Clone Sequence Records
BO09790.3prime Sequence
945 bp (852 high quality bases) assembled on 2006-01-28
> BO09790.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCAGCCCCCGGGTGTCCTTCAATGGCT
CCAGGGGCTGCAGGTTGACCGTCTTGTAGCCTCGATCCCGCCGGAACCAG
AGCCAGTTGTCCCCGTTGAAATAGTCCTCGATGTGCTCCAGGCTGCGGCC
CTTCGTCTCCGGCTGGAAAAGGCACATAAAGGCAGTGAGCAGGAAACTGG
ACACGCCGAAGACCAGGAACACGCCGCGCATCTTGAGCATGGCCTGCAAA
GCGGGAAACTTCTTCGCGAAGATGAACAGAGCGACGTTCATGGAGGCAAA
CACTCCGCCGGCAGTCCGTCCGCGTATCCTAGCCGGGAAGAGCTCGCCGA
TCATAATGCCGGGCATCACCATCAGAGCCGTGTTGAAGATGATGTAGCCC
AAGAGACAGCCGGCACCAACGAATACGTCGTACGACATTTTCGGTTGATC
GAATCTGGCATACTGATAGACACTGAGCACCAGGCAGAACAAGCCGGAGC
CGATTCCCGACACTATCATGATCCTGCGGCGGCGAACGAAGATCAGGACT
ACGCAGAAGACCATGCAGCAGATCACCCGGACAACTGCCGTCGCAATGGC
CGCCTGCTTGGAGTCGAACTCCGCTCCGAACTCCGAGATCATGTCCACGG
CATAGAAGATCACGATGAACGTGCCGGAGAACATCTGCAGCAGCGAGAAC
ACGATCACAATGACCAGCGGCTTGATGGCCACGCGCTGGCAGCACAGCTG
GAAGATGTTCTCGTTCGTCTTGGTGGTCACCCGCTCCTTGGCCAGCCTCT
GCTTCATATCATTCAGCTCCTTCTGCGCACTGATCTCGCTGCCCCGCANG
AACGAGAGGGCCTGCAGCGCACGCTTCTCGTGGCCATTGCGGAGTACCAG
GCCGGAGTCTCCGGTATAACGAGATAGACACCATGGACAGCAGGG
BO09790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-PB | 1602 | CG4797-RB | 722..1599 | 896..19 | 4371 | 99.8 | Minus |
| CG4797-PA | 1383 | CG4797-RA | 503..1380 | 896..19 | 4371 | 99.8 | Minus |
| CG4797-PB | 1602 | CG4797-RB | 671..698 | 945..918 | 140 | 100 | Minus |
| CG4797-PA | 1383 | CG4797-RA | 452..479 | 945..918 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 934..1862 | 945..19 | 4584 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812429..23813357 | 19..945 | 4534 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:05:55 has no hits.
BO09790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:12 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-PB | 671..1602 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:30 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-PA | 452..1383 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:24 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 934..1862 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:49 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 934..1862 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:49 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812429..23813357 | 19..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:24 Download gff for
BO09790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19699952..19700880 | 19..945 | 99 | | Plus |
BO09790.5prime Sequence
934 bp (766 high quality bases) assembled on 2006-01-28
> BO09790.5prime
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCNAGCAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGCTCCGGCTTGTTCTGCCTG
BO09790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-PB | 1602 | CG4797-RB | 219..1137 | 16..934 | 4401 | 99.1 | Plus |
| CG4797-PA | 1383 | CG4797-RA | 1..918 | 17..934 | 4396 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 482..1400 | 16..934 | 4479 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812891..23813507 | 934..318 | 3044 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 322..109 | 995 | 97.7 | Minus |
| 2R | 25286936 | 2R | 23814596..23814690 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:34:38 has no hits.
BO09790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:13 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:32 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-PB | 213..1137 | 7..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:21:01 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 476..1400 | 7..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:50:45 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 476..1400 | 7..934 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:50:45 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23814596..23814696 | 7..110 | 96 | | Minus |
| 2R | 23812891..23813505 | 320..934 | 99 | <- | Minus |
| 2R | 23814325..23814533 | 111..319 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:21:01 Download gff for
BO09790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19702119..19702219 | 7..110 | 96 | | Minus |
| arm_2R | 19700414..19701028 | 320..934 | 99 | <- | Minus |
| arm_2R | 19701848..19702056 | 111..319 | 97 | <- | Minus |
BO09790.complete Sequence
1414 bp (1414 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631575
> BO09790.complete
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCAAGCAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGCTCCGGCTTGTTCTGCCTGGTGCTCAGTGTCTATC
AGTATGCCAGATTCGATCAACCGAAAATGTCGTACGACGTATTCGTTGGT
GCCGGCTGTCTCTTGGGCTACATCATCTTCAACACGGCTCTGATGGTGAT
GCCCGGCATTATGATCGGCGAGCTCTTCCCGGCTAGGATACGCGGACGGA
CTGCCGGCGGAGTGTTTGCCTCCATGAACGTCGCTCTGTTCATCTTCGCG
AAGAAGTTTCCCGCTTTGCAGGCCATGCTCAAGATGCGCGGCGTGTTCCT
GGTCTTCGGCGTGTCCAGTTTCCTGCTCACTGCCTTTATGTGCCTTTTCC
AGCCGGAGACGAAGGGCCGCAGCCTGGAGCACATCGAGGACTATTTCAAC
GGGGACAACTGGCTCTGGTTCCGGCGGGATCGAGGCTACAAGACGGTCAA
CCTGCAGCCCCTGGAGCCATTGAAGGACACCCGGGGGCTGGAGGCCGCAA
GCTTTCTAGACCAT
BO09790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 1602 | CG4797-PB | 219..1599 | 16..1396 | 6800 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 482..1862 | 16..1396 | 6800 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812429..23813507 | 1396..318 | 5365 | 99.8 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 322..109 | 995 | 97.7 | Minus |
| 2R | 25286936 | 2R | 23814596..23814690 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:09 has no hits.
BO09790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:26 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 213..1602 | 7..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:26 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RA | 315..1701 | 7..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:21 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 483..1862 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:26 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RA | 315..1701 | 7..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:15 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 483..1862 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:15 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812427..23813505 | 320..1398 | 99 | <- | Minus |
| 2R | 23814325..23814533 | 111..319 | 97 | <- | Minus |
| 2R | 23814596..23814689 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:21 Download gff for
BO09790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19699950..19701028 | 320..1398 | 99 | <- | Minus |
| arm_2R | 19701848..19702056 | 111..319 | 97 | <- | Minus |
| arm_2R | 19702119..19702212 | 17..110 | 100 | | Minus |
BO09790.pep Sequence
Translation from 16 to 1414
> BO09790.pep
MPIGFSAILLPQLMDNNSTEIPIDVETGSWIASVHSLATPFGSLLSGPLA
DYLGRRRTLILSVIPLLLGWSTLAIAKSIKVVIFARFLCGFATGILGGPG
QVYIAETAEPNLRSLLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVL
PLLSMVSISFIPETPAWLLRNGHEKRALQALSFLRGSEISAQKELNDMKQ
RLAKERVTTKTNENIFQLCCQRVAIKPLVIVIVFSLLQMFSGTFIVIFYA
VDMISEFGAEFDSKQAAIATAVVRVICCMVFCVVLIFVRRRRIMIVSGIG
SGLFCLVLSVYQYARFDQPKMSYDVFVGAGCLLGYIIFNTALMVMPGIMI
GELFPARIRGRTAGGVFASMNVALFIFAKKFPALQAMLKMRGVFLVFGVS
SFLLTAFMCLFQPETKGRSLEHIEDYFNGDNWLWFRRDRGYKTVNLQPLE
PLKDTRGLEAASFLDH
BO09790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-PB | 533 | CG4797-PB | 74..533 | 1..460 | 2347 | 100 | Plus |
| Tret1-2-PA | 488 | CG8234-PA | 48..466 | 5..424 | 565 | 31.4 | Plus |
| Tret1-1-PB | 489 | CG30035-PB | 48..485 | 5..449 | 554 | 30.3 | Plus |
| Tret1-1-PA | 857 | CG30035-PA | 416..853 | 5..449 | 554 | 30.3 | Plus |
| CG8249-PC | 521 | CG8249-PC | 61..496 | 1..427 | 453 | 28.9 | Plus |
