Clone BO09785 Report

Search the DGRC for BO09785

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptMes2-RB
Protein status:BO09785.pep: validated full length
Sequenced Size:1345

Clone Sequence Records

BO09785.3prime Sequence

876 bp (835 high quality bases) assembled on 2006-01-28

> BO09785.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGGACCCTTCGCACTGCTGCACTTGAA
CCAGTAAGAGAAGAATGCGATTCATTAAATTGTCCGCGTCCGAGTCCTCC
ATGCTGTTTAGCTTGGCTGAAATAAAGCCGCAGAACTTGGAGTTCAAAAC
CTCACGTACAGTTTGTGGGGGCGGCAGATCCAACCCTCCGCTTGCGACGC
CCTGTTGCTGCCGGAGATGGCGGTGCTGTTGCAGCATTTGTTCTTCGTAG
TCGTCACCATCGATAACCGCATCGCCGTGACCGTTTCCTTCCTCCAAAAC
ATCTTGATCGACGTTACGGCGAAGCTTGCGGGACATGACCACATCGTCCA
CACCAACATTGGGGCTACCGCGTGAGTTGGAATCCAGAATCAGAGGATAA
GGGAAATCTGCATCGATGGCATCCAACTCCTCCACTACGTCGGATGCGTG
GGCGATATCTTCGTCCCCGCTGCGTATCGAGCTGTCGTCCATGTCTTCAT
AGCTGTGATGCTGTGCCCTTTGCTCGTTTCTCGTTGAGCTCACCCGACTG
TCGTTGTGAGCCTGGTGAGCGGGCAGAGGAAGTGGCCCGCCGCCGGAGCT
ACTCCCACTTGTGCTACTTCCGGCCCCACCGCCCACCGAGAGATCCAGCT
CCGGCTTCACATAGTAGTCGCAATAGTAGTGATCGTCGCTTACATTGAGC
GAGGAGCACTTTGAGAGATTTAACACTGAGGCGGACTCGTTAAAGGAATT
GGACAGCTTCAGGGTCATTGCCTTTCCCCCTGCAGCCAAGCTGTTACTGT
TGTTGTTGTTGTTGTTGTTATTGTTAATATGGCCATAGGGTGTCAGGCTT
AGATCGGGTGCATGCGAAGCGCCCTT

BO09785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11100-PB 1314 Mes2-RB 454..1311 876..19 4240 99.7 Minus
CG11100-PC 1119 Mes2-RC 259..1116 876..19 4240 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RC 2208 CG11100-RC 490..1347 876..19 4260 99.8 Minus
Mes2-RB 2302 CG11100-RB 584..1441 876..19 4260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22951387 874..19 4250 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 10:51:55 has no hits.

BO09785.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:03 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-PB 454..1314 18..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:19 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11100-PC 259..1119 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:24:10 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 584..1441 19..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:16 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 584..1441 19..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:16 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22950530..22951387 19..876 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:24:10 Download gff for BO09785.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22943630..22944487 19..876 99   Minus

BO09785.5prime Sequence

881 bp (780 high quality bases) assembled on 2006-01-28

> BO09785.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGG

BO09785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11100-PB 1314 Mes2-RB 1..865 17..881 4325 100 Plus
CG11100-PC 1119 Mes2-RC 1..670 212..881 3350 100 Plus
CG11100-PA 513 Mes2-RA 1..154 17..170 770 100 Plus
CG11100-PA 513 Mes2-RA 484..513 171..200 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 2302 CG11100-RB 131..995 17..881 4325 100 Plus
Mes2-RC 2208 CG11100-RC 191..901 171..881 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22950941 472..881 2050 100 Plus
3L 28110227 3L 22946270..22946571 171..472 1510 100 Plus
3L 28110227 3L 22945787..22945940 17..170 770 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:44:15 has no hits.

BO09785.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:04 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-PB 1..865 17..881 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:21 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11100-PB 1..865 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:48 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 124..995 9..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:15 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 124..995 9..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:15 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22945780..22945940 9..170 97 -> Plus
3L 22946270..22946570 171..471 100 -> Plus
3L 22950532..22950941 472..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:48 Download gff for BO09785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22939370..22939670 171..471 100 -> Plus
arm_3L 22938880..22939040 9..170 97 -> Plus
arm_3L 22943632..22944041 472..881 100   Plus

BO09785.complete Sequence

1345 bp (1345 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631572

> BO09785.complete
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGC
ATCCGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATC
CTCTGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGAC
GATGTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTT
GGAGGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACG
AAGAACAAATGCTGCAACAGCACCGCCATCTCCGGCAGCAACAGGGCGTC
GCAAGCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGTTTT
GAACTCCAAGTTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCATGGAGG
ACTCGGACGCGGACAATTTAATGAATCGCATTCTTCTCTTACTGGTTCAA
GTGCAGCAGTGCGAAGGGTCCACGAAAGCAAGCTTTCTAGACCAT

BO09785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 1314 CG11100-PB 1..1311 17..1327 6555 100 Plus
Mes2-RC 1119 CG11100-PC 1..1116 212..1327 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 2302 CG11100-RB 131..1441 17..1327 6555 100 Plus
Mes2-RC 2208 CG11100-RC 191..1347 171..1327 5785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22951387 472..1327 4280 100 Plus
3L 28110227 3L 22946270..22946571 171..472 1510 100 Plus
3L 28110227 3L 22945787..22945940 17..170 770 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:05 has no hits.

BO09785.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:35 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 17..1328 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:41 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 122..1439 9..1327 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:34 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 131..1441 17..1329 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:35 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 122..1439 9..1327 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:44 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 131..1441 17..1329 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:44 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22945787..22945940 17..170 100 -> Plus
3L 22946270..22946570 171..471 100 -> Plus
3L 22950532..22951387 472..1329 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:34 Download gff for BO09785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22938887..22939040 17..170 100 -> Plus
arm_3L 22939370..22939670 171..471 100 -> Plus
arm_3L 22943632..22944487 472..1329 99   Plus

BO09785.pep Sequence

Translation from 16 to 1345

> BO09785.pep
MAPVSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIK
KLVRRNASDKLKLIQMVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFN
APGRRVARAFKSLRESYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRE
RKGASHATDLSLTTYGHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESA
SVLNLSKCSSLNVSDDHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPL
PLPAHQAHNDSRVSSTRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVE
ELDAIDADFPYPLILDSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNG
HGDAVIDGDDYEEQMLQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFC
GFISAKLNSMEDSDADNLMNRILLLLVQVQQCEGSTKASFLDH

BO09785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-PB 437 CG11100-PB 1..437 1..437 2269 100 Plus
Mes2-PC 372 CG11100-PC 1..372 66..437 1948 100 Plus
CG12768-PD 429 CG12768-PD 5..143 55..182 296 46.8 Plus
CG12768-PC 429 CG12768-PC 5..143 55..182 296 46.8 Plus
CG12768-PB 429 CG12768-PB 5..143 55..182 296 46.8 Plus