Clone Sequence Records
BO09780.3prime Sequence
888 bp (864 high quality bases) assembled on 2006-01-28
> BO09780.3prime
ATGGTCTAGAAAGCTTGCCAGGCCAGTGCTCTTGTTCGAGCCCAGGACGT
ACTTGTTGTAGCCCTGGTTAAGCTGCTCCAGAATAATGAAGGTCAGCACG
GTGTGGGGACCCAGGCGGCAGTAGTAGGGCGTGAATCCCTTCCACAGCGC
AAAGACTCCCTCCTGGCGGGCCACGCGCAGCAGGACGTCGGCGGTGCCGC
GGTACTCCGGCTTGCCATCGACCATCTTCATGTTCTGGATACGGGTCTTG
GCAATGTCCAGCGGCATGGAAGTGATGGTGGTCAGTAGACCGCTCAGCAT
GCTGGCGCAGAAGTGCAGCTTGATGCCCTCCTCCATCTGAAGGGGTCCGT
GGCGGAAGTAGGTCTTAAACTGCGAGTAGCTGGCCAGTTGGGTCATGTTC
ACGACCATGGCGCGACCCACCGTGGGCAGACTGCCTCTCCACAGAGCCGT
AAGTCCCTCCTCCCTGGTGATCCTAGCCAGGGCGTTGGCCACATTAGTGT
AGTTCCTCCGCTCAGCCACCGGCAACCTGCCGTCGGAAGTCATGCGCACC
AGGGCCACTTCCGCGGGCGTGCCAATAAAGGCGCCACATGCTCCGGCGAT
CGTGCCCATGGCCATGCTGTCCGTGATGCCGGGACTCCTCTGGAACTTCT
CCCTGAACAGGTCGTTCAGATACGTGTACATGCCCAATCTTCCCGTGGTG
TAGGTTGCCTGTCTCAGCAGAGCAGCTCCGATGCCCTGGTAAAGGGCCAG
AGGTCCTTCCTTGCTCACGATGGTCTGGATGCAGTGCAAGGAGCTGCGGT
ACTCCTTCTTGCCACTGCCCGCTCCAGAAATCTGCATGCGGGTCTTGACC
AAATCTAGCGGCTGCACCACCATGGTGGCTCCCATTCC
BO09780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 954 | CG1907-RA | 82..951 | 888..19 | 4075 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 548..1417 | 888..19 | 4185 | 98.7 | Minus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 285..202 | 180 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619721..29620552 | 850..19 | 4010 | 98.8 | Minus |
3R | 32079331 | 3R | 29619612..29619652 | 888..848 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:15:28 has no hits.
BO09780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:52 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 82..954 | 15..888 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:09 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 82..954 | 15..888 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:09:46 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 548..1420 | 15..888 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:14 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 548..1420 | 15..888 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:14 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619612..29619650 | 850..888 | 97 | -> | Minus |
3R | 29619722..29620555 | 15..849 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:09:46 Download gff for
BO09780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445334..25445372 | 850..888 | 97 | -> | Minus |
arm_3R | 25445444..25446277 | 15..849 | 98 | | Minus |
BO09780.5prime Sequence
915 bp (812 high quality bases) assembled on 2006-01-28
> BO09780.5prime
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACTTNCAT
TATTCTGGAGCAGCT
BO09780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 954 | CG1907-RA | 1..899 | 17..915 | 4176 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 467..1365 | 17..915 | 4304 | 98.6 | Plus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 701..784 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619721..29620500 | 136..915 | 3724 | 98.5 | Plus |
3R | 32079331 | 3R | 29619531..29619652 | 17..138 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:44:48 has no hits.
BO09780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:20:53 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 1..899 | 17..915 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:10 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 1..899 | 17..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:52 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 464..1365 | 14..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:20 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 464..1365 | 14..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:20 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619528..29619650 | 14..136 | 98 | -> | Plus |
3R | 29619722..29620500 | 137..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:52 Download gff for
BO09780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445250..25445372 | 14..136 | 98 | -> | Plus |
arm_3R | 25445444..25446222 | 137..915 | 98 | | Plus |
BO09780.complete Sequence
985 bp (985 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631570
> BO09780.complete
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
TATTCTGGAGCAGCTTAACCAGGGCTACAACAAGTACGTCCTGGGCTCGA
ACAAGAGCACTGGCCTGGCAAGCTTTCTAGACCAT
BO09780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 954 | CG1907-PA | 1..951 | 17..967 | 4590 | 98.8 | Plus |
CG18418-RA | 936 | CG18418-PA | 664..747 | 701..784 | 180 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 467..1417 | 17..967 | 4590 | 98.8 | Plus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 701..784 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619721..29620552 | 136..967 | 4010 | 98.8 | Plus |
3R | 32079331 | 3R | 29619531..29619652 | 17..138 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:29:55 has no hits.
BO09780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:33 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 1..954 | 17..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:37 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 495..1451 | 14..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:26 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 467..1417 | 17..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:33 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 495..1451 | 14..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:45 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 467..1417 | 17..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:45 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619531..29619650 | 17..136 | 99 | -> | Plus |
3R | 29619722..29620552 | 137..969 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:26 Download gff for
BO09780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445253..25445372 | 17..136 | 99 | -> | Plus |
arm_3R | 25445444..25446274 | 137..969 | 98 | | Plus |
BO09780.pep Sequence
Translation from 16 to 985
> BO09780.pep
MSATSVQEAPKKAVATNAIKFLFGGLSGMGATMVVQPLDLVKTRMQISGA
GSGKKEYRSSLHCIQTIVSKEGPLALYQGIGAALLRQATYTTGRLGMYTY
LNDLFREKFQRSPGITDSMAMGTIAGACGAFIGTPAEVALVRMTSDGRLP
VAERRNYTNVANALARITREEGLTALWRGSLPTVGRAMVVNMTQLASYSQ
FKTYFRHGPLQMEEGIKLHFCASMLSGLLTTITSMPLDIAKTRIQNMKMV
DGKPEYRGTADVLLRVARQEGVFALWKGFTPYYCRLGPHTVLTFIILEQL
NQGYNKYVLGSNKSTGLASFLDH
BO09780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 317 | CG1907-PA | 1..317 | 1..317 | 1619 | 100 | Plus |
CG18418-PA | 311 | CG18418-PA | 9..307 | 11..314 | 878 | 56.9 | Plus |
CG7514-PA | 301 | CG7514-PA | 16..301 | 21..317 | 841 | 56.2 | Plus |
Dic1-PC | 280 | CG8790-PC | 10..272 | 21..300 | 457 | 35 | Plus |
Dic1-PA | 280 | CG8790-PA | 10..272 | 21..300 | 457 | 35 | Plus |