Clone BO09801 Report

Search the DGRC for BO09801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptSpred-RA
Protein status:BO09801.pep: validated full length
Sequenced Size:1312

Clone Sequence Records

BO09801.3prime Sequence

959 bp (865 high quality bases) assembled on 2006-04-19

> BO09801.3prime
ATGGTCTAGAAAGCTTGCGACATGCGGCTTGTGCTGCCCGCCGCAGAGGC
CGCAGTGGATGCCGGCCAAGTGGCAGGCGCGGAGCGGCGGATAGCACCAC
AGGCAGGGCACGAACAACGAGAGGATCGCCAGGCCCAGCCAGCGCTTGCT
GCAGCCGGCCTCGCTGGCGCTGCAGTCGCACGGATGCTGGGCCGTCTCGC
CCTCGGCGTCGCTCATGCAGTGGTAGATCATGCAACGGGCACAGCCCATC
CCAGAGATGCACTCGTAGCCGCTGCGAAACGCATCCGGGGCATATTCGCA
GGCGCCCCGCCGATTGAAGTCCTCGCTGTACAGCTCGTGGCAGTAGCGGC
ATCGCAGGCGCGTCTCCTTCTTCAGTATGTCGGATACGTTCGGCTTGTGC
AGTGGCTTTCCCGATCCGCCGTCGCGACAGGCCAGTCCACCACCCGCCGC
CGTCTGAGCCGCCGCCATCGCCTGCGCCGCCTCCAGAGCGTTGCGCTTCT
TTAGTGCACTGATCGACTCCCTGCGAGCATTGAGCACCTGCGCCCCCACC
GGCTGGTCCACCACCGGATAGTTGTAGTCGTGGTGCACCGCCGTCAGCGT
CACGTACGAGTAGTTCTCACTGGCCGCTATCTGGCCGGCCGTCGCCGGCG
ATGGAGCAGCAGAAGCGGGCGGTGCGTCTGGCGGCGACGTGGTGGCCGAT
GTTTTGTCCGTGGATATGTAGTGAATGGGCGGCGGAGGCAGCTTCTCCGA
GTCGGAGTTGTTGCTGACGCTCTTGTGACTTTTCTCGCTGCCCTCGGGGC
TTGAATGGATCTTTTGTAAACTCTCGCTCTCCACAGGTAAGTCCAGGGTC
ATGAATACATCATCTTCGCCNACCGAATCATATTTGGTTAGCGGTGGGCA
TATTATCGTTGGATTCGATTTGGCCAGTCCATCGATCAGCTCGTTGTAGG
CGCGCAGGA

BO09801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10155-PA 1281 Spred-RA 338..1278 959..19 4636 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-RC 4167 CG10155-RC 831..1771 959..19 4664 99.7 Minus
Spred-RA 2657 CG10155-RA 831..1771 959..19 4664 99.7 Minus
Spred-RB 2525 CG10155-RB 790..1639 868..19 4205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14762042..14762796 19..773 3745 99.7 Plus
2R 25286936 2R 14762919..14763075 774..930 774 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 20:47:27 has no hits.

BO09801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:25 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
Spred-PA 339..1281 16..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:47 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10155-PA 339..1281 16..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:36:07 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 832..1771 19..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:53 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 832..1771 19..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:53 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14763831..14763859 930..958 100   Plus
2R 14762042..14762796 19..773 99 <- Plus
2R 14762919..14763074 774..929 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:36:07 Download gff for BO09801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10649547..10650301 19..773 99 <- Plus
arm_2R 10650424..10650579 774..929 99 <- Plus
arm_2R 10651336..10651364 930..958 100   Plus

BO09801.5prime Sequence

939 bp (898 high quality bases) assembled on 2006-04-19

> BO09801.5prime
GAAGTTATCAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAA
CAGTACGCGCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTT
CCGCTGGCCGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAG
GCTATCCCCATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGA
TATCCGATCAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAG
TATTACAAAGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCG
GAATGGACTCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGG
GCGTCCTGCGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAAT
CCAACGATAATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGA
TGATGTATTCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAA
AGATCCATTCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGC
AACAACTCCGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATC
CACGGACAAAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTT
CTGCTGCTCCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAAC
TACTCGTACGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGT
GGTGGACCAGCCGGTGGGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGA
TCAGTGCACTAAAGAAGCGCAACGCTCTGGAGGCGGCGCANGCGATGGCG
GCGGCTCAGACGGCGGCGGGTGGTGGACTGGCCTGTCGCGACGGCGGATC
GGGGAAGCACTGCACAAGCCGAACGTATCCGACATACTG

BO09801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10155-PA 1281 Spred-RA 1..887 17..903 4341 99.5 Plus
CG10155-PA 1281 Spred-RA 893..924 908..939 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-RC 4167 CG10155-RC 493..1417 16..939 4514 99.2 Plus
Spred-RA 2657 CG10155-RA 493..1417 16..939 4514 99.2 Plus
Spred-RB 2525 CG10155-RB 790..1285 445..939 2384 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14762396..14762796 939..540 1899 98.8 Minus
2R 25286936 2R 14764058..14764239 216..35 895 99.5 Minus
2R 25286936 2R 14763830..14763999 384..215 835 99.4 Minus
2R 25286936 2R 14762919..14763075 539..383 785 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:17:39 has no hits.

BO09801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:26 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
Spred-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:48 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10155-PA 1..924 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:44 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 493..1417 16..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:47:43 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 493..1417 16..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:47:43 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14763831..14763999 215..383 99 <- Minus
2R 14764060..14764237 37..214 99 <- Minus
2R 14768004..14768024 16..36 100   Minus
2R 14762396..14762796 540..939 98 <- Minus
2R 14762919..14763074 384..539 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:44 Download gff for BO09801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10649901..10650301 540..939 98 <- Minus
arm_2R 10650424..10650579 384..539 100 <- Minus
arm_2R 10651336..10651504 215..383 99 <- Minus
arm_2R 10651565..10651742 37..214 99 <- Minus
arm_2R 10655509..10655529 16..36 100   Minus

BO09801.complete Sequence

1312 bp (1312 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631578

> BO09801.complete
GAAGTTATCAGTCGACATGACAGAAGGACATGAAAGCGACTTCTTAGTAA
CAGTACGCGCACAGGTAATGACCAGAGACGAGAGCACCGAGGGCTGGCTT
CCGCTGGCCGGGGGTGGCCTGGCCAATGTTTCGATCCGGAAGCGGGCTAG
GCTATCCCCATTGGCATCGGGTCATGACTACATCATCTACGGGCAGAGGA
TATCCGATCAGAGCGTCATCTTGAGCTGTGTGATCAATCGTGATCTGAAG
TATTACAAAGTAATGCCCACATTTCATCATTGGCGCGCAGGGAAGCAGCG
GAATGGACTCACATTTCAAACGGCCGCCGATGCGCGAGCCTTTGACAAGG
GCGTCCTGCGCGCCTACAACGAGCTGATCGATGGACTGGCCAAATCGAAT
CCAACGATAATATGCCCACCGCTAACCAAATATGATTCGGTTGGCGAAGA
TGATGTATTCATGACCCTGGACTTACCTGTGGAGAGCGAGAGTTTACAAA
AGATCCATTCAAGCCCCGAGGGCAGCGAGAAAAGTCACAAGAGCGTCAGC
AACAACTCCGACTCGGAGAAGCTGCCTCCGCCGCCCATTCACTACATATC
CACGGACAAAACATCGGCCACCACGTCGCCGCCAGACGCACCGCCCGCTT
CTGCTGCTCCATCGCCGGCGACGGCCGGCCAGATAGCGGCCAGTGAGAAC
TACTCGTACGTGACGCTGACGGCGGTGCACCACGACTACAACTATCCGGT
GGTGGACCAGCCGGTGGGGGCGCAGGTGCTCAATGCTCGCAGGGAGTCGA
TCAGTGCACTAAAGAAGCGCAACGCTCTGGAGGCGGCGCAGGCGATGGCG
GCGGCTCAGACGGCGGCGGGTGGTGGACTGGCCTGTCGCGACGGCGGATC
GGGAAAGCCACTGCACAAGCCGAACGTATCCGACATACTGAAGAAGGAGA
CGCGCCTGCGATGCCGCTACTGCCACGAGCTGTACAGCGAGGACTTCAAT
CGGCGGGGCGCCTGCGAATATGCCCCGGATGCGTTTCGCAGCGGCTACGA
GTGCATCTCTGGGATGGGCTGTGCCCGTTGCATGATCTACCACTGCATGA
GCGACGCCGAGGGCGAGACGGCCCAGCATCCGTGCGACTGCAGCGCCAGC
GAGGCCGGCTGCAGCAAGCGCTGGCTGGGCCTGGCGATCCTCTCGTTGTT
CGTGCCCTGCCTGTGGTGCTATCCGCCGCTCCGCGCCTGCCACTTGGCCG
GCATCCACTGCGGCCTCTGCGGCGGGCAGCACAAGCCGCATGTCGCAAGC
TTTCTAGACCAT

BO09801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-RC 1560 CG10155-PC 1..1278 17..1294 6330 99.7 Plus
Spred-RA 1281 CG10155-PA 1..1278 17..1294 6330 99.7 Plus
Spred-RB 1215 CG10155-PB 363..1212 445..1294 4205 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-RC 4167 CG10155-RC 493..1771 16..1294 6335 99.7 Plus
Spred-RA 2657 CG10155-RA 493..1771 16..1294 6335 99.7 Plus
Spred-RB 2525 CG10155-RB 790..1639 445..1294 4205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14762042..14762796 1294..540 3745 99.7 Minus
2R 25286936 2R 14764058..14764239 216..35 895 99.5 Minus
2R 25286936 2R 14763830..14763999 384..215 835 99.4 Minus
2R 25286936 2R 14762919..14763075 539..383 785 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:08:46 has no hits.

BO09801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:26 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 1..1281 17..1297 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:19 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 492..1770 16..1294 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:54 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 494..1771 17..1296 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:26 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 492..1770 16..1294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:53 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 494..1771 17..1296 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:53 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14764060..14764237 37..214 99 <- Minus
2R 14768004..14768023 17..36 100   Minus
2R 14763831..14763999 215..383 99 <- Minus
2R 14762038..14762796 540..1296 99 <- Minus
2R 14762919..14763074 384..539 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:54 Download gff for BO09801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10649543..10650301 540..1296 99 <- Minus
arm_2R 10650424..10650579 384..539 100 <- Minus
arm_2R 10651336..10651504 215..383 99 <- Minus
arm_2R 10651565..10651742 37..214 99 <- Minus
arm_2R 10655509..10655528 17..36 100   Minus

BO09801.pep Sequence

Translation from 16 to 1312

> BO09801.pep
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSVGEDDVFMT
LDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTS
ATTSPPDAPPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPV
GAQVLNARRESISALKKRNALEAAQAMAAAQTAAGGGLACRDGGSGKPLH
KPNVSDILKKETRLRCRYCHELYSEDFNRRGACEYAPDAFRSGYECISGM
GCARCMIYHCMSDAEGETAQHPCDCSASEAGCSKRWLGLAILSLFVPCLW
CYPPLRACHLAGIHCGLCGGQHKPHVASFLDH

BO09801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-PC 519 CG10155-PC 1..426 1..426 2284 100 Plus
Spred-PA 426 CG10155-PA 1..426 1..426 2284 100 Plus
Spred-PB 404 CG10155-PB 1..404 1..426 2133 94.8 Plus
ena-PG 664 CG15112-PG 6..198 10..209 182 26.3 Plus
ena-PD 687 CG15112-PD 6..198 10..209 182 26.3 Plus