Clone Sequence Records
BO09785.3prime Sequence
876 bp (835 high quality bases) assembled on 2006-01-28
> BO09785.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGGACCCTTCGCACTGCTGCACTTGAA
CCAGTAAGAGAAGAATGCGATTCATTAAATTGTCCGCGTCCGAGTCCTCC
ATGCTGTTTAGCTTGGCTGAAATAAAGCCGCAGAACTTGGAGTTCAAAAC
CTCACGTACAGTTTGTGGGGGCGGCAGATCCAACCCTCCGCTTGCGACGC
CCTGTTGCTGCCGGAGATGGCGGTGCTGTTGCAGCATTTGTTCTTCGTAG
TCGTCACCATCGATAACCGCATCGCCGTGACCGTTTCCTTCCTCCAAAAC
ATCTTGATCGACGTTACGGCGAAGCTTGCGGGACATGACCACATCGTCCA
CACCAACATTGGGGCTACCGCGTGAGTTGGAATCCAGAATCAGAGGATAA
GGGAAATCTGCATCGATGGCATCCAACTCCTCCACTACGTCGGATGCGTG
GGCGATATCTTCGTCCCCGCTGCGTATCGAGCTGTCGTCCATGTCTTCAT
AGCTGTGATGCTGTGCCCTTTGCTCGTTTCTCGTTGAGCTCACCCGACTG
TCGTTGTGAGCCTGGTGAGCGGGCAGAGGAAGTGGCCCGCCGCCGGAGCT
ACTCCCACTTGTGCTACTTCCGGCCCCACCGCCCACCGAGAGATCCAGCT
CCGGCTTCACATAGTAGTCGCAATAGTAGTGATCGTCGCTTACATTGAGC
GAGGAGCACTTTGAGAGATTTAACACTGAGGCGGACTCGTTAAAGGAATT
GGACAGCTTCAGGGTCATTGCCTTTCCCCCTGCAGCCAAGCTGTTACTGT
TGTTGTTGTTGTTGTTGTTATTGTTAATATGGCCATAGGGTGTCAGGCTT
AGATCGGGTGCATGCGAAGCGCCCTT
BO09785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11100-PB | 1314 | Mes2-RB | 454..1311 | 876..19 | 4240 | 99.7 | Minus |
CG11100-PC | 1119 | Mes2-RC | 259..1116 | 876..19 | 4240 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RC | 2208 | CG11100-RC | 490..1347 | 876..19 | 4260 | 99.8 | Minus |
Mes2-RB | 2302 | CG11100-RB | 584..1441 | 876..19 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22951387 | 874..19 | 4250 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:51:55 has no hits.
BO09785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:03 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-PB | 454..1314 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:19 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11100-PC | 259..1119 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:24:10 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 584..1441 | 19..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:16 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 584..1441 | 19..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:16 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22950530..22951387 | 19..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:24:10 Download gff for
BO09785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22943630..22944487 | 19..876 | 99 | | Minus |
BO09785.5prime Sequence
881 bp (780 high quality bases) assembled on 2006-01-28
> BO09785.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGG
BO09785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11100-PB | 1314 | Mes2-RB | 1..865 | 17..881 | 4325 | 100 | Plus |
CG11100-PC | 1119 | Mes2-RC | 1..670 | 212..881 | 3350 | 100 | Plus |
CG11100-PA | 513 | Mes2-RA | 1..154 | 17..170 | 770 | 100 | Plus |
CG11100-PA | 513 | Mes2-RA | 484..513 | 171..200 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 2302 | CG11100-RB | 131..995 | 17..881 | 4325 | 100 | Plus |
Mes2-RC | 2208 | CG11100-RC | 191..901 | 171..881 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22950941 | 472..881 | 2050 | 100 | Plus |
3L | 28110227 | 3L | 22946270..22946571 | 171..472 | 1510 | 100 | Plus |
3L | 28110227 | 3L | 22945787..22945940 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:44:15 has no hits.
BO09785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:04 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:21 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11100-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:48 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 124..995 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:15 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 124..995 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:15 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22945780..22945940 | 9..170 | 97 | -> | Plus |
3L | 22946270..22946570 | 171..471 | 100 | -> | Plus |
3L | 22950532..22950941 | 472..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:48 Download gff for
BO09785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22939370..22939670 | 171..471 | 100 | -> | Plus |
arm_3L | 22938880..22939040 | 9..170 | 97 | -> | Plus |
arm_3L | 22943632..22944041 | 472..881 | 100 | | Plus |
BO09785.complete Sequence
1345 bp (1345 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631572
> BO09785.complete
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGC
ATCCGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATC
CTCTGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGAC
GATGTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTT
GGAGGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACG
AAGAACAAATGCTGCAACAGCACCGCCATCTCCGGCAGCAACAGGGCGTC
GCAAGCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGTTTT
GAACTCCAAGTTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCATGGAGG
ACTCGGACGCGGACAATTTAATGAATCGCATTCTTCTCTTACTGGTTCAA
GTGCAGCAGTGCGAAGGGTCCACGAAAGCAAGCTTTCTAGACCAT
BO09785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 1314 | CG11100-PB | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Mes2-RC | 1119 | CG11100-PC | 1..1116 | 212..1327 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 2302 | CG11100-RB | 131..1441 | 17..1327 | 6555 | 100 | Plus |
Mes2-RC | 2208 | CG11100-RC | 191..1347 | 171..1327 | 5785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22951387 | 472..1327 | 4280 | 100 | Plus |
3L | 28110227 | 3L | 22946270..22946571 | 171..472 | 1510 | 100 | Plus |
3L | 28110227 | 3L | 22945787..22945940 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:05 has no hits.
BO09785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:35 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 1..1314 | 17..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:41 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 122..1439 | 9..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:34 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 131..1441 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:35 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 122..1439 | 9..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:44 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 131..1441 | 17..1329 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:44 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22945787..22945940 | 17..170 | 100 | -> | Plus |
3L | 22946270..22946570 | 171..471 | 100 | -> | Plus |
3L | 22950532..22951387 | 472..1329 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:34 Download gff for
BO09785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22938887..22939040 | 17..170 | 100 | -> | Plus |
arm_3L | 22939370..22939670 | 171..471 | 100 | -> | Plus |
arm_3L | 22943632..22944487 | 472..1329 | 99 | | Plus |
BO09785.pep Sequence
Translation from 16 to 1345
> BO09785.pep
MAPVSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIK
KLVRRNASDKLKLIQMVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFN
APGRRVARAFKSLRESYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRE
RKGASHATDLSLTTYGHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESA
SVLNLSKCSSLNVSDDHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPL
PLPAHQAHNDSRVSSTRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVE
ELDAIDADFPYPLILDSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNG
HGDAVIDGDDYEEQMLQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFC
GFISAKLNSMEDSDADNLMNRILLLLVQVQQCEGSTKASFLDH
BO09785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-PB | 437 | CG11100-PB | 1..437 | 1..437 | 2269 | 100 | Plus |
Mes2-PC | 372 | CG11100-PC | 1..372 | 66..437 | 1948 | 100 | Plus |
CG12768-PD | 429 | CG12768-PD | 5..143 | 55..182 | 296 | 46.8 | Plus |
CG12768-PC | 429 | CG12768-PC | 5..143 | 55..182 | 296 | 46.8 | Plus |
CG12768-PB | 429 | CG12768-PB | 5..143 | 55..182 | 296 | 46.8 | Plus |