Clone Sequence Records
BO09765.3prime Sequence
880 bp (803 high quality bases) assembled on 2006-01-28
> BO09765.3prime
ATGGTCTAGAAAGCTTGCCTCACCCTTCAGCTCGATGCGGGCGGTGGCCT
GGACGCTGCCCAAAGAATTGCGAGCCTCGCAGCGATACGTGCCGGCAGAG
AGCTGGTTGGGCTGCAGCAGGATGAGGCTGCCATTGGCCTGCAGTTGGAG
GCTGGGTGTAGACTGCAAGAGTTGGCGGCCATTGACGAACCATTGTATGT
CCGGCTGTGGCCAGCCGGAGGCGGCGCAATCGAGCAGCACGTGTCCAGAG
CCGTGAAGGGCCACAATTTGGTCGTGCGGCTGGTGGGTAAAGTGCGGTGG
CGATGGCAATGGCGATGGCAGTGGCGTTGCTCCGTGCATGGGTGTTCCGG
CATCCGCCCACACCTGATTGCTGCGGGCGTCGATGGGCGAATCGAGTGGG
TGGTTACCGCCATTAACTACCAGGCGAACGGGTTGGGAACGCAGTGCGCC
CATCTCGTTGCGAGCGATGCACTGGTAGATGCCCATGTCGCTGGTGTCCG
CGCTGCGGATGAGCAGACTGCCGCTGGGCAGGATCTCCGCCTGTGCCTGC
TCCTCCAAGCCCAACTCCTGCGTGTTGTGCATCCACGTGATCTGGGGGCG
GGGCAGGCCGGTGACCTCGCAGCTCAGCTCCACCTGCTCCCCGGCAGCGA
CTTGGGCATCTTGTGGTGCCACCAGGAACTGCGGCTTGGCGCATTTGAAG
TGATGCTCGCCCAGGCTGGAAAAGCCCTGGTTTTGGAGCATCTGGGGAGC
GGCACAGGTGAGCGAAATGGACACCAACTGGCGCTGCACATCCAGGTGCC
AGCGACGCCAGAGCGAGTAGACGCCACAATTGCAATCGATGGCGTTGCCG
TCCAGTCGCAGGCGCTTCAGGTTGTTCAGT
BO09765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12002-PB | 1374 | Pxn-RB | 510..1371 | 880..19 | 4310 | 100 | Minus |
| CG12002-PA | 4584 | Pxn-RA | 510..1366 | 880..24 | 4285 | 100 | Minus |
| CG12002-PC | 4584 | Pxn-RC | 510..1366 | 880..24 | 4285 | 100 | Minus |
| CG12002-PD | 4584 | Pxn-RD | 510..1366 | 880..24 | 4285 | 100 | Minus |
| CG12002-PE | 4584 | Pxn-RE | 510..1366 | 880..24 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 2492 | CG12002-RB | 877..1738 | 880..19 | 4310 | 100 | Minus |
| Pxn-RE | 4820 | CG12002-RE | 571..1427 | 880..24 | 4285 | 100 | Minus |
| Pxn-RD | 5196 | CG12002-RD | 947..1803 | 880..24 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2610489..2611160 | 19..690 | 3360 | 100 | Plus |
| 3L | 28110227 | 3L | 2611316..2611506 | 690..880 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:40:16 has no hits.
BO09765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:25 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-PB | 510..1374 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:36 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12002-PB | 510..1374 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:41 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 885..1749 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:33 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 877..1741 | 15..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:33 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2610485..2611159 | 15..689 | 99 | <- | Plus |
| 3L | 2611316..2611506 | 690..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:41 Download gff for
BO09765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2610485..2611159 | 15..689 | 99 | <- | Plus |
| arm_3L | 2611316..2611506 | 690..880 | 100 | | Plus |
BO09765.5prime Sequence
906 bp (785 high quality bases) assembled on 2006-01-28
> BO09765.5prime
GAAGTTATCAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCG
GCCTGCTGCTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCT
GGATGCACCTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTC
CGCCGTGCCGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCA
ATCACATCGAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTG
ACTACGCTTTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGC
TCTCAATGGACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGC
TAAGCCGCTTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCG
ATTTTCCTGGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGA
CAACTTGCCGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCC
AACTGCCTGTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGA
CTGGACGGCAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCG
TCGCTGGCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCT
GTGCCGCTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAG
CATCACTTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGC
CCAAGTCGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCC
TGCCCCGCCCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTG
GAGGAGCAAGCACAGGCGGAGATCCTGCCCAGCGGCAGTCTGCTCATCCG
CAGCGC
BO09765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12002-PA | 4584 | Pxn-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
| CG12002-PC | 4584 | Pxn-RC | 1..890 | 17..906 | 4425 | 99.8 | Plus |
| CG12002-PD | 4584 | Pxn-RD | 1..890 | 17..906 | 4425 | 99.8 | Plus |
| CG12002-PE | 4584 | Pxn-RE | 1..890 | 17..906 | 4425 | 99.8 | Plus |
| CG12002-PB | 1374 | Pxn-RB | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 2492 | CG12002-RB | 363..1257 | 12..906 | 4445 | 99.8 | Plus |
| Pxn-RE | 4820 | CG12002-RE | 57..951 | 12..906 | 4445 | 99.8 | Plus |
| Pxn-RD | 5196 | CG12002-RD | 433..1327 | 12..906 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2611316..2611557 | 716..475 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 2611788..2612003 | 402..187 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 2610970..2611160 | 906..716 | 940 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2629141..2629315 | 186..12 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2611638..2611710 | 475..403 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:17:00 has no hits.
BO09765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:26 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-PB | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:37 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12002-PB | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:12 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 441..1335 | 12..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:17 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 433..1327 | 12..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:17 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
| 3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
| 3L | 2610970..2611159 | 717..906 | 99 | <- | Minus |
| 3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| 3L | 2629141..2629315 | 12..186 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:12 Download gff for
BO09765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| arm_3L | 2629141..2629315 | 12..186 | 99 | | Minus |
| arm_3L | 2610970..2611159 | 717..906 | 99 | <- | Minus |
| arm_3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
| arm_3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
BO09765.complete Sequence
1405 bp (1405 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631568
> BO09765.complete
GAAGTTATCAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCG
GCCTGCTGCTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCT
GGATGCACCTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTC
CGCCGTGCCGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCA
ATCACATCGAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTG
ACTACGCTTTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGC
TCTCAATGGACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGC
TAAGCCGCTTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCG
ATTTTCCTGGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGA
CAACTTGCCGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCC
AACTGCCTGTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGA
CTGGACGGCAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCG
TCGCTGGCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCT
GTGCCGCTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAG
CATCACTTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGC
CCAAGTCGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCC
TGCCCCGCCCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTG
GAGGAGCAGGCACAGGCGGAGATCCTGCCCAGCGGCAGTCTGCTCATCCG
CAGCGCGGACACCAGCGACATGGGCATCTACCAGTGCATCGCTCGCAACG
AGATGGGCGCACTGCGTTCCCAACCCGTTCGCCTGGTAGTTAATGGCGGT
AACCACCCACTCGATTCGCCCATCGACGCCCGCAGCAATCAGGTGTGGGC
GGATGCCGGAACACCCATGCACGGAGCAACGCCACTGCCATCGCCATTGC
CATCGCCACCGCACTTTACCCACCAGCCGCACGACCAAATTGTGGCCCTT
CACGGCTCTGGACACGTGCTGCTCGATTGCGCCGCCTCCGGCTGGCCACA
GCCGGACATACAATGGTTCGTCAATGGCCGCCAACTCTTGCAGTCTACAC
CCAGCCTCCAACTGCAGGCCAATGGCAGCCTCATCCTGCTGCAGCCCAAC
CAGCTCTCTGCCGGCACGTATCGCTGCGAGGCTCGCAATTCTTTGGGCAG
CGTCCAGGCCACCGCCCGCATCGAGCTGAAGGGTGAGGCAAGCTTTCTAG
ACCAT
BO09765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 1374 | CG12002-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| Pxn-RE | 4584 | CG12002-PE | 1..1366 | 17..1382 | 6830 | 100 | Plus |
| Pxn-RD | 4584 | CG12002-PD | 1..1366 | 17..1382 | 6830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 2492 | CG12002-RB | 363..1738 | 12..1387 | 6865 | 99.9 | Plus |
| Pxn-RE | 4820 | CG12002-RE | 57..1427 | 12..1382 | 6840 | 99.9 | Plus |
| Pxn-RD | 5196 | CG12002-RD | 433..1803 | 12..1382 | 6840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2610489..2611160 | 1387..716 | 3360 | 100 | Minus |
| 3L | 28110227 | 3L | 2611316..2611557 | 716..475 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 2611788..2612003 | 402..187 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 2629141..2629315 | 186..12 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2611638..2611710 | 475..403 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:25 has no hits.
BO09765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:29 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 1..1374 | 17..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:24 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 376..1746 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:47 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 376..1746 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:29 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 371..1749 | 12..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:06 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RB | 368..1738 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:06 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
| 3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| 3L | 2629141..2629310 | 17..186 | 100 | | Minus |
| 3L | 2610487..2611159 | 717..1389 | 99 | <- | Minus |
| 3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:47 Download gff for
BO09765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2610487..2611159 | 717..1389 | 99 | <- | Minus |
| arm_3L | 2611316..2611557 | 475..716 | 100 | <- | Minus |
| arm_3L | 2611639..2611710 | 403..474 | 100 | <- | Minus |
| arm_3L | 2611788..2612003 | 187..402 | 100 | <- | Minus |
| arm_3L | 2629141..2629310 | 17..186 | 100 | | Minus |
BO09765.pep Sequence
Translation from 16 to 1405
> BO09765.pep
MRFMLLMLQLLGLLLLLAGGVQSVYCPAGCTCLERTVRCIRAKLSAVPKL
PQDTQTLDLRFNHIEELPANAFSGLAQLTTLFLNDNELAYLQDGALNGLT
ALRFVYLNNNRLSRLPATIFQRMPRLEAIFLENNDIWQLPAGLFDNLPRL
NRLIMYNNKLTQLPVDGFNRLNNLKRLRLDGNAIDCNCGVYSLWRRWHLD
VQRQLVSISLTCAAPQMLQNQGFSSLGEHHFKCAKPQFLVAPQDAQVAAG
EQVELSCEVTGLPRPQITWMHNTQELGLEEQAQAEILPSGSLLIRSADTS
DMGIYQCIARNEMGALRSQPVRLVVNGGNHPLDSPIDARSNQVWADAGTP
MHGATPLPSPLPSPPHFTHQPHDQIVALHGSGHVLLDCAASGWPQPDIQW
FVNGRQLLQSTPSLQLQANGSLILLQPNQLSAGTYRCEARNSLGSVQATA
RIELKGEASFLDH
BO09765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-PB | 457 | CG12002-PB | 1..457 | 1..457 | 2401 | 100 | Plus |
| Pxn-PE | 1527 | CG12002-PE | 1..455 | 1..455 | 2390 | 100 | Plus |
| Pxn-PD | 1527 | CG12002-PD | 1..455 | 1..455 | 2390 | 100 | Plus |
| Pxn-PC | 1527 | CG12002-PC | 1..455 | 1..455 | 2390 | 100 | Plus |
| Pxn-PA | 1527 | CG12002-PA | 1..455 | 1..455 | 2390 | 100 | Plus |
