Clone Sequence Records
BO09784.3prime Sequence
887 bp (819 high quality bases) assembled on 2006-01-28
> BO09784.3prime
ATGGTCTAGAAAGCTTGCAATAACCTGCTTGAGAGCTTCAAGGAAACCAA
AATTAATCAGTCCCAGGTAGAGGTAGTAGCAGTTGAGCTTGAAAAGCTCC
CATCGCTCGCGCACCCGCAGCCACAGGATTCGCGAGGATCCGGAATCAGA
CTGCTTGGCTCGCTGTTCAGCGTACGAAGATTGAACACAGCACTTGGACA
TAACCCAGAAGGCGGTCATCCGGTTCTGCGTGCGCAGCGTGGACTCAATT
CCGCGGATCAAGTCATTTGTCTTCAGAATGAGCAGCATCTGACGGTCCAC
CTGCTCCAATACGTCGGAAATGTGCGGCAGCACCAGGGACGTGTTGTTTT
GCAGCGTGTTCTTCTCTTCTTTGGAATATTTGACTTTGGTCAGGCCCTGC
ATCACCGTCTCCCAAGGTCGTCCCGTCACCATGCATGCGAAAAGACCGTA
CAGATCGCCCTTAATTCCCAGCTGCTCACTGTGTTGTCGCATCGCTTTGC
GGTCCACCTTAAGGATACTCAGCCAGAGATTGGAATAATCGTACCGAAAC
TTGTCCGTCAGATTTGCATACAGCCCGTGATCCAGCAGAACTATCTCCAG
ACTGTTTTCCGGCGTGCGTCTTACCAAGATGTTTCCTGGATGCGGATCGC
TGTGCACGAAACCGGTGCGGAAGATCATCTCGGAGTAGAGCTGCCCAATG
CGATTGGCCACCGCAAATGAGTCAATTTTGTTTCGCCGTATGTAGTCCAA
GTCCGTGACATGCCCACCCTCCAGGTACTCCATGACTAGGACTCGAGAAG
AGCTATATTTCCAGTATATCTTGGGCACCCGAAGCCACGAGTACTTCTTG
AACTGCTTGGCTACTTTCTCGGCGTTACGTCCCTCGT
BO09784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-PA | 1557 | CG3608-RA | 686..1554 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-RB | 1901 | CG3608-RB | 979..1847 | 887..19 | 4345 | 100 | Minus |
CG3608-RA | 1736 | CG3608-RA | 814..1682 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24612860..24613288 | 887..459 | 2145 | 100 | Minus |
2R | 25286936 | 2R | 24613506..24613852 | 365..19 | 1735 | 100 | Minus |
2R | 25286936 | 2R | 24613349..24613446 | 461..364 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:43:06 has no hits.
BO09784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:01 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-PA | 686..1557 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:16 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-PA | 686..1557 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:02 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 814..1682 | 19..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:22 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 814..1682 | 19..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:22 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24612860..24613287 | 460..887 | 100 | -> | Minus |
2R | 24613351..24613446 | 364..459 | 100 | -> | Minus |
2R | 24613508..24613852 | 19..363 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:02 Download gff for
BO09784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20500383..20500810 | 460..887 | 100 | -> | Minus |
arm_2R | 20500874..20500969 | 364..459 | 100 | -> | Minus |
arm_2R | 20501031..20501375 | 19..363 | 100 | | Minus |
BO09784.5prime Sequence
915 bp (756 high quality bases) assembled on 2006-01-28
> BO09784.5prime
GAAGTTATCAGTCGACATGCTGTTGCGTCGCGTTCTGGGCTACGGAGTAG
TCGGCGCCGGACTGGCCTCCGCCGGCTGGAGCCTGCACACCAACGACTAC
GATCCCAACTCACTCGGAATCGTCCGGCTGTCGCGATCCGCCGCCGCCGT
CGTGGACGTGGCACTCACCTACAAGCGGGAACTTTACTACAAGGAATGGG
ATAAGGAGACGCCCGAGTACAAGGCGGAAAAGAGCCGGGTCCACAAGATA
GCCGCCGAGAAGCTACTTCAGCTGATCTGCATAAACAAGGGTGTCTACAT
CAAGGTGGGCCAGCACATAGGGGCCTTGGAGTACCTGCTACCCAAGGAGT
TTGTGCAGACCATGAAGGTACTTCACTCCGATGCGCCGCAAAACCCCATT
GAGGACCTGTATAAGGTAATCCGACAGGATCTGCACTGCAATCCGGAAGA
AATCTTCGACAGCTTCGAGAGGGAGCCGCTGGGAACTGCTTCCCTTGCCC
AGGTACATAAGGCGCGCCTCAAGACCGGCGAGCTGGTGGCCGTGAAGGTG
CAACATCCCTACGTTAAGGGTAACTCCCGCGTTGACATGAAGACCATGGA
ACTGGCCGTTAATGTGCTGGCTCGGATATTTCCCGACTTCAAGATCCACT
GGCTGGTTGAGGAGTCTAAAAAGAACTTGCCAATCGAACTCGATTTCCTA
AACGAGGGACGTAACGCCGAGAAAGTAGCCAAGCAGTTCAAGAAGTACTC
GTGGCTTCGGGTGCCCAAGATATACTGGAAATATAGCTCTTCTCGAGTCC
TAGTCATGGAGTACCTGGAGGGTGGGCATGTCACGGACTTGGACTACATA
CGGCGAAACAAAATTGACTCATTTGCGGTGGCCCATCGCATTGGGCAGCT
CTACTCCGAGATGAT
BO09784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-PA | 1557 | CG3608-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-RB | 1901 | CG3608-RB | 294..1192 | 17..915 | 4480 | 99.9 | Plus |
CG3608-RA | 1736 | CG3608-RA | 129..1027 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24612175..24613073 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:55:04 has no hits.
BO09784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:02 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:18 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:37 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 125..1027 | 10..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:04 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 125..1027 | 10..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:04 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24612171..24613073 | 10..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:37 Download gff for
BO09784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20499694..20500596 | 10..915 | 99 | | Plus |
BO09784.complete Sequence
1588 bp (1588 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631571
> BO09784.complete
GAAGTTATCAGTCGACATGCTGTTGCGTCGCGTTCTGGGCTACGGAGTAG
TCGGCGCCGGACTGGCCTCCGCCGGCTGGAGCCTGCACACCAACGACTAC
GATCCCAACTCACTCGGAATCGTCCGGCTGTCGCGATCCGCCGCCGCCGT
CGTGGACGTGGCACTCACCTACAAGCGGGAACTTTACTACAAGGAATGGG
ATAAGGAGACGCCCGAGTACAAGGCGGAAAAGAGCCGGGTCCACAAGATA
GCCGCCGAGAAGCTACTTCAGCTGATCTGCATAAACAAGGGTGTCTACAT
CAAGGTGGGCCAGCACATAGGGGCCTTGGAGTACCTGCTACCCAAGGAGT
TTGTGCAGACCATGAAGGTACTTCACTCCGATGCGCCGCAAAACCCCATT
GAGGACCTGTATAAGGTAATCCGACAGGATCTGCACTGCAATCCGGAAGA
AATCTTCGACAGCTTCGAGAGGGAGCCGCTGGGAACTGCTTCCCTTGCCC
AGGTACATAAGGCGCGCCTCAAGACCGGCGAGCTGGTGGCCGTGAAGGTG
CAACATCCCTACGTTAAGGGTAACTCCCGCGTTGACATGAAGACCATGGA
ACTGGCCGTTAATGTGCTGGCTCGGATATTTCCCGACTTCAAGATCCACT
GGCTGGTTGAGGAGTCTAAAAAGAACTTGCCAATCGAACTCGATTTCCTA
AACGAGGGACGTAACGCCGAGAAAGTAGCCAAGCAGTTCAAGAAGTACTC
GTGGCTTCGGGTGCCCAAGATATACTGGAAATATAGCTCTTCTCGAGTCC
TAGTCATGGAGTACCTGGAGGGTGGGCATGTCACGGACTTGGACTACATA
CGGCGAAACAAAATTGACTCATTTGCGGTGGCCAATCGCATTGGGCAGCT
CTACTCCGAGATGATCTTCCGCACCGGTTTCGTGCACAGCGATCCGCATC
CAGGAAACATCTTGGTAAGACGCACGCCGGAAAACAGTCTGGAGATAGTT
CTGCTGGATCACGGGCTGTATGCAAATCTGACGGACAAGTTTCGGTACGA
TTATTCCAATCTCTGGCTGAGTATCCTTAAGGTGGACCGCAAAGCGATGC
GACAACACAGTGAGCAGCTGGGAATTAAGGGCGATCTGTACGGTCTTTTC
GCATGCATGGTGACGGGACGACCTTGGGAGACGGTGATGCAGGGCCTGAC
CAAAGTCAAATATTCCAAAGAAGAGAAGAACACGCTGCAAAACAACACGT
CCCTGGTGCTGCCGCACATTTCCGACGTATTGGAGCAGGTGGACCGTCAG
ATGCTGCTCATTCTGAAGACAAATGACTTGATCCGCGGAATTGAGTCCAC
GCTGCGCACGCAGAACCGGATGACCGCCTTCTGGGTTATGTCCAAGTGCT
GTGTTCAATCTTCGTACGCTGAACAGCGAGCCAAGCAGTCTGATTCCGGA
TCCTCGCGAATCCTGTGGCTGCGGGTGCGCGAGCGATGGGAGCTTTTCAA
GCTCAACTGCTACTACCTCTACCTGGGACTGATTAATTTTGGTTTCCTTG
AAGCTCTCAAGCAGGTTATTGCAAGCTTTCTAGACCAT
BO09784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-RB | 1557 | CG3608-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG3608-RA | 1557 | CG3608-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-RB | 1901 | CG3608-RB | 294..1847 | 17..1570 | 7770 | 100 | Plus |
CG3608-RA | 1736 | CG3608-RA | 129..1682 | 17..1570 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24612175..24613288 | 17..1130 | 5570 | 100 | Plus |
2R | 25286936 | 2R | 24613506..24613852 | 1224..1570 | 1735 | 100 | Plus |
2R | 25286936 | 2R | 24613349..24613446 | 1128..1225 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:31 has no hits.
BO09784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:34 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 1..1557 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:39 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 123..1680 | 10..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:39 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 129..1682 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:34 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 123..1680 | 10..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:16 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3608-RA | 129..1682 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:16 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24613351..24613446 | 1130..1225 | 100 | -> | Plus |
2R | 24613508..24613852 | 1226..1572 | 99 | | Plus |
2R | 24612175..24613287 | 17..1129 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:39 Download gff for
BO09784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20500874..20500969 | 1130..1225 | 100 | -> | Plus |
arm_2R | 20499698..20500810 | 17..1129 | 100 | -> | Plus |
arm_2R | 20501031..20501375 | 1226..1572 | 99 | | Plus |
BO09784.pep Sequence
Translation from 16 to 1588
> BO09784.pep
MLLRRVLGYGVVGAGLASAGWSLHTNDYDPNSLGIVRLSRSAAAVVDVAL
TYKRELYYKEWDKETPEYKAEKSRVHKIAAEKLLQLICINKGVYIKVGQH
IGALEYLLPKEFVQTMKVLHSDAPQNPIEDLYKVIRQDLHCNPEEIFDSF
EREPLGTASLAQVHKARLKTGELVAVKVQHPYVKGNSRVDMKTMELAVNV
LARIFPDFKIHWLVEESKKNLPIELDFLNEGRNAEKVAKQFKKYSWLRVP
KIYWKYSSSRVLVMEYLEGGHVTDLDYIRRNKIDSFAVANRIGQLYSEMI
FRTGFVHSDPHPGNILVRRTPENSLEIVLLDHGLYANLTDKFRYDYSNLW
LSILKVDRKAMRQHSEQLGIKGDLYGLFACMVTGRPWETVMQGLTKVKYS
KEEKNTLQNNTSLVLPHISDVLEQVDRQMLLILKTNDLIRGIESTLRTQN
RMTAFWVMSKCCVQSSYAEQRAKQSDSGSSRILWLRVRERWELFKLNCYY
LYLGLINFGFLEALKQVIASFLDH
BO09784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3608-PB | 518 | CG3608-PB | 1..518 | 1..518 | 2693 | 100 | Plus |
CG3608-PA | 518 | CG3608-PA | 1..518 | 1..518 | 2693 | 100 | Plus |
CG7616-PB | 557 | CG7616-PB | 36..465 | 4..442 | 672 | 34.8 | Plus |
CG7616-PA | 557 | CG7616-PA | 36..465 | 4..442 | 672 | 34.8 | Plus |
CG32649-PA | 661 | CG32649-PA | 278..563 | 80..369 | 208 | 24.7 | Plus |