Clone Sequence Records
BO09801.3prime Sequence
959 bp (865 high quality bases) assembled on 2006-04-19
> BO09801.3prime
ATGGTCTAGAAAGCTTGCGACATGCGGCTTGTGCTGCCCGCCGCAGAGGC
CGCAGTGGATGCCGGCCAAGTGGCAGGCGCGGAGCGGCGGATAGCACCAC
AGGCAGGGCACGAACAACGAGAGGATCGCCAGGCCCAGCCAGCGCTTGCT
GCAGCCGGCCTCGCTGGCGCTGCAGTCGCACGGATGCTGGGCCGTCTCGC
CCTCGGCGTCGCTCATGCAGTGGTAGATCATGCAACGGGCACAGCCCATC
CCAGAGATGCACTCGTAGCCGCTGCGAAACGCATCCGGGGCATATTCGCA
GGCGCCCCGCCGATTGAAGTCCTCGCTGTACAGCTCGTGGCAGTAGCGGC
ATCGCAGGCGCGTCTCCTTCTTCAGTATGTCGGATACGTTCGGCTTGTGC
AGTGGCTTTCCCGATCCGCCGTCGCGACAGGCCAGTCCACCACCCGCCGC
CGTCTGAGCCGCCGCCATCGCCTGCGCCGCCTCCAGAGCGTTGCGCTTCT
TTAGTGCACTGATCGACTCCCTGCGAGCATTGAGCACCTGCGCCCCCACC
GGCTGGTCCACCACCGGATAGTTGTAGTCGTGGTGCACCGCCGTCAGCGT
CACGTACGAGTAGTTCTCACTGGCCGCTATCTGGCCGGCCGTCGCCGGCG
ATGGAGCAGCAGAAGCGGGCGGTGCGTCTGGCGGCGACGTGGTGGCCGAT
GTTTTGTCCGTGGATATGTAGTGAATGGGCGGCGGAGGCAGCTTCTCCGA
GTCGGAGTTGTTGCTGACGCTCTTGTGACTTTTCTCGCTGCCCTCGGGGC
TTGAATGGATCTTTTGTAAACTCTCGCTCTCCACAGGTAAGTCCAGGGTC
ATGAATACATCATCTTCGCCNACCGAATCATATTTGGTTAGCGGTGGGCA
TATTATCGTTGGATTCGATTTGGCCAGTCCATCGATCAGCTCGTTGTAGG
CGCGCAGGA
BO09801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10155-PA | 1281 | Spred-RA | 338..1278 | 959..19 | 4636 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spred-RC | 4167 | CG10155-RC | 831..1771 | 959..19 | 4664 | 99.7 | Minus |
Spred-RA | 2657 | CG10155-RA | 831..1771 | 959..19 | 4664 | 99.7 | Minus |
Spred-RB | 2525 | CG10155-RB | 790..1639 | 868..19 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14762042..14762796 | 19..773 | 3745 | 99.7 | Plus |
2R | 25286936 | 2R | 14762919..14763075 | 774..930 | 774 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:47:27 has no hits.
BO09801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:25 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-PA | 339..1281 | 16..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:47 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10155-PA | 339..1281 | 16..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:36:07 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 832..1771 | 19..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:53 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 832..1771 | 19..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:53 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14763831..14763859 | 930..958 | 100 | | Plus |
2R | 14762042..14762796 | 19..773 | 99 | <- | Plus |
2R | 14762919..14763074 | 774..929 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:36:07 Download gff for
BO09801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10649547..10650301 | 19..773 | 99 | <- | Plus |
arm_2R | 10650424..10650579 | 774..929 | 99 | <- | Plus |
arm_2R | 10651336..10651364 | 930..958 | 100 | | Plus |
BO09801.5prime Sequence
939 bp (898 high quality bases) assembled on 2006-04-19
> BO09801.5prime
GAAGTTATCAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAA
CAGTACGCGCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTT
CCGCTGGCCGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAG
GCTATCCCCATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGA
TATCCGATCAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAG
TATTACAAAGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCG
GAATGGACTCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGG
GCGTCCTGCGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAAT
CCAACGATAATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGA
TGATGTATTCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAA
AGATCCATTCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGC
AACAACTCCGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATC
CACGGACAAAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTT
CTGCTGCTCCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAAC
TACTCGTACGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGT
GGTGGACCAGCCGGTGGGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGA
TCAGTGCACTAAAGAAGCGCAACGCTCTGGAGGCGGCGCANGCGATGGCG
GCGGCTCAGACGGCGGCGGGTGGTGGACTGGCCTGTCGCGACGGCGGATC
GGGGAAGCACTGCACAAGCCGAACGTATCCGACATACTG
BO09801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10155-PA | 1281 | Spred-RA | 1..887 | 17..903 | 4341 | 99.5 | Plus |
CG10155-PA | 1281 | Spred-RA | 893..924 | 908..939 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spred-RC | 4167 | CG10155-RC | 493..1417 | 16..939 | 4514 | 99.2 | Plus |
Spred-RA | 2657 | CG10155-RA | 493..1417 | 16..939 | 4514 | 99.2 | Plus |
Spred-RB | 2525 | CG10155-RB | 790..1285 | 445..939 | 2384 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14762396..14762796 | 939..540 | 1899 | 98.8 | Minus |
2R | 25286936 | 2R | 14764058..14764239 | 216..35 | 895 | 99.5 | Minus |
2R | 25286936 | 2R | 14763830..14763999 | 384..215 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 14762919..14763075 | 539..383 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:39 has no hits.
BO09801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:26 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:48 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10155-PA | 1..924 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:44 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 493..1417 | 16..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:47:43 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 493..1417 | 16..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:47:43 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14763831..14763999 | 215..383 | 99 | <- | Minus |
2R | 14764060..14764237 | 37..214 | 99 | <- | Minus |
2R | 14768004..14768024 | 16..36 | 100 | | Minus |
2R | 14762396..14762796 | 540..939 | 98 | <- | Minus |
2R | 14762919..14763074 | 384..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:44 Download gff for
BO09801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10649901..10650301 | 540..939 | 98 | <- | Minus |
arm_2R | 10650424..10650579 | 384..539 | 100 | <- | Minus |
arm_2R | 10651336..10651504 | 215..383 | 99 | <- | Minus |
arm_2R | 10651565..10651742 | 37..214 | 99 | <- | Minus |
arm_2R | 10655509..10655529 | 16..36 | 100 | | Minus |
BO09801.complete Sequence
1312 bp (1312 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631578
> BO09801.complete
GAAGTTATCAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAA
CAGTACGCGCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTT
CCGCTGGCCGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAG
GCTATCCCCATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGA
TATCCGATCAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAG
TATTACAAAGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCG
GAATGGACTCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGG
GCGTCCTGCGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAAT
CCAACGATAATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGA
TGATGTATTCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAA
AGATCCATTCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGC
AACAACTCCGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATC
CACGGACAAAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTT
CTGCTGCTCCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAAC
TACTCGTACGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGT
GGTGGACCAGCCGGTGGGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGA
TCAGTGCACTAAAGAAGCGCAACGCTCTGGAGGCGGCGCAGGCGATGGCG
GCGGCTCAGACGGCGGCGGGTGGTGGACTGGCCTGTCGCGACGGCGGATC
GGGAAAGCCACTGCACAAGCCGAACGTATCCGACATACTGAAGAAGGAGA
CGCGCCTGCGATGCCGCTACTGCCACGAGCTGTACAGCGAGGACTTCAAT
CGGCGGGGCGCCTGCGAATATGCCCCGGATGCGTTTCGCAGCGGCTACGA
GTGCATCTCTGGGATGGGCTGTGCCCGTTGCATGATCTACCACTGCATGA
GCGACGCCGAGGGCGAGACGGCCCAGCATCCGTGCGACTGCAGCGCCAGC
GAGGCCGGCTGCAGCAAGCGCTGGCTGGGCCTGGCGATCCTCTCGTTGTT
CGTGCCCTGCCTGTGGTGCTATCCGCCGCTCCGCGCCTGCCACTTGGCCG
GCATCCACTGCGGCCTCTGCGGCGGGCAGCACAAGCCGCATGTCGCAAGC
TTTCTAGACCAT
BO09801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spred-RC | 1560 | CG10155-PC | 1..1278 | 17..1294 | 6330 | 99.7 | Plus |
Spred-RA | 1281 | CG10155-PA | 1..1278 | 17..1294 | 6330 | 99.7 | Plus |
Spred-RB | 1215 | CG10155-PB | 363..1212 | 445..1294 | 4205 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spred-RC | 4167 | CG10155-RC | 493..1771 | 16..1294 | 6335 | 99.7 | Plus |
Spred-RA | 2657 | CG10155-RA | 493..1771 | 16..1294 | 6335 | 99.7 | Plus |
Spred-RB | 2525 | CG10155-RB | 790..1639 | 445..1294 | 4205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14762042..14762796 | 1294..540 | 3745 | 99.7 | Minus |
2R | 25286936 | 2R | 14764058..14764239 | 216..35 | 895 | 99.5 | Minus |
2R | 25286936 | 2R | 14763830..14763999 | 384..215 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 14762919..14763075 | 539..383 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:08:46 has no hits.
BO09801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:26 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 1..1281 | 17..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:19 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 492..1770 | 16..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:54 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 494..1771 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:26 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 492..1770 | 16..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:53 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spred-RA | 494..1771 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:53 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14764060..14764237 | 37..214 | 99 | <- | Minus |
2R | 14768004..14768023 | 17..36 | 100 | | Minus |
2R | 14763831..14763999 | 215..383 | 99 | <- | Minus |
2R | 14762038..14762796 | 540..1296 | 99 | <- | Minus |
2R | 14762919..14763074 | 384..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:54 Download gff for
BO09801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10649543..10650301 | 540..1296 | 99 | <- | Minus |
arm_2R | 10650424..10650579 | 384..539 | 100 | <- | Minus |
arm_2R | 10651336..10651504 | 215..383 | 99 | <- | Minus |
arm_2R | 10651565..10651742 | 37..214 | 99 | <- | Minus |
arm_2R | 10655509..10655528 | 17..36 | 100 | | Minus |
BO09801.pep Sequence
Translation from 16 to 1312
> BO09801.pep
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSVGEDDVFMT
LDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTS
ATTSPPDAPPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPV
GAQVLNARRESISALKKRNALEAAQAMAAAQTAAGGGLACRDGGSGKPLH
KPNVSDILKKETRLRCRYCHELYSEDFNRRGACEYAPDAFRSGYECISGM
GCARCMIYHCMSDAEGETAQHPCDCSASEAGCSKRWLGLAILSLFVPCLW
CYPPLRACHLAGIHCGLCGGQHKPHVASFLDH
BO09801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spred-PC | 519 | CG10155-PC | 1..426 | 1..426 | 2284 | 100 | Plus |
Spred-PA | 426 | CG10155-PA | 1..426 | 1..426 | 2284 | 100 | Plus |
Spred-PB | 404 | CG10155-PB | 1..404 | 1..426 | 2133 | 94.8 | Plus |
ena-PG | 664 | CG15112-PG | 6..198 | 10..209 | 182 | 26.3 | Plus |
ena-PD | 687 | CG15112-PD | 6..198 | 10..209 | 182 | 26.3 | Plus |