Clone Sequence Records
BO09759.3prime Sequence
916 bp (812 high quality bases) assembled on 2006-01-28
> BO09759.3prime
ATGGTCTAGAAAGCTTGCGCGAACTTGGGGCAACGGCTGGCCAAGCTTCT
TTGTCCAGTCCTCACGGGTGGCCGGGTCTTCGATCTGGCCACGACCGAGG
CACTTGCCCTGCGAGATTAGCTCGGCAAACTGGGCCACAATCGGATCCCG
GCCGCACGAAGCCACCGCTGTCACCGTATCCGCCTCGTTGATGAAGTAGG
CCACAAACTTAAAGTCCTCCATGCTGCCGTCAATGATCACATCCTTGTAA
GAGCCATGCCCGGCATACCGAATTCCCTTGCCGAAGATGAGGGTGAAAAA
GAAGGGCACGGCCTCCAGCTTCTTTACCCCGCCGCACATGTTGATGGCCG
CCACTCGTCCATGGTATTGAGCCAGCTGGTAATGCCCGATGTTCACGCGA
TCGTGGGCCAGCCCGTGAATGTGGGCGTTTGCTATATCACCGCCCACATA
CACATCGGGTACATTGGACTCCAGGAAATCAGTGACGTCCACGGATCCGT
TACGATTTACCTTCACGCCCGACTTGGCCAGAAATTGGGTGTTGAGCTTG
GAGCCAGTGCCCAAGATCAGCAGATCGCAAGGCAGACGCGTGTCATCTAC
CAGCACCACCTCTGATACCTTGCCGTCTTCGTTGCCAACGATCTCGGCGA
TGCCGCTCTCCATGCGCATGACCACCTTGTTGTCCTCGAACAGCTGGAGC
ACCCTCTGACCAATCTCCGCGCCGAATGCGGCCTTAAGTGGGACGTTTTC
ACGACCCACAACCGTGACGCTTTGCACTTTGGAGACCAACCCAGCAGCTG
CCTCCAAGGCGATAAAGCTCGATCCCAGACAGACGACGCGGGACTCCGGG
GTGATCGATGCCAATATCGCCTTTGTATCCGCCAACTCTCGGACAGTGCG
GACGTTCTCCAAGTTA
BO09759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PE | 1944 | CG4199-RE | 1044..1941 | 916..19 | 4490 | 100 | Minus |
| CG4199-PF | 1998 | CG4199-RF | 1098..1995 | 916..19 | 4490 | 100 | Minus |
| CG4199-PC | 1782 | CG4199-RC | 882..1779 | 916..19 | 4490 | 100 | Minus |
| CG4199-PD | 1782 | CG4199-RD | 882..1779 | 916..19 | 4490 | 100 | Minus |
| CG4199-PB | 1782 | CG4199-RB | 882..1779 | 916..19 | 4490 | 100 | Minus |
| CG4199-PA | 1659 | CG4199-RA | 759..1656 | 916..19 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 1182..2079 | 916..19 | 4490 | 100 | Minus |
| CG4199-RH | 2521 | CG4199-RH | 1347..2244 | 916..19 | 4490 | 100 | Minus |
| CG4199-RG | 2317 | CG4199-RG | 1143..2040 | 916..19 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2066712..2067609 | 19..916 | 4490 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:36:26 has no hits.
BO09759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:11 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 883..1782 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:18 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PA | 760..1659 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:01:56 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 1144..2043 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:06:25 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 1144..2043 | 15..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:06:25 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2066708..2067608 | 15..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:01:56 Download gff for
BO09759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1960741..1961641 | 15..915 | 99 | | Plus |
BO09759.5prime Sequence
890 bp (781 high quality bases) assembled on 2006-01-28
> BO09759.5prime
GAAGTTATCAGTCGTCATGGGTTCCGTCAACTGCAAGGAGTACAAGACCA
CGGGCAGCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCC
TACCAGTCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGA
AGAGTCTTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCA
GAGTTACGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAG
GACACCCGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGG
TGCTAAGTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTT
TGGGTCGTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAAC
GGAGACATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGT
GGAAGTGGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATC
TGGTGAATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGAT
CAGCGAGTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGT
GGAAACCATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCC
GCGAAGACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAAC
CTTGAGATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTA
CGATATCGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTC
AGAGAGAGCTGCACTGCAGCAATGGCTACGTGGTGAAATACGATAAAATC
TACCTGGGCACAGGCTGCTCCGCCTTCCGGCCGCCTATTC
BO09759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PE | 1944 | CG4199-RE | 163..1036 | 17..890 | 4295 | 99.6 | Plus |
| CG4199-PF | 1998 | CG4199-RF | 217..1090 | 17..890 | 4295 | 99.6 | Plus |
| CG4199-PC | 1782 | CG4199-RC | 1..874 | 17..890 | 4295 | 99.6 | Plus |
| CG4199-PD | 1782 | CG4199-RD | 1..874 | 17..890 | 4295 | 99.6 | Plus |
| CG4199-PB | 1782 | CG4199-RB | 1..874 | 17..890 | 4295 | 99.6 | Plus |
| CG4199-PA | 1659 | CG4199-RA | 1..751 | 140..890 | 3680 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 301..1174 | 17..890 | 4325 | 99.7 | Plus |
| CG4199-RH | 2521 | CG4199-RH | 466..1339 | 17..890 | 4325 | 99.7 | Plus |
| CG4199-RG | 2317 | CG4199-RG | 262..1135 | 17..890 | 4325 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2067617..2068430 | 890..77 | 4010 | 99.5 | Minus |
| X | 23542271 | X | 2071358..2071426 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:19 has no hits.
BO09759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:12 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:19 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:34 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..1135 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:00 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..1135 | 17..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:00 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2071360..2071426 | 17..83 | 100 | | Minus |
| X | 2067617..2068423 | 84..890 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:34 Download gff for
BO09759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1961650..1962456 | 84..890 | 99 | <- | Minus |
| arm_X | 1965393..1965459 | 17..83 | 100 | | Minus |
BO09759.complete Sequence
1813 bp assembled on 2008-08-14
GenBank Submission: FJ631566
> BO09759.complete
GAAGTTATCAGTCGTCATGGGTTCCGTCAACTGCAAGGAGTACAAGACCA
CGGGCAGCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCC
TACCAGTCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGA
AGAGTCTTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCA
GAGTTACGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAG
GACACCCGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGG
TGCTAAGTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTT
TGGGTCGTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAAC
GGAGACATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGT
GGAAGTGGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATC
TGGTGAATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGAT
CAGCGAGTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGT
GGAAACCATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCC
GCGAAGACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAAC
CTTGAGATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTA
CGATATCGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTC
AGAAAGAGCTGCACTGCAGCAATGGCTACGTGGTGAAGTACGATAAAATC
TACCTGGCCACAGGCTGCTCCGCCTTCCGGCCGCCTATTCCCGGTGTTAA
CTTGGAGAACGTCCGCACTGTCCGAGAGTTGGCGGATACAAAGGCGATAT
TGGCATCGATCACCCCGGAGTCCCGCGTCGTCTGTCTGGGATCGAGCTTT
ATCGCCTTGGAGGCAGCTGCTGGGTTGGTCTCCAAAGTGCAAAGCGTCAC
GGTTGTGGGTCGTGAAAACGTCCCACTTAAGGCCGCATTCGGCGCGGAGA
TTGGTCAGAGGGTGCTCCAGCTGTTCGAGGACAACAAGGTGGTCATGCGC
ATGGAGAGCGGCATCGCCGAGATCGTTGGCAACGAAGACGGCAAGGTATC
AGAGGTGGTGCTGGTAGATGACACGCGTCTGCCTTGCGATCTGCTGATCT
TGGGCACTGGCTCCAAGCTCAACACCCAATTTCTGGCCAAGTCGGGCGTG
AAGGTAAATCGTAACGGATCCGTGGACGTCACTGATTTCCTGGAGTCCAA
TGTACCCGATGTGTATGTGGGCGGTGATATAGCAAACGCCCACATTCACG
GGCTGGCCCACGATCGCGTGAACATCGGGCATTACCAGCTGGCTCAATAC
CATGGACGAGTGGCGGCCATCAACATGTGCGGCGGGGTAAAGAAGCTGGA
GGCCGTGCCCTTCTTTTTCACCCTCATCTTCGGCAAGGGAATTCGGTATG
CCGGGCATGGCTCTTACAAGGATGTGATCATTGACGGCAGCATGGAGGAC
TTTAAGTTTGTGGCCTACTTCATCAACGAGGCGGATACGGTGACAGCGGT
GGCTTCGTGCGGCCGGGATCCGATTGTGGCCCAGTTTGCCGAGCTAATCT
CGCAGGGCAAGTGCCTCGGTCGTGGCCAGATCGAAGACCCGGCCACCCGT
GAGGACTGGACAAAGAAGCTTGGCCAGCCGTTGCCCCAAGTTCGCGCAAG
CTTTCTAGACCAT
BO09759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 1782 | CG4199-PI | 1..1779 | 17..1795 | 8895 | 100 | Plus |
| CG4199-RH | 1782 | CG4199-PH | 1..1779 | 17..1795 | 8895 | 100 | Plus |
| CG4199-RG | 1782 | CG4199-PG | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 301..2079 | 17..1795 | 8895 | 100 | Plus |
| CG4199-RH | 2521 | CG4199-RH | 466..2244 | 17..1795 | 8895 | 100 | Plus |
| CG4199-RG | 2317 | CG4199-RG | 262..2040 | 17..1795 | 8895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2066712..2068430 | 1795..77 | 8580 | 99.9 | Minus |
| X | 23542271 | X | 2071358..2071426 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:57 has no hits.
BO09759.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:49 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RB | 316..2097 | 17..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:33 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..2040 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:11 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RC | 360..2138 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:05 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..2040 | 17..1797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:05 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2066710..2068423 | 84..1797 | 99 | <- | Minus |
| X | 2071360..2071426 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:33 Download gff for
BO09759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1960743..1962456 | 84..1797 | 99 | <- | Minus |
| arm_X | 1965393..1965459 | 17..83 | 100 | | Minus |
BO09759.pep Sequence
Translation from 16 to 1813
> BO09759.pep
MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD
SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH
YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE
GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ
EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW
QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR
TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE
NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV
DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY
VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF
FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR
DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVRASFLDH
BO09759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PI | 593 | CG4199-PI | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PH | 593 | CG4199-PH | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PG | 593 | CG4199-PG | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PB | 593 | CG4199-PB | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PD | 593 | CG4199-PD | 1..593 | 1..593 | 3076 | 100 | Plus |
