Clone Sequence Records
BO09794.3prime Sequence
934 bp (822 high quality bases) assembled on 2006-01-28
> BO09794.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGGCCTGCTTTATGGCCGCACTGGTGA
TAAGGAAAGCGGAGCCAATCAGCATGAAGGTGATGATTTTGAGAGCACTT
GGTCTACCGGAAGAATTTTTCTTATTGGGCATCACGCGAATGCATTGATT
CTGATTGGCGTTCGCCGAGTAGCCCAGCTTGCACTGGCACACGGAGTTGC
GGCACTCGACATTCTCGGGATCCTTTTCTACATAGCACTCGGTGGCCTTG
GTGCACGACTCTCCCAGCTCTCGCTTCGTCTCACAGACTCCGTTCTTAGC
GTGCTGCTCATCGTTGCATCCACACTTGCCCTCCGAATTGCAGCTCGCCA
GGAGCGGCTTGCACTGCTCATCCTCGACGCACTCGTCCTCCAGCTCCTCG
GCCTCTTTTAGGCACTCATCCTTAAAGTGCACGTATCCCTTTCGGCACTG
GCAGGTGCGCGACTGATCCTCCTCGTCCTTCTCCTGGCATTCGGTGTTCT
CAGGTATGCAGTCATCCTCCACCGAGCAGTCGGCACCGATGCCACGCATA
CACTGATCGTCCTTCTCAAAGTAGTTGTCCGCACAAACGCACACGCGATT
GGAGCAGACGGAGTGATCCACAGGACAGCCATCGTTGGACTCACACTCGG
CTCCCAGGCCACGTTTGTATTCGCAGAGCTGCTTGATGGCATCGTAGAGG
GCGTACTCCTCGCAAGTGCACCTCCTCGGAATCTCCGGGTGGCAATAGGA
GGCGCCAAATGGACTGCATTGGCTGTTCGAGGTGCANGATAAGTGGTATT
GAATGGGTTTTCTGCAATTGCGCAGATCCCGCTCGTAGAAATAATTCTTT
TGGCAATTGCAAGTTTTGGTNCACTGATCGAACTCGTACTCGCACTCATC
CGTGCTCTCCGGCATTTCCCCCAGNTCGGGCAAA
BO09794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-PB | 1878 | CG7381-RB | 965..1875 | 929..19 | 4323 | 98.9 | Minus |
CG7381-PA | 2139 | CG7381-RA | 1226..2136 | 929..19 | 4323 | 98.9 | Minus |
CG7381-PC | 1653 | CG7381-RC | 740..1650 | 929..19 | 4323 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-RF | 2603 | CG7381-RF | 1282..2192 | 929..19 | 4417 | 98.9 | Minus |
CG7381-RE | 2948 | CG7381-RE | 1627..2537 | 929..19 | 4417 | 98.9 | Minus |
CG7381-RD | 3098 | CG7381-RD | 1777..2687 | 929..19 | 4417 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12968763..12969167 | 402..806 | 1969 | 99 | Plus |
3R | 32079331 | 3R | 12968345..12968499 | 117..271 | 775 | 100 | Plus |
3R | 32079331 | 3R | 12968562..12968694 | 270..402 | 650 | 99.2 | Plus |
3R | 32079331 | 3R | 12969231..12969348 | 807..924 | 534 | 96.6 | Plus |
3R | 32079331 | 3R | 12968186..12968283 | 19..116 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:09 has no hits.
BO09794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:21 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-PC | 739..1653 | 18..931 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:41 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-PC | 739..1653 | 18..931 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:55 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RD | 1776..2687 | 19..931 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:00 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RD | 1776..2687 | 19..931 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:00 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12968562..12968693 | 270..401 | 99 | <- | Plus |
3R | 12968186..12968283 | 19..116 | 100 | <- | Plus |
3R | 12968345..12968497 | 117..269 | 100 | <- | Plus |
3R | 12968763..12969167 | 402..806 | 99 | <- | Plus |
3R | 12969231..12969351 | 807..927 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:55 Download gff for
BO09794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8793908..8794005 | 19..116 | 100 | <- | Plus |
arm_3R | 8794067..8794219 | 117..269 | 100 | <- | Plus |
arm_3R | 8794284..8794415 | 270..401 | 99 | <- | Plus |
arm_3R | 8794485..8794889 | 402..806 | 99 | <- | Plus |
arm_3R | 8794953..8795073 | 807..927 | 95 | | Plus |
BO09794.5prime Sequence
841 bp (767 high quality bases) assembled on 2006-01-28
> BO09794.5prime
GAAGTTATCAGTCGACATGCCAACGGGGGCCAGTTGTAAAGCCGGGGTCT
GCGATTGCGCCGATGGCCAGAACTATCTGCGTGGCAAGTGTCGCCCACTG
AACGGACTCGGCGAGTCCTGCGAAACGGACTTGGACTGCTACTTTGGCTA
CGATCGTGCGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCTGTGCAAATG
GCTATTATAACAGATATGGAAACATCTGCCGTCGCAAATCAATGGAAGAA
AACGATGCCTGCGTCGTTAACGCGGACTGTGATGAACTGGGCGCCGGTGT
CGAGTGCGTTGGCCTAGTATGCACCTATGTGGACGAGATCACAACGACTC
CGGGTGGCGAGACCGAGGAAACGGAGACCACCAATCCGGGCTCGCCAGAG
GATGATGATTCAACCACAGCCGAGGCGATCACCGAGACTGCCGATCCGGA
ACAGGAGACCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGGCCTTTGTAC
ACGCCCCCCCGCCCACTCACAGCGATGCCGCCGCCCAGGTGTCCTTCGCC
CAGCTCACCAATGGCGACACCGAGCCGCTCATCTCGCCCCGATCCCACGA
GATTGCCGTCCAGACGAGCATCGAGAAGTACGAGCTGAGGGAGGTGGGAC
GAAGTGTGCGCAATGCGGCCACCGCCACCACCACAACGACAGCCACCGCC
TCCACGAGCACCAGTAGCAGGCGCAACTCCAGCCGCAACCAGAGACACGC
CCATGGCCAAAGACGCCGCTTGCCCGCCCTCTTCCGATTCGATGACGAGG
ATATAAAGACCTACTCCACGCTGGGTTCCAGCCGCGATGAC
BO09794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-PB | 1878 | CG7381-RB | 1..825 | 17..841 | 4100 | 99.8 | Plus |
CG7381-PA | 2139 | CG7381-RA | 262..1086 | 17..841 | 4100 | 99.8 | Plus |
CG7381-PC | 1653 | CG7381-RC | 1..600 | 242..841 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-RE | 2948 | CG7381-RE | 663..1487 | 17..841 | 4110 | 99.9 | Plus |
CG7381-RD | 3098 | CG7381-RD | 813..1637 | 17..841 | 4110 | 99.9 | Plus |
CG7381-RA | 2606 | CG7381-RA | 321..1145 | 17..841 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12969653..12970249 | 841..245 | 2985 | 100 | Minus |
3R | 32079331 | 3R | 12970323..12970441 | 245..127 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 12970510..12970621 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:11:48 has no hits.
BO09794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:22 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-PB | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:43 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-PA | 255..1086 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:46:48 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 314..1145 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:34 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 314..1145 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:34 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12970511..12970628 | 9..127 | 96 | | Minus |
3R | 12969653..12970248 | 246..841 | 100 | <- | Minus |
3R | 12970323..12970440 | 128..245 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:46:48 Download gff for
BO09794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8795375..8795970 | 246..841 | 100 | <- | Minus |
arm_3R | 8796045..8796162 | 128..245 | 99 | <- | Minus |
arm_3R | 8796233..8796350 | 9..127 | 96 | | Minus |
BO09794.complete Sequence
1909 bp assembled on 2008-08-14
GenBank Submission: FJ631576
> BO09794.complete
GAAGTTATCAGTCGACATGCCAACGGGGGCCAGTTGTAAAGCCGGGGTCT
GCGATTGCGCCGATGGCCAGAACTATCTGCGTGGCAAGTGTCGCCCACTG
AACGGACTCGGCGAGTCCTGCGAAACGGACTTGGACTGCTACTTTGGCTA
CGATCGTGCGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCTGTGCAAATG
GCTATTATAACAGATATGGAAACATCTGCCGTCGCAAATCAATGGAAGAA
AACGATGCCTGCGTCGTTAACGCGGACTGTGATGAACTGGGCGCCGGTGT
CGAGTGCGTTGGCCTAGTATGCACCTATGTGGACGAGATCACAACGACTC
CGGGTGGCGAGACCGAGGAAACGGAGACCACCAATCCGGGCTCGCCAGAG
GATGATGATTCAACCACAGCCGAGGCGATCACCGAGACTGCCGATCCGGA
ACAGGAGACCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGGCCTTTGTAC
ACGCCCCCCCGCCCACTCACAGCGATGCCGCCGCCCAGGTGTCCTTCGCC
CAGCTCACCAATGGCGACACCGAGCCGCTCATCTCGCCCCGATCCCACGA
GATTGCCGTCCAGACGAGCATCGAGAAGTACGAGCTGAGGGAGGTGGGAC
GAAGTGTGCGCAATGCGGCCACCGCCACCACCACAACGACAGCCACCGCC
TCCACGAGCACCAGTAGCAGGCGCAACTCCAGCCGCAACCAGAGACACGC
CCATGGCCAAAGACGCCGCTTGCCCGCCCTCTTCCGATTCGATGACGAGG
ATATAAAGACCTACTCCACGCTGGGTTCCAGCCGCGATGACGACGATGCC
GATGAGAAGAAGTATGGCAGCAGCTGCACGGATAATGGAAAGACATGCTC
GGGTCTGCCGCACTCGATTTGTTCCAAGAATATTTGCCTATGTCGCCAGG
GTTACTATGCCCGCAATGGAAAATGTTTTGCCGAACTGGGGGAAATTGCG
GAGAGCACGGATGAGTGCGAGTACGAGTTCGATCAGTTGACCAAAACTTG
CAATTGCCAAAAGAATTATTTCTACGAGCGGGATCTGCGCAATTGCAGAA
AACCCATTCAATACCACTTATCCTGCACCTCGAACAGCCAATGCAGTCCA
TTTGGCGCCTCCTATTGCCACCCGGAGATTCCGAGGAGGTGCACTTGCGA
GGAGTACGCCCTCTACGATGCCATCAAGCAGCTCTGCGAATACAAACGTG
GCCTGGGAGCCGAGTGTGAGTCCAACGATGGCTGTCCTGTGGATCACTCC
GTCTGCTCCAATCGCGTGTGCGTTTGTGCGGACAACTACTTTGAGAAGGA
CGATCAGTGTATGCGTGGCATCGGTGCCGACTGCTCGGTGGAGGATGACT
GCATACCTGAGAACACCGAATGCCAGGAGAAGGACGAGGAGGATCAGTCG
CGCACCTGCCAGTGCCGAAAGGGATACGTGCACTTTAAGGATGAGTGCCT
AAAAGAGGCCGAGGAGCTGGAGGACGAGTGCGTCGAGGATGAGCAGTGCA
AGCCGCTCCTGGCGAGCTGCAATTCGGAGGGCAAGTGTGGATGCAACGAT
GAGCAGCACGCTAAGAACGGAGTCTGTGAGACGAAGCGAGAGCTGGGAGA
GTCGTGCACCAAGGCCACCGAGTGCTATGTAGAAAAGGATCCCGAGAATG
TCGAGTGCCGCAACTCCGTGTGCCAGTGCAAGCTGGGCTACTCGGCGAAC
GCCAATCAGAATCAATGCATTCGCGTGATGCCCAATAAGAAAAATTCTTC
CGGTAGACCAAGTGCTCTCAAAATCATCACCTTCATGCTGATTGGCTCCG
CTTTCCTTATCACCAGTGCGGCCATAAAGCAGGCCTACTACGCAAGCTTT
CTAGACCAT
BO09794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-RE | 1878 | CG7381-PE | 1..1875 | 17..1891 | 9300 | 99.7 | Plus |
CG7381-RD | 1878 | CG7381-PD | 1..1875 | 17..1891 | 9300 | 99.7 | Plus |
CG7381-RA | 2139 | CG7381-PA | 262..2136 | 17..1891 | 9300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-RE | 2948 | CG7381-RE | 663..2537 | 17..1891 | 9300 | 99.7 | Plus |
CG7381-RD | 3098 | CG7381-RD | 813..2687 | 17..1891 | 9300 | 99.7 | Plus |
CG7381-RA | 2606 | CG7381-RA | 321..2195 | 17..1891 | 9300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12969631..12970249 | 863..245 | 3095 | 100 | Minus |
3R | 32079331 | 3R | 12968763..12969167 | 1508..1104 | 1980 | 99.3 | Minus |
3R | 32079331 | 3R | 12968345..12968499 | 1793..1639 | 775 | 100 | Minus |
3R | 32079331 | 3R | 12968562..12968694 | 1640..1508 | 650 | 99.2 | Minus |
3R | 32079331 | 3R | 12969231..12969351 | 1103..983 | 605 | 100 | Minus |
3R | 32079331 | 3R | 12969421..12969540 | 983..864 | 600 | 100 | Minus |
3R | 32079331 | 3R | 12970323..12970441 | 245..127 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 12970510..12970621 | 128..17 | 560 | 100 | Minus |
3R | 32079331 | 3R | 12968186..12968283 | 1891..1794 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:52 has no hits.
BO09794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:11 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 313..2194 | 9..1891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:41 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 321..2195 | 17..1893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:12 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 320..2194 | 17..1893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:24 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7381-RA | 321..2195 | 17..1893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:24 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12968184..12968283 | 1794..1893 | 98 | <- | Minus |
3R | 12968345..12968497 | 1641..1793 | 100 | <- | Minus |
3R | 12968562..12968693 | 1509..1640 | 99 | <- | Minus |
3R | 12968763..12969167 | 1104..1508 | 99 | <- | Minus |
3R | 12969231..12969350 | 984..1103 | 100 | <- | Minus |
3R | 12969421..12969540 | 864..983 | 100 | <- | Minus |
3R | 12969631..12970248 | 246..863 | 100 | <- | Minus |
3R | 12970323..12970440 | 128..245 | 99 | <- | Minus |
3R | 12970511..12970621 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:41 Download gff for
BO09794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8793906..8794005 | 1794..1893 | 98 | <- | Minus |
arm_3R | 8794067..8794219 | 1641..1793 | 100 | <- | Minus |
arm_3R | 8794284..8794415 | 1509..1640 | 99 | <- | Minus |
arm_3R | 8794485..8794889 | 1104..1508 | 99 | <- | Minus |
arm_3R | 8794953..8795072 | 984..1103 | 100 | <- | Minus |
arm_3R | 8795143..8795262 | 864..983 | 100 | <- | Minus |
arm_3R | 8795353..8795970 | 246..863 | 100 | <- | Minus |
arm_3R | 8796045..8796162 | 128..245 | 99 | <- | Minus |
arm_3R | 8796233..8796343 | 17..127 | 100 | | Minus |
BO09794.pep Sequence
Translation from 16 to 1909
> BO09794.pep
MPTGASCKAGVCDCADGQNYLRGKCRPLNGLGESCETDLDCYFGYDRASV
SCQQNVCGCANGYYNRYGNICRRKSMEENDACVVNADCDELGAGVECVGL
VCTYVDEITTTPGGETEETETTNPGSPEDDDSTTAEAITETADPEQETAF
SSRRQLTKAFVHAPPPTHSDAAAQVSFAQLTNGDTEPLISPRSHEIAVQT
SIEKYELREVGRSVRNAATATTTTTATASTSTSSRRNSSRNQRHAHGQRR
RLPALFRFDDEDIKTYSTLGSSRDDDDADEKKYGSSCTDNGKTCSGLPHS
ICSKNICLCRQGYYARNGKCFAELGEIAESTDECEYEFDQLTKTCNCQKN
YFYERDLRNCRKPIQYHLSCTSNSQCSPFGASYCHPEIPRRCTCEEYALY
DAIKQLCEYKRGLGAECESNDGCPVDHSVCSNRVCVCADNYFEKDDQCMR
GIGADCSVEDDCIPENTECQEKDEEDQSRTCQCRKGYVHFKDECLKEAEE
LEDECVEDEQCKPLLASCNSEGKCGCNDEQHAKNGVCETKRELGESCTKA
TECYVEKDPENVECRNSVCQCKLGYSANANQNQCIRVMPNKKNSSGRPSA
LKIITFMLIGSAFLITSAAIKQAYYASFLDH
BO09794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7381-PE | 625 | CG7381-PE | 1..625 | 1..625 | 3428 | 100 | Plus |
CG7381-PD | 625 | CG7381-PD | 1..625 | 1..625 | 3428 | 100 | Plus |
CG7381-PA | 712 | CG7381-PA | 88..712 | 1..625 | 3428 | 100 | Plus |
CG7381-PB | 625 | CG7381-PB | 1..625 | 1..625 | 3428 | 100 | Plus |
CG7381-PF | 711 | CG7381-PF | 88..711 | 1..625 | 3411 | 99.8 | Plus |