Clone Sequence Records
BO09770.3prime Sequence
860 bp (835 high quality bases) assembled on 2006-01-28
> BO09770.3prime
ATGGTCTAGAAAGCTTGCGTTCGATTCGGGCTTGACATTGCGTCGCAGGA
TGGCCGCTGCGAGGTCCTGCTTCATGGCCGCCTGCTGGCGCTGATCGGCC
AGTGATTGTGTGCTCCTTAGTCCGTTCACGATGTCCTTGGTCTTGCCAAA
GTAGATCTCGTTCAGGGTGTTCCTGATCTTGTTCTCCATCTCCTCGACCA
TCTTGCCAATGTTGGCGATGTGCGGCGACGACTCGCTGACGTTGGCGTCC
TGCTCCTGCTGCCGGGTGAGGGATCCGCCCAGATTCATGGTTCCCGAACC
CTGTTTGTTGGTCTGCAGCCAGAGCATTGCCGTGGAGGTGAGCTTGTAGT
GGGCCGTCCTGCCGGTGGTCTTCTCCTGTACCTCGACCACATGGATGGAG
TCCCAGCAGCCGCGGATCATCTTGCTGCCATCTCCCGCCTTTTTGATCAG
TATAACGGCGGCAAACCCGTGATCCAGATCCCATAGGTAGACGGAGGAGA
CGCCTCCCTCGTAGTACATCTCCCTGTACTGATCGAAGGCATAGTTCGCC
TCGATTTCCAGTTTGCGCAGTCGTTCCGAGGGCATTTGGCCATCCTCCAG
CGGCGGATAGTAGGAGTTCGACCAGGGCGATCTGTAGGAGTCCCCATCCC
GGTTATAGTCGCACAGCAGATAGTCCTTGCCGTGCTCCTTGTCCTTGGCG
ATCTTCAGCGGCTGGTCCACGGAGGAGAGCAAGTCCTCGCAGAGATCCGG
TGCCAAGTCTATCAGATCAATAAGGTTCTTCTCGATCTGCTGGGGCGGCA
GCCTCCGCATCAGATCCAAAGCACAGTCCATCTGCATTTCCGACATGTCG
ACTGATAACT
BO09770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17158-PA | 831 | cpb-RA | 1..828 | 846..19 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..975 | 846..19 | 4125 | 99.9 | Minus |
| cpb-RA | 1591 | CG17158-RA | 211..1038 | 846..19 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706224 | 844..19 | 4115 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:21 has no hits.
BO09770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:33 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-PA | 1..831 | 16..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:47 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17158-PA | 1..831 | 16..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:47 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 19..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:50 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 19..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:50 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705391..1706224 | 19..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:47 Download gff for
BO09770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705391..1706224 | 19..855 | 99 | | Minus |
BO09770.5prime Sequence
820 bp (792 high quality bases) assembled on 2006-01-28
> BO09770.5prime
GAAGTTATCAGTCGACATGTCGGAAATGCAGATGGACTGTGCTTTGGATC
TGATGCGGAGGCTGCCGCCCCAGCAGATCGAGAAGAACCTTATTGATCTG
ATAGACTTGGCACCGGATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCA
GCCGCTGAAGATCGCCAAGGACAAGGAGCACGGCAAGGACTATCTGCTGT
GCGACTATAACCGGGATGGGGACTCCTACAGATCGCCCTGGTCGAACTCC
TACTATCCGCCGCTGGAGGATGGCCAAATGCCCTCGGAACGACTGCGCAA
ACTGGAAATCGAGGCGAACTATGCCTTCGATCAGTACAGGGAGATGTACT
ACGAGGGAGGCGTCTCCTCCGTCTACCTATGGGATCTGGATCACGGGTTT
GCCGCCGTTATACTGATCAAAAAGGCGGGAGATGGCAGCAAGATGATCCG
CGGCTGCTGGGACTCCATCCATGTGGTCGAGGTACAGGAGAAGACCACCG
GCAGGACGGCCCACTACAAGCTCACCTCCACGGCAATGCTCTGGCTGCAG
ACCAACAAACAGGGTTCGGGAACCATGAATCTGGGCGGATCCCTCACCCG
GCAGCAGGAGCAGGACGCCAACGTCAGCGAGTCGTCGCCGCACATCGCCA
ACATTGGCAAGATGGTCGAGGAGATGGAGAACAAGATCAGGAACACCCTG
AACGAGATCTACTTTGGCAAGACCAAGGACATCGTGAACGGACTAAGGAG
CACACAATCACTGGCCGATCAGCGCCAGCAGGCGGCCATGAAGCAGGACC
TCGCAGCGGCCATCCTGCGA
BO09770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17158-PA | 831 | cpb-RA | 1..804 | 17..820 | 3995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..951 | 17..820 | 4005 | 99.9 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1014 | 17..820 | 4005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706200 | 19..820 | 3995 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:17:09 has no hits.
BO09770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:35 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:27:48 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17158-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:14 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1013 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:44 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1013 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:44 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705391..1706199 | 8..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:14 Download gff for
BO09770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705391..1706199 | 8..819 | 99 | | Plus |
BO09770.complete Sequence
862 bp (862 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631569
> BO09770.complete
GAAGTTATCAGTCGACATGTCGGAAATGCAGATGGACTGTGCTTTGGATC
TGATGCGGAGGCTGCCGCCCCAGCAGATCGAGAAGAACCTTATTGATCTG
ATAGACTTGGCACCGGATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCA
GCCGCTGAAGATCGCCAAGGACAAGGAGCACGGCAAGGACTATCTGCTGT
GCGACTATAACCGGGATGGGGACTCCTACAGATCGCCCTGGTCGAACTCC
TACTATCCGCCGCTGGAGGATGGCCAAATGCCCTCGGAACGACTGCGCAA
ACTGGAAATCGAGGCGAACTATGCCTTCGATCAGTACAGGGAGATGTACT
ACGAGGGAGGCGTCTCCTCCGTCTACCTATGGGATCTGGATCACGGGTTT
GCCGCCGTTATACTGATCAAAAAGGCGGGAGATGGCAGCAAGATGATCCG
CGGCTGCTGGGACTCCATCCATGTGGTCGAGGTACAGGAGAAGACCACCG
GCAGGACGGCCCACTACAAGCTCACCTCCACGGCAATGCTCTGGCTGCAG
ACCAACAAACAGGGTTCGGGAACCATGAATCTGGGCGGATCCCTCACCCG
GCAGCAGGAGCAGGACGCCAACGTCAGCGAGTCGTCGCCGCACATCGCCA
ACATTGGCAAGATGGTCGAGGAGATGGAGAACAAGATCAGGAACACCCTG
AACGAGATCTACTTTGGCAAGACCAAGGACATCGTGAACGGACTAAGGAG
CACACAATCACTGGCCGATCAGCGCCAGCAGGCGGCCATGAAGCAGGACC
TCGCAGCGGCCATCCTGCGACGCAATGTCAAGCCCGAATCGAACGCAAGC
TTTCTAGACCAT
BO09770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 831 | CG17158-PB | 1..828 | 17..844 | 4125 | 99.9 | Plus |
| cpb-RA | 831 | CG17158-PA | 1..828 | 17..844 | 4125 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..975 | 17..844 | 4125 | 99.9 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1038 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706224 | 19..844 | 4115 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:04:07 has no hits.
BO09770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:30 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:32 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 209..1036 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:40 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:30 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 209..1036 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:30 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1038 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:30 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705398..1706224 | 17..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:40 Download gff for
BO09770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705398..1706224 | 17..846 | 99 | | Plus |
BO09770.pep Sequence
Translation from 16 to 862
> BO09770.pep
MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIA
KDKEHGKDYLLCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEA
NYAFDQYREMYYEGGVSSVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDS
IHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQD
ANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQSLA
DQRQQAAMKQDLAAAILRRNVKPESNASFLDH
BO09770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-PB | 276 | CG17158-PB | 1..276 | 1..276 | 1442 | 100 | Plus |
| cpb-PA | 276 | CG17158-PA | 1..276 | 1..276 | 1442 | 100 | Plus |
