Clone Sequence Records
BO09796.3prime Sequence
875 bp (761 high quality bases) assembled on 2006-01-28
> BO09796.3prime
ATGGTCTAGAAAGCTTGCCTTCAGAACCTTGGCGTAGTGCTGCTTGTACC
TGTATTTGATCCGCAACACATATCCGATAAACACGAACGAAAGCAGGTAC
AGGAACGAGCTGACGAAGTTGAACAGACCGGGATAGGTGGTCAGGGATCG
CTTATAGATGAGGGTGTACAAGGGTGCAGCCACGAACGGTGCGAATGACT
GCAAAACATTCTTGATGGAGAAAATCTTGCCCAGATCCGAGGGAGGCACT
ATGTTCGATACTATTGTGCGGCACATGGGGCCTGAGATGGAGCGGAAGAC
GCCCAAGGTCACCGAAAGGTACATGTGCCAGGGCATCGTTGCAAAGCCCT
TGGCCAGATTATTCAGAATCTCCGAAAAGAACGCAAGCAGTGCCAGGGTC
ACCACCGACAGGCGAAAGACCTTCCGCAGAATAAGGAAACCAATGAGTGC
GCCAATCATGGGCACCAGGTGGCTGACCGTTTCAAAGAATGTGTAGTCCC
GCACAGTCCAGTGGAATTTCTCGCGCACGAATAGGTACATCACTGTCATC
ACTCCATCGAATACAAAGATGGACAGAAACATGGCCAGCGTAACCAGCCA
GATGATGGCGCGCGCGTGATGATCGCGACGCTTGAAGCAGGTGCTGATCA
TGTCCCTGATGTGTACCATACTGAACAGACCCGCCTTCTTGGCCTGCTCT
TCCGCCTCCTGGCGCTTGCGCTCCTCCGCCTTCTGTGGCAGCCGCTCCAC
GTACTTCGCCAACAGGTCGTCGTCGAAGCTCATCGCAGGCGTTGCCGGTG
TGGGCAGCTCCATCCTCTTATCCTTCCCTGGCTCCTCATCGTTCATGAAG
TTCGGCGGGCAGTCAATCGCAACGC
BO09796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-PA | 1320 | CG8008-RA | 461..1317 | 875..19 | 4235 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-RB | 2680 | CG8008-RB | 1116..1972 | 875..19 | 4255 | 99.8 | Minus |
CG8008-RA | 2748 | CG8008-RA | 1184..2040 | 875..19 | 4255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9159533..9159850 | 558..875 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 9159077..9159269 | 230..422 | 935 | 99 | Plus |
2R | 25286936 | 2R | 9159334..9159473 | 419..558 | 700 | 100 | Plus |
2R | 25286936 | 2R | 9158774..9158883 | 74..183 | 550 | 100 | Plus |
2R | 25286936 | 2R | 9158615..9158670 | 19..74 | 280 | 100 | Plus |
2R | 25286936 | 2R | 9158947..9158995 | 183..231 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:05:44 has no hits.
BO09796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:23 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-PA | 461..1320 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:44 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-PA | 461..1320 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:46:22 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 1184..2046 | 13..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:12 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 1184..2046 | 13..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:12 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9159533..9159850 | 558..875 | 100 | | Plus |
2R | 9158609..9158669 | 13..73 | 95 | <- | Plus |
2R | 9158774..9158882 | 74..182 | 100 | <- | Plus |
2R | 9158947..9158994 | 183..230 | 100 | <- | Plus |
2R | 9159078..9159267 | 231..420 | 98 | <- | Plus |
2R | 9159336..9159472 | 421..557 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:46:22 Download gff for
BO09796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5046114..5046174 | 13..73 | 95 | <- | Plus |
arm_2R | 5046279..5046387 | 74..182 | 100 | <- | Plus |
arm_2R | 5046452..5046499 | 183..230 | 100 | <- | Plus |
arm_2R | 5046583..5046772 | 231..420 | 98 | <- | Plus |
arm_2R | 5046841..5046977 | 421..557 | 100 | <- | Plus |
arm_2R | 5047038..5047355 | 558..875 | 100 | | Plus |
BO09796.5prime Sequence
866 bp (829 high quality bases) assembled on 2006-01-28
> BO09796.5prime
GAAGTTATCAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCNACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCANGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATCCACTGGACTGTGC
GGGACTACACATTCTT
BO09796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-PA | 1320 | CG8008-RA | 1..820 | 17..836 | 4012 | 99.5 | Plus |
CG8008-PA | 1320 | CG8008-RA | 821..851 | 836..866 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-RB | 2680 | CG8008-RB | 655..1506 | 16..866 | 4183 | 99.4 | Plus |
CG8008-RA | 2748 | CG8008-RA | 723..1574 | 16..866 | 4183 | 99.4 | Plus |
CG15553-RC | 1784 | CG15553-RC | 511..668 | 66..223 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9159533..9160305 | 794..22 | 3813 | 99.5 | Minus |
2R | 25286936 | 2R | 9159400..9159473 | 866..794 | 320 | 98.6 | Minus |
3R | 32079331 | 3R | 31100366..31100486 | 186..66 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:03:28 has no hits.
BO09796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:24 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-PA | 1..851 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:45 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-PA | 1..851 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:49 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 721..1574 | 12..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:00:41 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 721..1574 | 12..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 11:00:41 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9159400..9159472 | 795..866 | 98 | <- | Minus |
2R | 9159533..9160305 | 22..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:49 Download gff for
BO09796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5046905..5046977 | 795..866 | 98 | <- | Minus |
arm_2R | 5047038..5047810 | 22..794 | 99 | | Minus |
BO09796.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ631577
> BO09796.complete
GAAGTTATCAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCAACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTG
CGGGACTACACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGG
CGCACTCATTGGTTTCCTTATTCTGCGGAAGGTCTTTCGCCTGTCGGTGG
TGACCCTGGCACTGCTTGCGTTCTTTTCGGAGATTCTGAATAATCTGGCC
AAGGGCTTTGCAACGATGCCCTGGCACATGTACCTTTCGGTGACCTTGGG
CGTCTTCCGCTCCATCTCAGGCCCCATGTGCCGCACAATAGTATCGAACA
TAGTGCCTCCCTCGGATCTGGGCAAGATTTTCTCCATCAAGAATGTTTTG
CAGTCATTCGCACCGTTCGTGGCTGCACCCTTGTACACCCTCATCTATAA
GCGATCCCTGACCACCTATCCCGGTCTGTTCAACTTCGTCAGCTCGTTCC
TGTACCTGCTTTCGTTCGTGTTTATCGGATATGTGTTGCGGATCAAATAC
AGGTACAAGCAGCACTACGCCAAGGTTCTGAAGGCAAGCTTTCTAGACCA
T
BO09796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-RB | 1701 | CG8008-PB | 381..1698 | 16..1333 | 6530 | 99.7 | Plus |
CG8008-RA | 1320 | CG8008-PA | 1..1317 | 17..1333 | 6525 | 99.7 | Plus |
CG15553-RC | 1566 | CG15553-PC | 416..573 | 66..223 | 265 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-RB | 2680 | CG8008-RB | 655..1972 | 16..1333 | 6530 | 99.7 | Plus |
CG8008-RA | 2748 | CG8008-RA | 723..2040 | 16..1333 | 6530 | 99.7 | Plus |
CG15553-RC | 1784 | CG15553-RC | 511..668 | 66..223 | 265 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9159533..9160305 | 794..22 | 3835 | 99.7 | Minus |
2R | 25286936 | 2R | 9159077..9159269 | 1122..930 | 935 | 99 | Minus |
2R | 25286936 | 2R | 9159334..9159473 | 933..794 | 700 | 100 | Minus |
2R | 25286936 | 2R | 9158774..9158883 | 1278..1169 | 550 | 100 | Minus |
2R | 25286936 | 2R | 9158615..9158670 | 1333..1278 | 280 | 100 | Minus |
2R | 25286936 | 2R | 9158947..9158995 | 1169..1121 | 245 | 100 | Minus |
3R | 32079331 | 3R | 31100366..31100486 | 186..66 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:45 has no hits.
BO09796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:27 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RB | 379..1701 | 12..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:28 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RB | 652..1977 | 12..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:38 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 724..2040 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:28 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RB | 652..1977 | 12..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:35 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8008-RA | 724..2040 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:35 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9158612..9158669 | 1279..1335 | 96 | <- | Minus |
2R | 9158774..9158882 | 1170..1278 | 100 | <- | Minus |
2R | 9158947..9158994 | 1122..1169 | 100 | <- | Minus |
2R | 9159078..9159267 | 932..1121 | 98 | <- | Minus |
2R | 9159336..9159472 | 795..931 | 100 | <- | Minus |
2R | 9159533..9160307 | 17..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:38 Download gff for
BO09796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5046117..5046174 | 1279..1335 | 96 | <- | Minus |
arm_2R | 5046279..5046387 | 1170..1278 | 100 | <- | Minus |
arm_2R | 5046452..5046499 | 1122..1169 | 100 | <- | Minus |
arm_2R | 5046583..5046772 | 932..1121 | 98 | <- | Minus |
arm_2R | 5046841..5046977 | 795..931 | 100 | <- | Minus |
arm_2R | 5047038..5047812 | 17..794 | 99 | | Minus |
BO09796.pep Sequence
Translation from 16 to 1351
> BO09796.pep
MIGFSASFLMMAAICELSSYYVVNPWWYIMAAVPHSLLGGNCVFSVAAFC
FISDITDCKSRPYRMIFMESLFFIGLTSGSLLSSFVYAAVGSAATIGISG
CIVTFATLFIIFFVPESLHFHKEQETKNAITANVEKECIDSKVPITACDL
QLDRVAIDCPPNFMNDEEPGKDKRMELPTPATPAMSFDDDLLAKYVERLP
QKAEERKRQEAEEQAKKAGLFSMVHIRDMISTCFKRRDHHARAIIWLVTL
AMFLSIFVFDGVMTVMYLFVREKFHWTVRDYTFFETVSHLVPMIGALIGF
LILRKVFRLSVVTLALLAFFSEILNNLAKGFATMPWHMYLSVTLGVFRSI
SGPMCRTIVSNIVPPSDLGKIFSIKNVLQSFAPFVAAPLYTLIYKRSLTT
YPGLFNFVSSFLYLLSFVFIGYVLRIKYRYKQHYAKVLKASFLDH
BO09796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8008-PB | 566 | CG8008-PB | 128..566 | 1..439 | 2272 | 100 | Plus |
CG8008-PA | 439 | CG8008-PA | 1..439 | 1..439 | 2272 | 100 | Plus |
CG15553-PC | 521 | CG15553-PC | 123..521 | 1..439 | 1202 | 55.5 | Plus |
CG30344-PA | 507 | CG30344-PA | 292..493 | 226..427 | 484 | 40.1 | Plus |
CG8046-PB | 388 | CG8046-PB | 172..388 | 226..439 | 444 | 39.6 | Plus |
CG30344-PA | 507 | CG30344-PA | 157..273 | 3..119 | 213 | 29.1 | Plus |