Clone BO09784 Report

Search the DGRC for BO09784

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG3608-RA
Protein status:BO09784.pep: validated full length
Sequenced Size:1588

Clone Sequence Records

BO09784.3prime Sequence

887 bp (819 high quality bases) assembled on 2006-01-28

> BO09784.3prime
ATGGTCTAGAAAGCTTGCAATAACCTGCTTGAGAGCTTCAAGGAAACCAA
AATTAATCAGTCCCAGGTAGAGGTAGTAGCAGTTGAGCTTGAAAAGCTCC
CATCGCTCGCGCACCCGCAGCCACAGGATTCGCGAGGATCCGGAATCAGA
CTGCTTGGCTCGCTGTTCAGCGTACGAAGATTGAACACAGCACTTGGACA
TAACCCAGAAGGCGGTCATCCGGTTCTGCGTGCGCAGCGTGGACTCAATT
CCGCGGATCAAGTCATTTGTCTTCAGAATGAGCAGCATCTGACGGTCCAC
CTGCTCCAATACGTCGGAAATGTGCGGCAGCACCAGGGACGTGTTGTTTT
GCAGCGTGTTCTTCTCTTCTTTGGAATATTTGACTTTGGTCAGGCCCTGC
ATCACCGTCTCCCAAGGTCGTCCCGTCACCATGCATGCGAAAAGACCGTA
CAGATCGCCCTTAATTCCCAGCTGCTCACTGTGTTGTCGCATCGCTTTGC
GGTCCACCTTAAGGATACTCAGCCAGAGATTGGAATAATCGTACCGAAAC
TTGTCCGTCAGATTTGCATACAGCCCGTGATCCAGCAGAACTATCTCCAG
ACTGTTTTCCGGCGTGCGTCTTACCAAGATGTTTCCTGGATGCGGATCGC
TGTGCACGAAACCGGTGCGGAAGATCATCTCGGAGTAGAGCTGCCCAATG
CGATTGGCCACCGCAAATGAGTCAATTTTGTTTCGCCGTATGTAGTCCAA
GTCCGTGACATGCCCACCCTCCAGGTACTCCATGACTAGGACTCGAGAAG
AGCTATATTTCCAGTATATCTTGGGCACCCGAAGCCACGAGTACTTCTTG
AACTGCTTGGCTACTTTCTCGGCGTTACGTCCCTCGT

BO09784.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-PA 1557 CG3608-RA 686..1554 887..19 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-RB 1901 CG3608-RB 979..1847 887..19 4345 100 Minus
CG3608-RA 1736 CG3608-RA 814..1682 887..19 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24612860..24613288 887..459 2145 100 Minus
2R 25286936 2R 24613506..24613852 365..19 1735 100 Minus
2R 25286936 2R 24613349..24613446 461..364 490 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:43:06 has no hits.

BO09784.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:01 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-PA 686..1557 18..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:16 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-PA 686..1557 18..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:02 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 814..1682 19..887 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:22 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 814..1682 19..887 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:22 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24612860..24613287 460..887 100 -> Minus
2R 24613351..24613446 364..459 100 -> Minus
2R 24613508..24613852 19..363 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:02 Download gff for BO09784.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20500383..20500810 460..887 100 -> Minus
arm_2R 20500874..20500969 364..459 100 -> Minus
arm_2R 20501031..20501375 19..363 100   Minus

BO09784.5prime Sequence

915 bp (756 high quality bases) assembled on 2006-01-28

> BO09784.5prime
GAAGTTATCAGTCGACATGCTGTTGCGTCGCGTTCTGGGCTACGGAGTAG
TCGGCGCCGGACTGGCCTCCGCCGGCTGGAGCCTGCACACCAACGACTAC
GATCCCAACTCACTCGGAATCGTCCGGCTGTCGCGATCCGCCGCCGCCGT
CGTGGACGTGGCACTCACCTACAAGCGGGAACTTTACTACAAGGAATGGG
ATAAGGAGACGCCCGAGTACAAGGCGGAAAAGAGCCGGGTCCACAAGATA
GCCGCCGAGAAGCTACTTCAGCTGATCTGCATAAACAAGGGTGTCTACAT
CAAGGTGGGCCAGCACATAGGGGCCTTGGAGTACCTGCTACCCAAGGAGT
TTGTGCAGACCATGAAGGTACTTCACTCCGATGCGCCGCAAAACCCCATT
GAGGACCTGTATAAGGTAATCCGACAGGATCTGCACTGCAATCCGGAAGA
AATCTTCGACAGCTTCGAGAGGGAGCCGCTGGGAACTGCTTCCCTTGCCC
AGGTACATAAGGCGCGCCTCAAGACCGGCGAGCTGGTGGCCGTGAAGGTG
CAACATCCCTACGTTAAGGGTAACTCCCGCGTTGACATGAAGACCATGGA
ACTGGCCGTTAATGTGCTGGCTCGGATATTTCCCGACTTCAAGATCCACT
GGCTGGTTGAGGAGTCTAAAAAGAACTTGCCAATCGAACTCGATTTCCTA
AACGAGGGACGTAACGCCGAGAAAGTAGCCAAGCAGTTCAAGAAGTACTC
GTGGCTTCGGGTGCCCAAGATATACTGGAAATATAGCTCTTCTCGAGTCC
TAGTCATGGAGTACCTGGAGGGTGGGCATGTCACGGACTTGGACTACATA
CGGCGAAACAAAATTGACTCATTTGCGGTGGCCCATCGCATTGGGCAGCT
CTACTCCGAGATGAT

BO09784.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-PA 1557 CG3608-RA 1..899 17..915 4470 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-RB 1901 CG3608-RB 294..1192 17..915 4480 99.9 Plus
CG3608-RA 1736 CG3608-RA 129..1027 17..915 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24612175..24613073 17..915 4480 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:55:04 has no hits.

BO09784.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:02 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:18 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:37 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 125..1027 10..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:04 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 125..1027 10..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:04 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24612171..24613073 10..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:37 Download gff for BO09784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20499694..20500596 10..915 99   Plus

BO09784.complete Sequence

1588 bp (1588 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631571

> BO09784.complete
GAAGTTATCAGTCGACATGCTGTTGCGTCGCGTTCTGGGCTACGGAGTAG
TCGGCGCCGGACTGGCCTCCGCCGGCTGGAGCCTGCACACCAACGACTAC
GATCCCAACTCACTCGGAATCGTCCGGCTGTCGCGATCCGCCGCCGCCGT
CGTGGACGTGGCACTCACCTACAAGCGGGAACTTTACTACAAGGAATGGG
ATAAGGAGACGCCCGAGTACAAGGCGGAAAAGAGCCGGGTCCACAAGATA
GCCGCCGAGAAGCTACTTCAGCTGATCTGCATAAACAAGGGTGTCTACAT
CAAGGTGGGCCAGCACATAGGGGCCTTGGAGTACCTGCTACCCAAGGAGT
TTGTGCAGACCATGAAGGTACTTCACTCCGATGCGCCGCAAAACCCCATT
GAGGACCTGTATAAGGTAATCCGACAGGATCTGCACTGCAATCCGGAAGA
AATCTTCGACAGCTTCGAGAGGGAGCCGCTGGGAACTGCTTCCCTTGCCC
AGGTACATAAGGCGCGCCTCAAGACCGGCGAGCTGGTGGCCGTGAAGGTG
CAACATCCCTACGTTAAGGGTAACTCCCGCGTTGACATGAAGACCATGGA
ACTGGCCGTTAATGTGCTGGCTCGGATATTTCCCGACTTCAAGATCCACT
GGCTGGTTGAGGAGTCTAAAAAGAACTTGCCAATCGAACTCGATTTCCTA
AACGAGGGACGTAACGCCGAGAAAGTAGCCAAGCAGTTCAAGAAGTACTC
GTGGCTTCGGGTGCCCAAGATATACTGGAAATATAGCTCTTCTCGAGTCC
TAGTCATGGAGTACCTGGAGGGTGGGCATGTCACGGACTTGGACTACATA
CGGCGAAACAAAATTGACTCATTTGCGGTGGCCAATCGCATTGGGCAGCT
CTACTCCGAGATGATCTTCCGCACCGGTTTCGTGCACAGCGATCCGCATC
CAGGAAACATCTTGGTAAGACGCACGCCGGAAAACAGTCTGGAGATAGTT
CTGCTGGATCACGGGCTGTATGCAAATCTGACGGACAAGTTTCGGTACGA
TTATTCCAATCTCTGGCTGAGTATCCTTAAGGTGGACCGCAAAGCGATGC
GACAACACAGTGAGCAGCTGGGAATTAAGGGCGATCTGTACGGTCTTTTC
GCATGCATGGTGACGGGACGACCTTGGGAGACGGTGATGCAGGGCCTGAC
CAAAGTCAAATATTCCAAAGAAGAGAAGAACACGCTGCAAAACAACACGT
CCCTGGTGCTGCCGCACATTTCCGACGTATTGGAGCAGGTGGACCGTCAG
ATGCTGCTCATTCTGAAGACAAATGACTTGATCCGCGGAATTGAGTCCAC
GCTGCGCACGCAGAACCGGATGACCGCCTTCTGGGTTATGTCCAAGTGCT
GTGTTCAATCTTCGTACGCTGAACAGCGAGCCAAGCAGTCTGATTCCGGA
TCCTCGCGAATCCTGTGGCTGCGGGTGCGCGAGCGATGGGAGCTTTTCAA
GCTCAACTGCTACTACCTCTACCTGGGACTGATTAATTTTGGTTTCCTTG
AAGCTCTCAAGCAGGTTATTGCAAGCTTTCTAGACCAT

BO09784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-RB 1557 CG3608-PB 1..1554 17..1570 7770 100 Plus
CG3608-RA 1557 CG3608-PA 1..1554 17..1570 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-RB 1901 CG3608-RB 294..1847 17..1570 7770 100 Plus
CG3608-RA 1736 CG3608-RA 129..1682 17..1570 7770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24612175..24613288 17..1130 5570 100 Plus
2R 25286936 2R 24613506..24613852 1224..1570 1735 100 Plus
2R 25286936 2R 24613349..24613446 1128..1225 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:31 has no hits.

BO09784.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:34 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:39 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 123..1680 10..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:39 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 129..1682 17..1572 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:34 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 123..1680 10..1570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:16 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 129..1682 17..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:16 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24613351..24613446 1130..1225 100 -> Plus
2R 24613508..24613852 1226..1572 99   Plus
2R 24612175..24613287 17..1129 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:39 Download gff for BO09784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20500874..20500969 1130..1225 100 -> Plus
arm_2R 20499698..20500810 17..1129 100 -> Plus
arm_2R 20501031..20501375 1226..1572 99   Plus

BO09784.pep Sequence

Translation from 16 to 1588

> BO09784.pep
MLLRRVLGYGVVGAGLASAGWSLHTNDYDPNSLGIVRLSRSAAAVVDVAL
TYKRELYYKEWDKETPEYKAEKSRVHKIAAEKLLQLICINKGVYIKVGQH
IGALEYLLPKEFVQTMKVLHSDAPQNPIEDLYKVIRQDLHCNPEEIFDSF
EREPLGTASLAQVHKARLKTGELVAVKVQHPYVKGNSRVDMKTMELAVNV
LARIFPDFKIHWLVEESKKNLPIELDFLNEGRNAEKVAKQFKKYSWLRVP
KIYWKYSSSRVLVMEYLEGGHVTDLDYIRRNKIDSFAVANRIGQLYSEMI
FRTGFVHSDPHPGNILVRRTPENSLEIVLLDHGLYANLTDKFRYDYSNLW
LSILKVDRKAMRQHSEQLGIKGDLYGLFACMVTGRPWETVMQGLTKVKYS
KEEKNTLQNNTSLVLPHISDVLEQVDRQMLLILKTNDLIRGIESTLRTQN
RMTAFWVMSKCCVQSSYAEQRAKQSDSGSSRILWLRVRERWELFKLNCYY
LYLGLINFGFLEALKQVIASFLDH

BO09784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-PB 518 CG3608-PB 1..518 1..518 2693 100 Plus
CG3608-PA 518 CG3608-PA 1..518 1..518 2693 100 Plus
CG7616-PB 557 CG7616-PB 36..465 4..442 672 34.8 Plus
CG7616-PA 557 CG7616-PA 36..465 4..442 672 34.8 Plus
CG32649-PA 661 CG32649-PA 278..563 80..369 208 24.7 Plus