Clone BO09780 Report

Search the DGRC for BO09780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1907-RA
Protein status:BO09780.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO09780.3prime Sequence

888 bp (864 high quality bases) assembled on 2006-01-28

> BO09780.3prime
ATGGTCTAGAAAGCTTGCCAGGCCAGTGCTCTTGTTCGAGCCCAGGACGT
ACTTGTTGTAGCCCTGGTTAAGCTGCTCCAGAATAATGAAGGTCAGCACG
GTGTGGGGACCCAGGCGGCAGTAGTAGGGCGTGAATCCCTTCCACAGCGC
AAAGACTCCCTCCTGGCGGGCCACGCGCAGCAGGACGTCGGCGGTGCCGC
GGTACTCCGGCTTGCCATCGACCATCTTCATGTTCTGGATACGGGTCTTG
GCAATGTCCAGCGGCATGGAAGTGATGGTGGTCAGTAGACCGCTCAGCAT
GCTGGCGCAGAAGTGCAGCTTGATGCCCTCCTCCATCTGAAGGGGTCCGT
GGCGGAAGTAGGTCTTAAACTGCGAGTAGCTGGCCAGTTGGGTCATGTTC
ACGACCATGGCGCGACCCACCGTGGGCAGACTGCCTCTCCACAGAGCCGT
AAGTCCCTCCTCCCTGGTGATCCTAGCCAGGGCGTTGGCCACATTAGTGT
AGTTCCTCCGCTCAGCCACCGGCAACCTGCCGTCGGAAGTCATGCGCACC
AGGGCCACTTCCGCGGGCGTGCCAATAAAGGCGCCACATGCTCCGGCGAT
CGTGCCCATGGCCATGCTGTCCGTGATGCCGGGACTCCTCTGGAACTTCT
CCCTGAACAGGTCGTTCAGATACGTGTACATGCCCAATCTTCCCGTGGTG
TAGGTTGCCTGTCTCAGCAGAGCAGCTCCGATGCCCTGGTAAAGGGCCAG
AGGTCCTTCCTTGCTCACGATGGTCTGGATGCAGTGCAAGGAGCTGCGGT
ACTCCTTCTTGCCACTGCCCGCTCCAGAAATCTGCATGCGGGTCTTGACC
AAATCTAGCGGCTGCACCACCATGGTGGCTCCCATTCC

BO09780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 954 CG1907-RA 82..951 888..19 4075 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 548..1417 888..19 4185 98.7 Minus
CG18418-RA 1142 CG18418-RA 745..828 285..202 180 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619721..29620552 850..19 4010 98.8 Minus
3R 32079331 3R 29619612..29619652 888..848 190 97.6 Minus
Blast to na_te.dros performed on 2015-02-06 13:15:28 has no hits.

BO09780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:52 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 82..954 15..888 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:09 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 82..954 15..888 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:09:46 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 548..1420 15..888 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:14 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 548..1420 15..888 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:14 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29619612..29619650 850..888 97 -> Minus
3R 29619722..29620555 15..849 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:09:46 Download gff for BO09780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445334..25445372 850..888 97 -> Minus
arm_3R 25445444..25446277 15..849 98   Minus

BO09780.5prime Sequence

915 bp (812 high quality bases) assembled on 2006-01-28

> BO09780.5prime
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACTTNCAT
TATTCTGGAGCAGCT

BO09780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 954 CG1907-RA 1..899 17..915 4176 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 467..1365 17..915 4304 98.6 Plus
CG18418-RA 1142 CG18418-RA 745..828 701..784 180 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619721..29620500 136..915 3724 98.5 Plus
3R 32079331 3R 29619531..29619652 17..138 595 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:44:48 has no hits.

BO09780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:53 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 1..899 17..915 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:10 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 1..899 17..915 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:52 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 464..1365 14..915 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:20 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 464..1365 14..915 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:20 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29619528..29619650 14..136 98 -> Plus
3R 29619722..29620500 137..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:52 Download gff for BO09780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445250..25445372 14..136 98 -> Plus
arm_3R 25445444..25446222 137..915 98   Plus

BO09780.complete Sequence

985 bp (985 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631570

> BO09780.complete
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
TATTCTGGAGCAGCTTAACCAGGGCTACAACAAGTACGTCCTGGGCTCGA
ACAAGAGCACTGGCCTGGCAAGCTTTCTAGACCAT

BO09780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 954 CG1907-PA 1..951 17..967 4590 98.8 Plus
CG18418-RA 936 CG18418-PA 664..747 701..784 180 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 467..1417 17..967 4590 98.8 Plus
CG18418-RA 1142 CG18418-RA 745..828 701..784 180 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619721..29620552 136..967 4010 98.8 Plus
3R 32079331 3R 29619531..29619652 17..138 595 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 01:29:55 has no hits.

BO09780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:33 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 1..954 17..971 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:37 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 495..1451 14..971 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:26 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 467..1417 17..969 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:33 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 495..1451 14..971 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:45 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 467..1417 17..969 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:45 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29619531..29619650 17..136 99 -> Plus
3R 29619722..29620552 137..969 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:26 Download gff for BO09780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445253..25445372 17..136 99 -> Plus
arm_3R 25445444..25446274 137..969 98   Plus

BO09780.pep Sequence

Translation from 16 to 985

> BO09780.pep
MSATSVQEAPKKAVATNAIKFLFGGLSGMGATMVVQPLDLVKTRMQISGA
GSGKKEYRSSLHCIQTIVSKEGPLALYQGIGAALLRQATYTTGRLGMYTY
LNDLFREKFQRSPGITDSMAMGTIAGACGAFIGTPAEVALVRMTSDGRLP
VAERRNYTNVANALARITREEGLTALWRGSLPTVGRAMVVNMTQLASYSQ
FKTYFRHGPLQMEEGIKLHFCASMLSGLLTTITSMPLDIAKTRIQNMKMV
DGKPEYRGTADVLLRVARQEGVFALWKGFTPYYCRLGPHTVLTFIILEQL
NQGYNKYVLGSNKSTGLASFLDH

BO09780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 317 CG1907-PA 1..317 1..317 1619 100 Plus
CG18418-PA 311 CG18418-PA 9..307 11..314 878 56.9 Plus
CG7514-PA 301 CG7514-PA 16..301 21..317 841 56.2 Plus
Dic1-PC 280 CG8790-PC 10..272 21..300 457 35 Plus
Dic1-PA 280 CG8790-PA 10..272 21..300 457 35 Plus