Clone Sequence Records
BO09787.3prime Sequence
761 bp (760 high quality bases) assembled on 2006-01-28
> BO09787.3prime
ATGGTCTAGAAAGCTTGCGCACTGCACCTTGCCGAACTGGGCGCGACGCT
CCTGGTACTCGCGGTACTCCTTGTAGTGCATCTGGATCTCCTGCGAACGG
TAGCGCGTTAGCTTTATGGACTTCCTCGTCTCCGGAGTTATGGCAGCCCG
ATAGCCGCCCTTCCGTAGGAGTGAGTCAATGGTCTGCAGCTGGTCCCAGC
CCTGTTCGGTGGCCACCTGCGGCAAATAGGTGGCTGTGCGCTTGCAGCCG
CGTTCTGTGAGGAACTCGATGCGGATGCCATGGACGCCCAGTTGCCAGTC
CAGGTGGCCCTGAGCCTCCTCGAAGTTCTGCAGGATCGAGACCGAGACAG
TTAGCCGTGGCAACTCATCTCTAGAGATAGGTGCAAATCTAGAGTCCTTA
AAGGCGCTGGTCAAGGCGTACTCCCGAAGACCATGGTGCAGTTCCATTGC
ACTAAAAGTACCAATGCAGCCACGCAGCCTCTTGTCACGCCCAATCTTCC
AGGTGACAAAGAGTGGGTAGGCGTCGTTGCTAAACACCGGCACCGATGGA
CCATCGACGTTGTTCAGCTCACAGTCAAGCACCTCGAAGCAGAACAGGCA
CATGTCTGGCACAGCGACGGTCTTCATGCCATGGCCGTTGGAGAACCGTT
GCGGCTGGTGCACCATCTGCTGGTGCTGGTATTCCGGATCTCCGTTGCTG
GAGTGCGGCTGCTGCTGCTGGTAGTTGTTGTAGTGGGAGTTGGACATGTC
GACTGATAACT
BO09787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-PB | 732 | CG5902-RB | 1..729 | 747..19 | 3620 | 99.8 | Minus |
CG5902-PA | 732 | CG5902-RA | 1..729 | 747..19 | 3620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-RC | 1953 | CG5902-RC | 642..1371 | 748..19 | 3635 | 99.9 | Minus |
CG5902-RA | 1956 | CG5902-RA | 645..1374 | 748..19 | 3635 | 99.9 | Minus |
CG5902-RB | 1725 | CG5902-RB | 414..1143 | 748..19 | 3635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23987427..23988156 | 748..19 | 3635 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 04:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 733..648 | 156 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6925 | 730..643 | 155 | 69.2 | Minus |
BO09787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:08 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-PA | 1..732 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:25 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-PA | 1..732 | 15..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:02:14 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 406..1146 | 15..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:28 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 406..1146 | 15..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:28 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23987419..23988159 | 15..755 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:02:14 Download gff for
BO09787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19813141..19813881 | 15..755 | 99 | | Minus |
BO09787.5prime Sequence
761 bp (760 high quality bases) assembled on 2006-01-28
> BO09787.5prime
GAAGTTATCAGTCGACATGTCCAACTCCCACTACAACAACTACCAGCAGC
AGCAGCCGCACTCCAGCAACGGAGATCCGGAATACCAGCACCAGCAGATG
GTGCACCAGCCGCAACGGTTCTCCAACGGCCATGGCATGAAGACCGTCGC
TGTGCCAGACATGTGCCTGTTCTGCTTCGAGGTGCTTGACTGTGAGCTGA
ACAACGTCGATGGTCCATCGGTGCCGGTGTTTAGCAACGACGCCTACCCA
CTCTTTGTCACCTGGAAGATTGGGCGTGACAAGAGGCTGCGTGGCTGCAT
TGGTACTTTTAGTGCAATGGAACTGCACCATGGTCTTCGGGAGTACGCCT
TGACCAGCGCCTTTAAGGACTCTAGATTTGCACCTATCTCTAGAGATGAG
TTGCCACGGCTAACTGTCTCGGTCTCGATCCTGCAGAACTTCGAGGAGGC
TCAGGGCCACCTGGACTGGCAACTGGGCGTCCATGGCATCCGCATCGAGT
TCCTCACAGAACGCGGCTGCAAGCGCACAGCCACCTATTTGCCGCAGGTG
GCCACCGAACAGGGCTGGGACCAGCTGCAGACCATTGACTCACTCCTACG
GAAGGGCGGCTATCGGGCTGCCATAACTCCGGAGACGAGGAAGTCCATAA
AGCTAACGCGCTACCGTTCGCAGGAGATCCAGATGCACTACAAGGAGTAC
CGCGAGTACCAGGAGCGTCGCGCCCAGTTCGGCAAGGTGCAGTGCGCAAG
CTTTCTAGACC
BO09787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-PB | 732 | CG5902-RB | 1..729 | 17..745 | 3620 | 99.8 | Plus |
CG5902-PA | 732 | CG5902-RA | 1..729 | 17..745 | 3620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-RC | 1953 | CG5902-RC | 642..1371 | 16..745 | 3635 | 99.9 | Plus |
CG5902-RA | 1956 | CG5902-RA | 645..1374 | 16..745 | 3635 | 99.9 | Plus |
CG5902-RB | 1725 | CG5902-RB | 414..1143 | 16..745 | 3635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23987427..23988156 | 16..745 | 3635 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 02:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 31..116 | 156 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6925 | 34..121 | 155 | 69.2 | Plus |
BO09787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:09 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-PA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:26 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-PA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:39 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 406..1146 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:20 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 406..1146 | 9..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:20 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23987419..23988159 | 9..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:39 Download gff for
BO09787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19813141..19813881 | 9..749 | 99 | | Plus |
BO09787.complete Sequence
763 bp (763 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631574
> BO09787.complete
GAAGTTATCAGTCGACATGTCCAACTCCCACTACAACAACTACCAGCAGC
AGCAGCCGCACTCCAGCAACGGAGATCCGGAATACCAGCACCAGCAGATG
GTGCACCAGCCGCAACGGTTCTCCAACGGCCATGGCATGAAGACCGTCGC
TGTGCCAGACATGTGCCTGTTCTGCTTCGAGGTGCTTGACTGTGAGCTGA
ACAACGTCGATGGTCCATCGGTGCCGGTGTTTAGCAACGACGCCTACCCA
CTCTTTGTCACCTGGAAGATTGGGCGTGACAAGAGGCTGCGTGGCTGCAT
TGGTACTTTTAGTGCAATGGAACTGCACCATGGTCTTCGGGAGTACGCCT
TGACCAGCGCCTTTAAGGACTCTAGATTTGCACCTATCTCTAGAGATGAG
TTGCCACGGCTAACTGTCTCGGTCTCGATCCTGCAGAACTTCGAGGAGGC
TCAGGGCCACCTGGACTGGCAACTGGGCGTCCATGGCATCCGCATCGAGT
TCCTCACAGAACGCGGCTGCAAGCGCACAGCCACCTATTTGCCGCAGGTG
GCCACCGAACAGGGCTGGGACCAGCTGCAGACCATTGACTCACTCCTACG
GAAGGGCGGCTATCGGGCTGCCATAACTCCGGAGACGAGGAAGTCCATAA
AGCTAACGCGCTACCGTTCGCAGGAGATCCAGATGCACTACAAGGAGTAC
CGCGAGTACCAGGAGCGTCGCGCCCAGTTCGGCAAGGTGCAGTGCGCAAG
CTTTCTAGACCAT
BO09787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-RC | 732 | CG5902-PC | 1..729 | 17..745 | 3630 | 99.9 | Plus |
CG5902-RA | 732 | CG5902-PA | 1..729 | 17..745 | 3630 | 99.9 | Plus |
CG5902-RB | 732 | CG5902-PB | 1..729 | 17..745 | 3630 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-RC | 1953 | CG5902-RC | 642..1371 | 16..745 | 3635 | 99.9 | Plus |
CG5902-RA | 1956 | CG5902-RA | 645..1374 | 16..745 | 3635 | 99.9 | Plus |
CG5902-RB | 1725 | CG5902-RB | 414..1143 | 16..745 | 3635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23987427..23988156 | 16..745 | 3635 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 01:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 31..116 | 156 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6925 | 34..121 | 155 | 69.2 | Plus |
BO09787.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:25 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:24 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RA | 606..1346 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:16 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 415..1143 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:25 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RA | 606..1346 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:03 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5902-RB | 415..1143 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:03 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23987428..23988156 | 17..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:16 Download gff for
BO09787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19813150..19813878 | 17..747 | 99 | | Plus |
BO09787.pep Sequence
Translation from 16 to 763
> BO09787.pep
MSNSHYNNYQQQQPHSSNGDPEYQHQQMVHQPQRFSNGHGMKTVAVPDMC
LFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKIGRDKRLRGCIGTFSA
MELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLD
WQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYR
AAITPETRKSIKLTRYRSQEIQMHYKEYREYQERRAQFGKVQCASFLDH
BO09787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5902-PC | 243 | CG5902-PC | 1..243 | 1..243 | 1308 | 100 | Plus |
CG5902-PA | 243 | CG5902-PA | 1..243 | 1..243 | 1308 | 100 | Plus |
CG5902-PB | 243 | CG5902-PB | 1..243 | 1..243 | 1308 | 100 | Plus |