Clone BO09796 Report

Search the DGRC for BO09796

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:97
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG8008-RA
Protein status:BO09796.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO09796.3prime Sequence

875 bp (761 high quality bases) assembled on 2006-01-28

> BO09796.3prime
ATGGTCTAGAAAGCTTGCCTTCAGAACCTTGGCGTAGTGCTGCTTGTACC
TGTATTTGATCCGCAACACATATCCGATAAACACGAACGAAAGCAGGTAC
AGGAACGAGCTGACGAAGTTGAACAGACCGGGATAGGTGGTCAGGGATCG
CTTATAGATGAGGGTGTACAAGGGTGCAGCCACGAACGGTGCGAATGACT
GCAAAACATTCTTGATGGAGAAAATCTTGCCCAGATCCGAGGGAGGCACT
ATGTTCGATACTATTGTGCGGCACATGGGGCCTGAGATGGAGCGGAAGAC
GCCCAAGGTCACCGAAAGGTACATGTGCCAGGGCATCGTTGCAAAGCCCT
TGGCCAGATTATTCAGAATCTCCGAAAAGAACGCAAGCAGTGCCAGGGTC
ACCACCGACAGGCGAAAGACCTTCCGCAGAATAAGGAAACCAATGAGTGC
GCCAATCATGGGCACCAGGTGGCTGACCGTTTCAAAGAATGTGTAGTCCC
GCACAGTCCAGTGGAATTTCTCGCGCACGAATAGGTACATCACTGTCATC
ACTCCATCGAATACAAAGATGGACAGAAACATGGCCAGCGTAACCAGCCA
GATGATGGCGCGCGCGTGATGATCGCGACGCTTGAAGCAGGTGCTGATCA
TGTCCCTGATGTGTACCATACTGAACAGACCCGCCTTCTTGGCCTGCTCT
TCCGCCTCCTGGCGCTTGCGCTCCTCCGCCTTCTGTGGCAGCCGCTCCAC
GTACTTCGCCAACAGGTCGTCGTCGAAGCTCATCGCAGGCGTTGCCGGTG
TGGGCAGCTCCATCCTCTTATCCTTCCCTGGCTCCTCATCGTTCATGAAG
TTCGGCGGGCAGTCAATCGCAACGC

BO09796.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-PA 1320 CG8008-RA 461..1317 875..19 4235 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-RB 2680 CG8008-RB 1116..1972 875..19 4255 99.8 Minus
CG8008-RA 2748 CG8008-RA 1184..2040 875..19 4255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9159533..9159850 558..875 1590 100 Plus
2R 25286936 2R 9159077..9159269 230..422 935 99 Plus
2R 25286936 2R 9159334..9159473 419..558 700 100 Plus
2R 25286936 2R 9158774..9158883 74..183 550 100 Plus
2R 25286936 2R 9158615..9158670 19..74 280 100 Plus
2R 25286936 2R 9158947..9158995 183..231 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:05:44 has no hits.

BO09796.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:23 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-PA 461..1320 16..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:44 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-PA 461..1320 16..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:22 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 1184..2046 13..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:12 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 1184..2046 13..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:12 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9159533..9159850 558..875 100   Plus
2R 9158609..9158669 13..73 95 <- Plus
2R 9158774..9158882 74..182 100 <- Plus
2R 9158947..9158994 183..230 100 <- Plus
2R 9159078..9159267 231..420 98 <- Plus
2R 9159336..9159472 421..557 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:22 Download gff for BO09796.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5046114..5046174 13..73 95 <- Plus
arm_2R 5046279..5046387 74..182 100 <- Plus
arm_2R 5046452..5046499 183..230 100 <- Plus
arm_2R 5046583..5046772 231..420 98 <- Plus
arm_2R 5046841..5046977 421..557 100 <- Plus
arm_2R 5047038..5047355 558..875 100   Plus

BO09796.5prime Sequence

866 bp (829 high quality bases) assembled on 2006-01-28

> BO09796.5prime
GAAGTTATCAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCNACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCANGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATCCACTGGACTGTGC
GGGACTACACATTCTT

BO09796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-PA 1320 CG8008-RA 1..820 17..836 4012 99.5 Plus
CG8008-PA 1320 CG8008-RA 821..851 836..866 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-RB 2680 CG8008-RB 655..1506 16..866 4183 99.4 Plus
CG8008-RA 2748 CG8008-RA 723..1574 16..866 4183 99.4 Plus
CG15553-RC 1784 CG15553-RC 511..668 66..223 265 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9159533..9160305 794..22 3813 99.5 Minus
2R 25286936 2R 9159400..9159473 866..794 320 98.6 Minus
3R 32079331 3R 31100366..31100486 186..66 245 80.2 Minus
Blast to na_te.dros performed on 2015-02-13 09:03:28 has no hits.

BO09796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:24 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-PA 1..851 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:45 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-PA 1..851 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:49 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 721..1574 12..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:00:41 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 721..1574 12..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:00:41 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9159400..9159472 795..866 98 <- Minus
2R 9159533..9160305 22..794 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:49 Download gff for BO09796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5046905..5046977 795..866 98 <- Minus
arm_2R 5047038..5047810 22..794 99   Minus

BO09796.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ631577

> BO09796.complete
GAAGTTATCAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCAACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTG
CGGGACTACACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGG
CGCACTCATTGGTTTCCTTATTCTGCGGAAGGTCTTTCGCCTGTCGGTGG
TGACCCTGGCACTGCTTGCGTTCTTTTCGGAGATTCTGAATAATCTGGCC
AAGGGCTTTGCAACGATGCCCTGGCACATGTACCTTTCGGTGACCTTGGG
CGTCTTCCGCTCCATCTCAGGCCCCATGTGCCGCACAATAGTATCGAACA
TAGTGCCTCCCTCGGATCTGGGCAAGATTTTCTCCATCAAGAATGTTTTG
CAGTCATTCGCACCGTTCGTGGCTGCACCCTTGTACACCCTCATCTATAA
GCGATCCCTGACCACCTATCCCGGTCTGTTCAACTTCGTCAGCTCGTTCC
TGTACCTGCTTTCGTTCGTGTTTATCGGATATGTGTTGCGGATCAAATAC
AGGTACAAGCAGCACTACGCCAAGGTTCTGAAGGCAAGCTTTCTAGACCA
T

BO09796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-RB 1701 CG8008-PB 381..1698 16..1333 6530 99.7 Plus
CG8008-RA 1320 CG8008-PA 1..1317 17..1333 6525 99.7 Plus
CG15553-RC 1566 CG15553-PC 416..573 66..223 265 77.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-RB 2680 CG8008-RB 655..1972 16..1333 6530 99.7 Plus
CG8008-RA 2748 CG8008-RA 723..2040 16..1333 6530 99.7 Plus
CG15553-RC 1784 CG15553-RC 511..668 66..223 265 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9159533..9160305 794..22 3835 99.7 Minus
2R 25286936 2R 9159077..9159269 1122..930 935 99 Minus
2R 25286936 2R 9159334..9159473 933..794 700 100 Minus
2R 25286936 2R 9158774..9158883 1278..1169 550 100 Minus
2R 25286936 2R 9158615..9158670 1333..1278 280 100 Minus
2R 25286936 2R 9158947..9158995 1169..1121 245 100 Minus
3R 32079331 3R 31100366..31100486 186..66 245 80.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:45 has no hits.

BO09796.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:27 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
CG8008-RB 379..1701 12..1336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:28 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
CG8008-RB 652..1977 12..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:38 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 724..2040 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:28 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
CG8008-RB 652..1977 12..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:35 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
CG8008-RA 724..2040 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:35 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9158612..9158669 1279..1335 96 <- Minus
2R 9158774..9158882 1170..1278 100 <- Minus
2R 9158947..9158994 1122..1169 100 <- Minus
2R 9159078..9159267 932..1121 98 <- Minus
2R 9159336..9159472 795..931 100 <- Minus
2R 9159533..9160307 17..794 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:38 Download gff for BO09796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5046117..5046174 1279..1335 96 <- Minus
arm_2R 5046279..5046387 1170..1278 100 <- Minus
arm_2R 5046452..5046499 1122..1169 100 <- Minus
arm_2R 5046583..5046772 932..1121 98 <- Minus
arm_2R 5046841..5046977 795..931 100 <- Minus
arm_2R 5047038..5047812 17..794 99   Minus

BO09796.pep Sequence

Translation from 16 to 1351

> BO09796.pep
MIGFSASFLMMAAICELSSYYVVNPWWYIMAAVPHSLLGGNCVFSVAAFC
FISDITDCKSRPYRMIFMESLFFIGLTSGSLLSSFVYAAVGSAATIGISG
CIVTFATLFIIFFVPESLHFHKEQETKNAITANVEKECIDSKVPITACDL
QLDRVAIDCPPNFMNDEEPGKDKRMELPTPATPAMSFDDDLLAKYVERLP
QKAEERKRQEAEEQAKKAGLFSMVHIRDMISTCFKRRDHHARAIIWLVTL
AMFLSIFVFDGVMTVMYLFVREKFHWTVRDYTFFETVSHLVPMIGALIGF
LILRKVFRLSVVTLALLAFFSEILNNLAKGFATMPWHMYLSVTLGVFRSI
SGPMCRTIVSNIVPPSDLGKIFSIKNVLQSFAPFVAAPLYTLIYKRSLTT
YPGLFNFVSSFLYLLSFVFIGYVLRIKYRYKQHYAKVLKASFLDH

BO09796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8008-PB 566 CG8008-PB 128..566 1..439 2272 100 Plus
CG8008-PA 439 CG8008-PA 1..439 1..439 2272 100 Plus
CG15553-PC 521 CG15553-PC 123..521 1..439 1202 55.5 Plus
CG30344-PA 507 CG30344-PA 292..493 226..427 484 40.1 Plus
CG8046-PB 388 CG8046-PB 172..388 226..439 444 39.6 Plus
CG30344-PA 507 CG30344-PA 157..273 3..119 213 29.1 Plus