Clone BO09794 Report

Search the DGRC for BO09794

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG7381-RB
Protein status:BO09794.pep: Imported from assembly
Sequenced Size:1909

Clone Sequence Records

BO09794.3prime Sequence

934 bp (822 high quality bases) assembled on 2006-01-28

> BO09794.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGGCCTGCTTTATGGCCGCACTGGTGA
TAAGGAAAGCGGAGCCAATCAGCATGAAGGTGATGATTTTGAGAGCACTT
GGTCTACCGGAAGAATTTTTCTTATTGGGCATCACGCGAATGCATTGATT
CTGATTGGCGTTCGCCGAGTAGCCCAGCTTGCACTGGCACACGGAGTTGC
GGCACTCGACATTCTCGGGATCCTTTTCTACATAGCACTCGGTGGCCTTG
GTGCACGACTCTCCCAGCTCTCGCTTCGTCTCACAGACTCCGTTCTTAGC
GTGCTGCTCATCGTTGCATCCACACTTGCCCTCCGAATTGCAGCTCGCCA
GGAGCGGCTTGCACTGCTCATCCTCGACGCACTCGTCCTCCAGCTCCTCG
GCCTCTTTTAGGCACTCATCCTTAAAGTGCACGTATCCCTTTCGGCACTG
GCAGGTGCGCGACTGATCCTCCTCGTCCTTCTCCTGGCATTCGGTGTTCT
CAGGTATGCAGTCATCCTCCACCGAGCAGTCGGCACCGATGCCACGCATA
CACTGATCGTCCTTCTCAAAGTAGTTGTCCGCACAAACGCACACGCGATT
GGAGCAGACGGAGTGATCCACAGGACAGCCATCGTTGGACTCACACTCGG
CTCCCAGGCCACGTTTGTATTCGCAGAGCTGCTTGATGGCATCGTAGAGG
GCGTACTCCTCGCAAGTGCACCTCCTCGGAATCTCCGGGTGGCAATAGGA
GGCGCCAAATGGACTGCATTGGCTGTTCGAGGTGCANGATAAGTGGTATT
GAATGGGTTTTCTGCAATTGCGCAGATCCCGCTCGTAGAAATAATTCTTT
TGGCAATTGCAAGTTTTGGTNCACTGATCGAACTCGTACTCGCACTCATC
CGTGCTCTCCGGCATTTCCCCCAGNTCGGGCAAA

BO09794.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-PB 1878 CG7381-RB 965..1875 929..19 4323 98.9 Minus
CG7381-PA 2139 CG7381-RA 1226..2136 929..19 4323 98.9 Minus
CG7381-PC 1653 CG7381-RC 740..1650 929..19 4323 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-RF 2603 CG7381-RF 1282..2192 929..19 4417 98.9 Minus
CG7381-RE 2948 CG7381-RE 1627..2537 929..19 4417 98.9 Minus
CG7381-RD 3098 CG7381-RD 1777..2687 929..19 4417 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12968763..12969167 402..806 1969 99 Plus
3R 32079331 3R 12968345..12968499 117..271 775 100 Plus
3R 32079331 3R 12968562..12968694 270..402 650 99.2 Plus
3R 32079331 3R 12969231..12969348 807..924 534 96.6 Plus
3R 32079331 3R 12968186..12968283 19..116 490 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:21:09 has no hits.

BO09794.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:21 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-PC 739..1653 18..931 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:41 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-PC 739..1653 18..931 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:55 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-RD 1776..2687 19..931 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:00 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-RD 1776..2687 19..931 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:00 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12968562..12968693 270..401 99 <- Plus
3R 12968186..12968283 19..116 100 <- Plus
3R 12968345..12968497 117..269 100 <- Plus
3R 12968763..12969167 402..806 99 <- Plus
3R 12969231..12969351 807..927 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:55 Download gff for BO09794.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8793908..8794005 19..116 100 <- Plus
arm_3R 8794067..8794219 117..269 100 <- Plus
arm_3R 8794284..8794415 270..401 99 <- Plus
arm_3R 8794485..8794889 402..806 99 <- Plus
arm_3R 8794953..8795073 807..927 95   Plus

BO09794.5prime Sequence

841 bp (767 high quality bases) assembled on 2006-01-28

> BO09794.5prime
GAAGTTATCAGTCGACATGCCAACGGGGGCCAGTTGTAAAGCCGGGGTCT
GCGATTGCGCCGATGGCCAGAACTATCTGCGTGGCAAGTGTCGCCCACTG
AACGGACTCGGCGAGTCCTGCGAAACGGACTTGGACTGCTACTTTGGCTA
CGATCGTGCGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCTGTGCAAATG
GCTATTATAACAGATATGGAAACATCTGCCGTCGCAAATCAATGGAAGAA
AACGATGCCTGCGTCGTTAACGCGGACTGTGATGAACTGGGCGCCGGTGT
CGAGTGCGTTGGCCTAGTATGCACCTATGTGGACGAGATCACAACGACTC
CGGGTGGCGAGACCGAGGAAACGGAGACCACCAATCCGGGCTCGCCAGAG
GATGATGATTCAACCACAGCCGAGGCGATCACCGAGACTGCCGATCCGGA
ACAGGAGACCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGGCCTTTGTAC
ACGCCCCCCCGCCCACTCACAGCGATGCCGCCGCCCAGGTGTCCTTCGCC
CAGCTCACCAATGGCGACACCGAGCCGCTCATCTCGCCCCGATCCCACGA
GATTGCCGTCCAGACGAGCATCGAGAAGTACGAGCTGAGGGAGGTGGGAC
GAAGTGTGCGCAATGCGGCCACCGCCACCACCACAACGACAGCCACCGCC
TCCACGAGCACCAGTAGCAGGCGCAACTCCAGCCGCAACCAGAGACACGC
CCATGGCCAAAGACGCCGCTTGCCCGCCCTCTTCCGATTCGATGACGAGG
ATATAAAGACCTACTCCACGCTGGGTTCCAGCCGCGATGAC

BO09794.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-PB 1878 CG7381-RB 1..825 17..841 4100 99.8 Plus
CG7381-PA 2139 CG7381-RA 262..1086 17..841 4100 99.8 Plus
CG7381-PC 1653 CG7381-RC 1..600 242..841 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-RE 2948 CG7381-RE 663..1487 17..841 4110 99.9 Plus
CG7381-RD 3098 CG7381-RD 813..1637 17..841 4110 99.9 Plus
CG7381-RA 2606 CG7381-RA 321..1145 17..841 4110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12969653..12970249 841..245 2985 100 Minus
3R 32079331 3R 12970323..12970441 245..127 580 99.2 Minus
3R 32079331 3R 12970510..12970621 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:11:48 has no hits.

BO09794.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:22 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-PB 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:43 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-PA 255..1086 9..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:46:48 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 314..1145 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:34 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 314..1145 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:34 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12970511..12970628 9..127 96   Minus
3R 12969653..12970248 246..841 100 <- Minus
3R 12970323..12970440 128..245 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:46:48 Download gff for BO09794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8795375..8795970 246..841 100 <- Minus
arm_3R 8796045..8796162 128..245 99 <- Minus
arm_3R 8796233..8796350 9..127 96   Minus

BO09794.complete Sequence

1909 bp assembled on 2008-08-14

GenBank Submission: FJ631576

> BO09794.complete
GAAGTTATCAGTCGACATGCCAACGGGGGCCAGTTGTAAAGCCGGGGTCT
GCGATTGCGCCGATGGCCAGAACTATCTGCGTGGCAAGTGTCGCCCACTG
AACGGACTCGGCGAGTCCTGCGAAACGGACTTGGACTGCTACTTTGGCTA
CGATCGTGCGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCTGTGCAAATG
GCTATTATAACAGATATGGAAACATCTGCCGTCGCAAATCAATGGAAGAA
AACGATGCCTGCGTCGTTAACGCGGACTGTGATGAACTGGGCGCCGGTGT
CGAGTGCGTTGGCCTAGTATGCACCTATGTGGACGAGATCACAACGACTC
CGGGTGGCGAGACCGAGGAAACGGAGACCACCAATCCGGGCTCGCCAGAG
GATGATGATTCAACCACAGCCGAGGCGATCACCGAGACTGCCGATCCGGA
ACAGGAGACCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGGCCTTTGTAC
ACGCCCCCCCGCCCACTCACAGCGATGCCGCCGCCCAGGTGTCCTTCGCC
CAGCTCACCAATGGCGACACCGAGCCGCTCATCTCGCCCCGATCCCACGA
GATTGCCGTCCAGACGAGCATCGAGAAGTACGAGCTGAGGGAGGTGGGAC
GAAGTGTGCGCAATGCGGCCACCGCCACCACCACAACGACAGCCACCGCC
TCCACGAGCACCAGTAGCAGGCGCAACTCCAGCCGCAACCAGAGACACGC
CCATGGCCAAAGACGCCGCTTGCCCGCCCTCTTCCGATTCGATGACGAGG
ATATAAAGACCTACTCCACGCTGGGTTCCAGCCGCGATGACGACGATGCC
GATGAGAAGAAGTATGGCAGCAGCTGCACGGATAATGGAAAGACATGCTC
GGGTCTGCCGCACTCGATTTGTTCCAAGAATATTTGCCTATGTCGCCAGG
GTTACTATGCCCGCAATGGAAAATGTTTTGCCGAACTGGGGGAAATTGCG
GAGAGCACGGATGAGTGCGAGTACGAGTTCGATCAGTTGACCAAAACTTG
CAATTGCCAAAAGAATTATTTCTACGAGCGGGATCTGCGCAATTGCAGAA
AACCCATTCAATACCACTTATCCTGCACCTCGAACAGCCAATGCAGTCCA
TTTGGCGCCTCCTATTGCCACCCGGAGATTCCGAGGAGGTGCACTTGCGA
GGAGTACGCCCTCTACGATGCCATCAAGCAGCTCTGCGAATACAAACGTG
GCCTGGGAGCCGAGTGTGAGTCCAACGATGGCTGTCCTGTGGATCACTCC
GTCTGCTCCAATCGCGTGTGCGTTTGTGCGGACAACTACTTTGAGAAGGA
CGATCAGTGTATGCGTGGCATCGGTGCCGACTGCTCGGTGGAGGATGACT
GCATACCTGAGAACACCGAATGCCAGGAGAAGGACGAGGAGGATCAGTCG
CGCACCTGCCAGTGCCGAAAGGGATACGTGCACTTTAAGGATGAGTGCCT
AAAAGAGGCCGAGGAGCTGGAGGACGAGTGCGTCGAGGATGAGCAGTGCA
AGCCGCTCCTGGCGAGCTGCAATTCGGAGGGCAAGTGTGGATGCAACGAT
GAGCAGCACGCTAAGAACGGAGTCTGTGAGACGAAGCGAGAGCTGGGAGA
GTCGTGCACCAAGGCCACCGAGTGCTATGTAGAAAAGGATCCCGAGAATG
TCGAGTGCCGCAACTCCGTGTGCCAGTGCAAGCTGGGCTACTCGGCGAAC
GCCAATCAGAATCAATGCATTCGCGTGATGCCCAATAAGAAAAATTCTTC
CGGTAGACCAAGTGCTCTCAAAATCATCACCTTCATGCTGATTGGCTCCG
CTTTCCTTATCACCAGTGCGGCCATAAAGCAGGCCTACTACGCAAGCTTT
CTAGACCAT

BO09794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-RE 1878 CG7381-PE 1..1875 17..1891 9300 99.7 Plus
CG7381-RD 1878 CG7381-PD 1..1875 17..1891 9300 99.7 Plus
CG7381-RA 2139 CG7381-PA 262..2136 17..1891 9300 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-RE 2948 CG7381-RE 663..2537 17..1891 9300 99.7 Plus
CG7381-RD 3098 CG7381-RD 813..2687 17..1891 9300 99.7 Plus
CG7381-RA 2606 CG7381-RA 321..2195 17..1891 9300 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12969631..12970249 863..245 3095 100 Minus
3R 32079331 3R 12968763..12969167 1508..1104 1980 99.3 Minus
3R 32079331 3R 12968345..12968499 1793..1639 775 100 Minus
3R 32079331 3R 12968562..12968694 1640..1508 650 99.2 Minus
3R 32079331 3R 12969231..12969351 1103..983 605 100 Minus
3R 32079331 3R 12969421..12969540 983..864 600 100 Minus
3R 32079331 3R 12970323..12970441 245..127 580 99.2 Minus
3R 32079331 3R 12970510..12970621 128..17 560 100 Minus
3R 32079331 3R 12968186..12968283 1891..1794 490 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:12:52 has no hits.

BO09794.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:11 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 313..2194 9..1891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:41 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 321..2195 17..1893 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:12 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 320..2194 17..1893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:24 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7381-RA 321..2195 17..1893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:24 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12968184..12968283 1794..1893 98 <- Minus
3R 12968345..12968497 1641..1793 100 <- Minus
3R 12968562..12968693 1509..1640 99 <- Minus
3R 12968763..12969167 1104..1508 99 <- Minus
3R 12969231..12969350 984..1103 100 <- Minus
3R 12969421..12969540 864..983 100 <- Minus
3R 12969631..12970248 246..863 100 <- Minus
3R 12970323..12970440 128..245 99 <- Minus
3R 12970511..12970621 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:41 Download gff for BO09794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8793906..8794005 1794..1893 98 <- Minus
arm_3R 8794067..8794219 1641..1793 100 <- Minus
arm_3R 8794284..8794415 1509..1640 99 <- Minus
arm_3R 8794485..8794889 1104..1508 99 <- Minus
arm_3R 8794953..8795072 984..1103 100 <- Minus
arm_3R 8795143..8795262 864..983 100 <- Minus
arm_3R 8795353..8795970 246..863 100 <- Minus
arm_3R 8796045..8796162 128..245 99 <- Minus
arm_3R 8796233..8796343 17..127 100   Minus

BO09794.pep Sequence

Translation from 16 to 1909

> BO09794.pep
MPTGASCKAGVCDCADGQNYLRGKCRPLNGLGESCETDLDCYFGYDRASV
SCQQNVCGCANGYYNRYGNICRRKSMEENDACVVNADCDELGAGVECVGL
VCTYVDEITTTPGGETEETETTNPGSPEDDDSTTAEAITETADPEQETAF
SSRRQLTKAFVHAPPPTHSDAAAQVSFAQLTNGDTEPLISPRSHEIAVQT
SIEKYELREVGRSVRNAATATTTTTATASTSTSSRRNSSRNQRHAHGQRR
RLPALFRFDDEDIKTYSTLGSSRDDDDADEKKYGSSCTDNGKTCSGLPHS
ICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYEFDQLTKTCNCQKN
YFYERDLRNCRKPIQYHLSCTSNSQCSPFGASYCHPEIPRRCTCEEYALY
DAIKQLCEYKRGLGAECESNDGCPVDHSVCSNRVCVCADNYFEKDDQCMR
GIGADCSVEDDCIPENTECQEKDEEDQSRTCQCRKGYVHFKDECLKEAEE
LEDECVEDEQCKPLLASCNSEGKCGCNDEQHAKNGVCETKRELGESCTKA
TECYVEKDPENVECRNSVCQCKLGYSANANQNQCIRVMPNKKNSSGRPSA
LKIITFMLIGSAFLITSAAIKQAYYASFLDH

BO09794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7381-PE 625 CG7381-PE 1..625 1..625 3428 100 Plus
CG7381-PD 625 CG7381-PD 1..625 1..625 3428 100 Plus
CG7381-PA 712 CG7381-PA 88..712 1..625 3428 100 Plus
CG7381-PB 625 CG7381-PB 1..625 1..625 3428 100 Plus
CG7381-PF 711 CG7381-PF 88..711 1..625 3411 99.8 Plus