Clone Sequence Records
BO09786.3prime Sequence
959 bp (847 high quality bases) assembled on 2006-01-28
> BO09786.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGGATTCCTTGGCCAATTGTTCCAGGA
GAACGCTGATGCGGCGGAATGAGTCCTTGAAAATGTCGTTGAACTTGCGA
GCGCTTGTCTTTAGGCTATCCCGATAGGCGGTGGTATTAATGAACACAGC
TTCCGAGGTGATGGAGTAAAAGACGCCATAGCCATCGAAGACCATGGGCG
CCACGAAACCAACGTTGGCCGTGAAGCCCAGCGTGCTGGACGAGAGCACA
AAGTTACCTCCTCCGCCGCTCTTGGTGTACATCGGATCGTCGTAGAAGGC
GGGAATGTCCATTTTGCTTTCATACGCCGCGCACCACAGGCCAAACAAGT
GCCTATCGATGCCGTGTCCCTTGCGCGCCTCGTTCATGAAGTGCTTGTGC
TCATCGACTGCCCTACGGAACGCCCTGGCCAGTGACATATCGCCAACCTG
CTTGTTGGATGACGCCCTCAGGAATTCAGCCACAGCGGAAGTGCATGATC
GCAGGGTCTCTGTTCGTCCATTGTAGTACTGTCGCATCAGAGCAGTCTCA
TATGTGGGAGCAATTTCTTTATGCATTTGGTAGTAGGCCCACTGCATGAC
CACCTGAACAAAGGAGTCTGGATGCAGTCGATGGGTTTTCATAAAGTCCT
TGCCGTAGTCATCGAACGCAGTGAAGGTCACAGTAACGTCAATACCCCTG
TCATCAATATCCTTCTGCACGCGCTTGATCTCGTTCTTGAGCGTATCATC
CAGCTGGAAGTGCAGCTCCTTGACCTCCAAAACATTGCCTTTTTCGGCCT
CTGCCCAGTCTGGCTCTGGCACCTCCAGGAAGCTCAGTTGCATGAATGTG
GCGTAACTTATGCTGACCGTGCCATCGTAGCAGCTGTGCTCACCCGTCCA
GTTGCAGCGTCCGTTGCGGAAGGCGATGATGCTGCTGCTGCGGTCTGCCC
CGCGGGGAA
BO09786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PD | 1857 | CG12428-RD | 917..1854 | 956..19 | 4665 | 99.8 | Minus |
| CG12428-PE | 1857 | CG12428-RE | 917..1854 | 956..19 | 4665 | 99.8 | Minus |
| CG12428-PA | 1857 | CG12428-RA | 917..1854 | 956..19 | 4665 | 99.8 | Minus |
| CG12428-PC | 1857 | CG12428-RC | 917..1854 | 956..19 | 4665 | 99.8 | Minus |
| CG12428-PB | 1857 | CG12428-RB | 917..1854 | 956..19 | 4665 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 1124..2061 | 956..19 | 4675 | 99.9 | Minus |
| CG12428-RA | 2357 | CG12428-RA | 1072..2009 | 956..19 | 4675 | 99.9 | Minus |
| CG12428-RE | 2413 | CG12428-RE | 1128..2065 | 956..19 | 4675 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27703913..27704329 | 149..565 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 27704589..27704849 | 696..956 | 1290 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27704390..27704521 | 566..697 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 27703727..27703856 | 19..148 | 650 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2415 | 948..880 | 117 | 65.2 | Minus |
BO09786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:05 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PD | 916..1857 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:22 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PB | 916..1857 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:45:02 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 1126..2081 | 6..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:48 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 1126..2081 | 6..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:48 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27704390..27704520 | 566..696 | 100 | <- | Plus |
| 3R | 27704590..27704851 | 697..959 | 99 | | Plus |
| 3R | 27703711..27703856 | 6..148 | 96 | <- | Plus |
| 3R | 27703913..27704329 | 149..565 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:45:02 Download gff for
BO09786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23529433..23529578 | 6..148 | 96 | <- | Plus |
| arm_3R | 23529635..23530051 | 149..565 | 100 | <- | Plus |
| arm_3R | 23530112..23530242 | 566..696 | 100 | <- | Plus |
| arm_3R | 23530312..23530573 | 697..959 | 99 | | Plus |
BO09786.5prime Sequence
939 bp (878 high quality bases) assembled on 2006-01-28
> BO09786.5prime
GAAGTTATCAGTCGACATGGACCGGGCTAGTCTATATTTTATGAGCAAGG
ATGATAAGAACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTG
CCAGAGCTTAGGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATT
CGGGACCAAGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCC
AAAACGGAGTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCC
GGCATGAGGAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCT
GATTCGGATGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAAT
TGGAAATGGTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTG
GCGCGCCACATTCACCACTCGCTGGAGTTTTGGGATCTGACTAGAAAGTC
CAGCATCAAACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCG
CGCTGTACAAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAG
GATCATATAGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAG
TCACATGCTTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGC
ACGAGGACGACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAA
AGAGTGCGCAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCAC
CCTGAGCCATGACGAACGCTCCACGTGGGCACGCAACCGCAACCGTTTGA
GGGAAATCTCAGTTGCAAACAAGGAGACGCTGCTTCTGGTGGAGAGCGCA
TGTATGGAGATCTGCTGGTACGAGCAATCGNCCAAGGACTACGAGGAGTC
CTGCCAGCTGGGTCTCTACGGTGATCTCCATTTCCGCTG
BO09786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PD | 1857 | CG12428-RD | 1..923 | 17..939 | 4521 | 99.5 | Plus |
| CG12428-PE | 1857 | CG12428-RE | 1..923 | 17..939 | 4521 | 99.5 | Plus |
| CG12428-PA | 1857 | CG12428-RA | 1..923 | 17..939 | 4521 | 99.5 | Plus |
| CG12428-PC | 1857 | CG12428-RC | 1..923 | 17..939 | 4521 | 99.5 | Plus |
| CG12428-PB | 1857 | CG12428-RB | 1..923 | 17..939 | 4521 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..1130 | 16..939 | 4564 | 99.6 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..1078 | 16..939 | 4564 | 99.6 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..1134 | 16..939 | 4564 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704843..27705391 | 939..391 | 2719 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 394..16 | 1865 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-10 20:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1736..1797 | 797..859 | 115 | 69.2 | Plus |
BO09786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:07 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PD | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:24 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PB | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:38 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1134 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:36 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1134 | 9..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:36 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27705464..27705845 | 9..394 | 98 | | Minus |
| 3R | 27704843..27705387 | 395..939 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:38 Download gff for
BO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23530565..23531109 | 395..939 | 99 | <- | Minus |
| arm_3R | 23531186..23531567 | 9..394 | 98 | | Minus |
BO09786.complete Sequence
1888 bp assembled on 2008-08-14
GenBank Submission: FJ631573
> BO09786.complete
GAAGTTATCAGTCGACATGGACCGGGCTAGTCTATATTTTATGAGCAAGG
ATGATAAGAACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTG
CCAGAGCTTAGGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATT
CGGGACCAAGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCC
AAAACGGAGTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCC
GGCATGAGGAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCT
GATTCGGATGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAAT
TGGAAATGGTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTG
GCGCGCCACATTCACCACTCGCTGGAGTTTTGGGATCTGACTAGAAAGTC
CAGCATCAAACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCG
CGCTGTACAAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAG
GATCATATAGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAG
TCACATGCTTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGC
ACGAGGACGACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAA
AGAGTGCGCAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCAC
CCTGAGCCATGACGAACGCTCCACGTGGGCACGCAACCGCAACCGTTTGA
GGGAAATCTCAGTTGCAAACAAGGAGACGCTGCTTCTGGTGGAGAGCGCA
TGTATGGAGATCTGCTGGTACGAGCAATCGCCCAAGGACTACGAGGAGTC
CTGCCAGCTGGGTCTCTACGGTGATCTCCATTCCCGCTGGGCAGACCGCA
GCAGCAGCATCATCGCCTTCCGCAACGGACGCTGCAACTGGACGGGTGAG
CACAGCTGCTACGATGGCACGGTCAGCATAAGTTACGCCACATTCATGCA
ACTGAGCTTCCTGGAGGTGCCAGAGCCAGACTGGGCAGAGGCCGAAAAAG
GCAATGTTTTGGAGGTCAAGGAGCTGCACTTCCAGCTGGATGATACGCTC
AAGAACGAGATCAAGCGCGTGCAGAAGGATATTGATGACAGGGGTATTGA
CGTTACTGTGACCTTCACTGCGTTCGATGACTACGGCAAGGACTTTATGA
AAACCCATCGACTGCATCCAGACTCCTTTGTTCAGGTGGTCATGCAGTGG
GCCTACTACCAAATGCATAAAGAAATTGCTCCCACATATGAGACTGCTCT
GATGCGACAGTACTACAATGGACGAACAGAGACCCTGCGATCATGCACTT
CCGCTGTGGCTGAATTCCTGAGGGCGTCATCCAACAAGCAGGTTGGCGAT
ATGTCACTGGCCAGGGCGTTCCGTAGGGCAGTCGATGAGCACAAGCACTT
CATGAACGAGGCGCGCAAGGGACACGGCATCGATAGGCACTTGTTTGGCC
TGTGGTGCGCGGCGTATGAAAGCAAAATGGACATTCCCGCCTTCTACGAC
GATCCGATGTACACCAAGAGCGGCGGAGGAGGTAACTTTGTGCTCTCGTC
CAGCACGCTGGGCTTCACGGCCAACGTTGGTTTCGTGGCGCCCATGGTCT
TCGATGGCTATGGCGTCTTTTACTCCATCACCTCGGAAGCTGTGTTCATT
AATACCACCGCCTATCGGGATAGCCTAAAGACAAGCGCTCGCAAGTTCAA
CGACATTTTCAAGGACTCATTCCGCCGCATCAGCGTTCTCCTGGAACAAT
TGGCCAAGGAATCCAAGCTAGCAAGCTTTCTAGACCAT
BO09786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 1857 | CG12428-PB | 1..1854 | 17..1870 | 9240 | 99.9 | Plus |
| CG12428-RA | 1857 | CG12428-PA | 1..1854 | 17..1870 | 9240 | 99.9 | Plus |
| CG12428-RE | 1857 | CG12428-PE | 1..1854 | 17..1870 | 9240 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..2061 | 16..1870 | 9245 | 99.9 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..2009 | 16..1870 | 9245 | 99.9 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..2065 | 16..1870 | 9245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704589..27705391 | 1193..391 | 4015 | 100 | Minus |
| 3R | 32079331 | 3R | 27703913..27704329 | 1740..1324 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 394..16 | 1865 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27704390..27704521 | 1323..1192 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 27703727..27703856 | 1870..1741 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2415 | 941..1009 | 117 | 65.2 | Plus |
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1736..1797 | 797..859 | 115 | 69.2 | Plus |
BO09786.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:24 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 152..2025 | 9..1883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:33 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 212..2065 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:41 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 156..2009 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:28 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 212..2065 | 17..1872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:28 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27703724..27703856 | 1741..1872 | 98 | <- | Minus |
| 3R | 27703913..27704329 | 1324..1740 | 100 | <- | Minus |
| 3R | 27704390..27704520 | 1193..1323 | 100 | <- | Minus |
| 3R | 27704590..27705387 | 395..1192 | 100 | <- | Minus |
| 3R | 27705464..27705841 | 17..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:33 Download gff for
BO09786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23529446..23529578 | 1741..1872 | 98 | <- | Minus |
| arm_3R | 23529635..23530051 | 1324..1740 | 100 | <- | Minus |
| arm_3R | 23530112..23530242 | 1193..1323 | 100 | <- | Minus |
| arm_3R | 23530312..23531109 | 395..1192 | 100 | <- | Minus |
| arm_3R | 23531186..23531563 | 17..394 | 99 | | Minus |
BO09786.pep Sequence
Translation from 16 to 1888
> BO09786.pep
MDRASLYFMSKDDKNTFDFDETLPSLPLPELRDTMERYYSCIQPFGTKEE
LAQARKTIDEFQNGVGAQLHEQLKKRAAGMRNWLGTWWEDYGYHLIRMPL
LPYQLMVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLTRKSSIKPL
SSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLIS
GKGRQFIFDCVHEDDTILSAPEILVALQRVRSILDYEPLGDCVPTLSHDE
RSTWARNRNRLREISVANKETLLLVESACMEICWYEQSPKDYEESCQLGL
YGDLHSRWADRSSSIIAFRNGRCNWTGEHSCYDGTVSISYATFMQLSFLE
VPEPDWAEAEKGNVLEVKELHFQLDDTLKNEIKRVQKDIDDRGIDVTVTF
TAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYETALMRQYY
NGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEAR
KGHGIDRHLFGLWCAAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTLGF
TANVGFVAPMVFDGYGVFYSITSEAVFINTTAYRDSLKTSARKFNDIFKD
SFRRISVLLEQLAKESKLASFLDH
BO09786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PB | 618 | CG12428-PB | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PA | 618 | CG12428-PA | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PE | 618 | CG12428-PE | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PD | 618 | CG12428-PD | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG5265-PA | 643 | CG5265-PA | 35..627 | 8..610 | 517 | 27.1 | Plus |
