Clone Sequence Records
BO09763.3prime Sequence
922 bp (833 high quality bases) assembled on 2006-01-28
> BO09763.3prime
ATGGTCTAGAAAGCTTGCTTTGGCATCGGCGAAGCCCACACGATCGTTGC
CCATGTCAAACTCGGTGTAGTATTTGCCAATGAAAACGTCACCGAGGATC
CACAAGGGTCCGTTTGGAGGGGGGATGTCCAAGCCCATAAAGCCGGACAG
ACAGATGGTCTTACCCATCTGGGCCACACGGAGAATATAGTCCTTGCCCT
CGAGCTCGAAGGTCTTTCCGCCCAGCACAAACTTGATTACCGGCAATTGG
GGAATGAGATCGCAAGAAACCACATACTGACCACCGATGATGGGAGTTCC
ACCAATCTTCTGGTTAATAGAGGTGGCCTCTTCCAAGGGCGCAGCAATTA
GTGAGGTACCGGTGTCAGCGATCACCTGGCAACCGCCCTTGCACAGCTGC
AAATCGCCAATGGAGGCGGCATCCATCTTGATTTGCCAGTAGGCCTTGCG
GGTAACGGGCAAGTAGGTGAATTCACCAGTGTAGTGGTTGGGATCGGAGC
CGCCAAAGATGATCTCACCGCCCTCGGGCGAGGCGGGATCGCGATTCAGG
TAGAATGAGAACACCGGAGCGGAGATCAAACCCTGTTCGTACATGGCGTA
AAATGGCGGCTTCACCTTGTCCACCGAGATGGAGTTGTAGCCCAGGCCTA
GGATGCCGTCGAACTTGGCAGCTACGAAGACCAGGCCCGGCTCACTGAGC
GCCTCAGCGAATGTCTGATCCTTGATGTCCAGGCCGGCAATGGACACCGT
ATCCGTGGACAGGTATCCGGACAAGCTGCCCGAGCCATACTGGATGGCGA
ACTCAGTGCCGTTCTTGGTGTAGGTCTTCGACTTGNAGGCATCGTACTTG
TTGTGCATCAAACAGGCGATGTTGGTCAGGTGGCACTTCTTGGACGGCAC
CCACAAGTTCGAGGAGCCGGTG
BO09763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1548-PA | 1179 | cathD-RA | 273..1176 | 922..19 | 4501 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-RA | 1396 | CG1548-RA | 376..1279 | 922..19 | 4509 | 99.9 | Minus |
| CG6508-RA | 1379 | CG6508-RA | 418..513 | 796..701 | 195 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7822549..7823194 | 277..922 | 3219 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7822228..7822487 | 19..278 | 1300 | 100 | Plus |
| 2L | 23513712 | 2L | 10819524..10819619 | 796..701 | 195 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:03:49 has no hits.
BO09763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:19 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-PA | 273..1179 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:30 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1548-PA | 273..1179 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:54:37 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 376..1282 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:56 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 376..1282 | 15..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:56 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7822225..7822485 | 15..276 | 99 | <- | Plus |
| 2R | 7822549..7823194 | 277..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:54:37 Download gff for
BO09763.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3709730..3709990 | 15..276 | 99 | <- | Plus |
| arm_2R | 3710054..3710699 | 277..922 | 99 | | Plus |
BO09763.5prime Sequence
873 bp (827 high quality bases) assembled on 2006-01-28
> BO09763.5prime
GAAGTTATCAGTCGACATGCAGAAGGTTGCACTGCTTCTAGTCGCCTTCC
TGGCTGCGGCCGTGGCCCACCCAAATTCGCAGGAGAAGCCCGGATTGCTG
CGCGTACCGCTCCACAAATTTCAGTCGGCCCGCCGGCACTTTGCGGATGT
GGGCACGGAGCTGCAGCAATTGCGCATTAGGTACGGCGGAGGTGATGTGC
CGGAACCGCTGTCCAACTATATGGACGCGCAGTACTATGGGCCCATTGCC
ATTGGCTCGCCACCGCAGAACTTCCGTGTGGTTTTCGACACCGGCTCCTC
GAACTTGTGGGTGCCGTCCAAGAAGTGCCACCTGACCAACATCGCCTGTT
TGATGCACAACAAGTACGATGCCTCCAAGTCGAAGACCTACACCAAGAAC
GGCACTGAGTTCGCCATCCAGTATGGCTCGGGCAGCTTGTCCGGATACCT
GTCCACGGATACGGTGTCCATTGCCGGCCTGGACATCAAGGATCAGACAT
TCGCTGAGGCGCTCAGTGAGCCGGGCCTGGTCTTCGTAGCTGCCAAGTTC
GACGGCATCCTAGGCCTGGGCTACAACTCCATCTCGGTGGACAAGGTGAA
GCCGCCATTTTACGCCATGTACGAACAGGGTTTGATCTCCGCTCCGGTGT
TCTCATTCTACCTGAATCGCGATCCCGCCTCGCCCGAGGGCGGTGAGATC
ATCTTTGGCGGCTCCGATCCCAACCACTACACTGGTGAATTCACCTACTT
GCCCGTTACCCGCAAGGCCTACTGGCAAATCAAGATGGATGCCGCCTCCA
TTGGCGATTTGCAGCTGTGCAAGGGCGGTTGGCAGGTGATCGCTGACACC
GGTACCTCACTAATTGCTGCGCC
BO09763.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1548-PA | 1179 | cathD-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-RA | 1396 | CG1548-RA | 104..960 | 17..873 | 4270 | 99.9 | Plus |
| CG6508-RA | 1379 | CG6508-RA | 418..513 | 415..510 | 195 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7822610..7823466 | 873..17 | 4270 | 99.9 | Minus |
| 2L | 23513712 | 2L | 10819524..10819619 | 415..510 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:17:21 has no hits.
BO09763.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:20 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:31 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1548-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:50 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 93..960 | 6..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:17 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 93..960 | 6..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:17 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7822610..7823477 | 6..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:50 Download gff for
BO09763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3710115..3710982 | 6..873 | 99 | | Minus |
BO09763.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631567
> BO09763.complete
GAAGTTATCAGTCGACATGCAGAAGGTTGCACTGCTTCTAGTCGCCTTCC
TGGCTGCGGCCGTGGCCCACCCAAATTCGCAGGAGAAGCCCGGATTGCTG
CGCGTACCGCTCCACAAATTTCAGTCGGCCCGCCGGCACTTTGCGGATGT
GGGCACGGAGCTGCAGCAATTGCGCATTAGGTACGGCGGAGGTGATGTGC
CGGAACCGCTGTCCAACTATATGGACGCGCAGTACTATGGGCCCATTGCC
ATTGGCTCGCCACCGCAGAACTTCCGTGTGGTTTTCGACACCGGCTCCTC
GAACTTGTGGGTGCCGTCCAAGAAGTGCCACCTGACCAACATCGCCTGTT
TGATGCACAACAAGTACGATGCCTCCAAGTCGAAGACCTACACCAAGAAC
GGCACTGAGTTCGCCATCCAGTATGGCTCGGGCAGCTTGTCCGGATACCT
GTCCACGGATACGGTGTCCATTGCCGGCCTGGACATCAAGGATCAGACAT
TCGCTGAGGCGCTCAGTGAGCCGGGCCTGGTCTTCGTAGCTGCCAAGTTC
GACGGCATCCTAGGCCTGGGCTACAACTCCATCTCGGTGGACAAGGTGAA
GCCGCCATTTTACGCCATGTACGAACAGGGTTTGATCTCCGCTCCGGTGT
TCTCATTCTACCTGAATCGCGATCCCGCCTCGCCCGAGGGCGGTGAGATC
ATCTTTGGCGGCTCCGATCCCAACCACTACACTGGTGAATTCACCTACTT
GCCCGTTACCCGCAAGGCCTACTGGCAAATCAAGATGGATGCCGCCTCCA
TTGGCGATTTGCAGCTGTGCAAGGGCGGTTGCCAGGTGATCGCTGACACC
GGTACCTCACTAATTGCTGCGCCCTTGGAAGAGGCCACCTCTATTAACCA
GAAGATTGGTGGAACTCCCATCATCGGTGGTCAGTATGTGGTTTCTTGCG
ATCTCATTCCCCAATTGCCGGTAATCAAGTTTGTGCTGGGCGGAAAGACC
TTCGAGCTCGAGGGCAAGGACTATATTCTCCGTGTGGCCCAGATGGGTAA
GACCATCTGTCTGTCCGGCTTTATGGGCTTGGACATCCCCCCTCCAAACG
GACCCTTGTGGATCCTCGGTGACGTTTTCATTGGCAAATACTACACCGAG
TTTGACATGGGCAACGATCGTGTGGGCTTCGCCGATGCCAAAGCAAGCTT
TCTAGACCAT
BO09763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-RA | 1179 | CG1548-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG6508-RA | 1272 | CG6508-PA | 402..497 | 415..510 | 195 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-RA | 1396 | CG1548-RA | 104..1279 | 17..1192 | 5880 | 100 | Plus |
| CG6508-RA | 1379 | CG6508-RA | 418..513 | 415..510 | 195 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7822549..7823466 | 934..17 | 4590 | 100 | Minus |
| 2R | 25286936 | 2R | 7822228..7822487 | 1192..933 | 1300 | 100 | Minus |
| 2L | 23513712 | 2L | 10819524..10819619 | 415..510 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:01:26 has no hits.
BO09763.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:39 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 1..1179 | 17..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:45 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 92..1281 | 6..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:10 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 104..1279 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:39 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 92..1281 | 6..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:07 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 104..1279 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:07 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7822226..7822485 | 935..1194 | 99 | <- | Minus |
| 2R | 7822549..7823466 | 17..934 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:10 Download gff for
BO09763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3709731..3709990 | 935..1194 | 99 | <- | Minus |
| arm_2R | 3710054..3710971 | 17..934 | 100 | | Minus |
BO09763.pep Sequence
Translation from 16 to 1210
> BO09763.pep
MQKVALLLVAFLAAAVAHPNSQEKPGLLRVPLHKFQSARRHFADVGTELQ
QLRIRYGGGDVPEPLSNYMDAQYYGPIAIGSPPQNFRVVFDTGSSNLWVP
SKKCHLTNIACLMHNKYDASKSKTYTKNGTEFAIQYGSGSLSGYLSTDTV
SIAGLDIKDQTFAEALSEPGLVFVAAKFDGILGLGYNSISVDKVKPPFYA
MYEQGLISAPVFSFYLNRDPASPEGGEIIFGGSDPNHYTGEFTYLPVTRK
AYWQIKMDAASIGDLQLCKGGCQVIADTGTSLIAAPLEEATSINQKIGGT
PIIGGQYVVSCDLIPQLPVIKFVLGGKTFELEGKDYILRVAQMGKTICLS
GFMGLDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFADAKASFLDH
BO09763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-PA | 392 | CG1548-PA | 1..392 | 1..392 | 2061 | 100 | Plus |
| CG10104-PA | 404 | CG10104-PA | 5..404 | 4..393 | 1164 | 55.2 | Plus |
| CG17134-PA | 391 | CG17134-PA | 4..386 | 7..389 | 884 | 47.3 | Plus |
| Bace-PB | 372 | CG13095-PB | 8..369 | 6..389 | 853 | 47.4 | Plus |
| Bace-PA | 372 | CG13095-PA | 8..369 | 6..389 | 853 | 47.4 | Plus |
