLLLGILLLVGGPANGEVYTALAEMEELLETESVLITNLEGYI
RVQEDKLNFLKNKMDEYQREHSDASHDITAYVSNPINAYLLTKRLTTDWR
QVENLMEHDVGTDFLQNITQYRSLLKFPSDEDLNGAAVALLRLQDTYQLD
TSSVARGKLNGIQYSTEMSSDDCFELGRQSYVNHDYYHTVLWMNEAMARM
LEEPTNHTQSFTKADILEYLAFSTYKEGNIESALTMTNELLQLLPHHERA
NGNKRFYEKEIAQQLQLRKMKGDDGTDEMPKSDLPVAKSDPAIFDMTERR
AYEMLCRGELKPSPSDLRSLRCRYVTNRVPFLRLGPLKLEEVHADPYIVI
YHDAMYDSEIDLIKRMARPRFRRATVQNSVTGALETANYRISKSAWLKTQ
EDRVIETVVQRTADMTGLDMDSAEELQVVNYGIGGHYEPHFDFARKEEQR
AFEGLNLGNRIATVLFYMSDVEQGGATVFTSLHTALFPKKGTAAFWMNLH
RDGQGDVRTRHAACPVLTGTKWVSNKWIHERGQEFRRPCDLEEDHGEFAI
ASFLDH

BO09752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaEFB-PA 550 CG31022-PA 1..550 1..550 2877 100 Plus
PH4alphaNE1-PA 537 CG9728-PA 4..527 7..545 947 38.5 Plus
PH4alphaMP-PA 535 CG9726-PA 8..522 7..542 924 38.7 Plus
PH4alphaSG1-PA 540 CG31014-PA 2..534 5..548 924 36.8 Plus
CG9698-PA 547 CG9698-PA 24..531 24..544 886 36.7 Plus