Clone Sequence Records
BO09803.3prime Sequence
914 bp (872 high quality bases) assembled on 2006-04-19
> BO09803.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTGCGCCTCTATGACGATTTTCATCA
GCTTGTGTGGAGGTAAAGATTCCAAGAGGCACAGCAGCTGGATCTGATTG
GTGATGCAGTTGGAGCTCAGGGCGATTTGCACTGCTTGGGCGAAGCGTTC
CATGCACTTCTGATATGCGGCATCCGCTTGGGGATCGGTTTTTGATTCCG
CCAGCCGTGCGCAGTAGCTCTGCAGGGATTTCACGATCTGCATAAGATCT
TGACTGGGCAGCGCTGTCGATTCCCCACTGCTGACAAGCTGTTGCAGAGC
ACGCAGGAGGGATAGATGCAAATTGCTATAGGCGGAACGGTTGGAGACCA
ACGGCGCCAGGACCACCCATCGAAGCAGGCCTGCTAGGGGAGTGGTAAAG
GGCATGGCTATGGCTCCGGCGGGCAGGACCAAAGGCTGCTGCGAGGCCTG
ACACAAAGTGGGATTCTCCATCATCCATTCGGTTATGGTGTCCAGCAGAG
CATCTGGCGGTGGATTCAATGTCGGCGAACGCTGCTCATTGAGGTACAGA
TCCGCCACGGCGACCATAAAGTTGGCCGCAAAGTGCGGACCCACCATGGG
CAGCTGCTTGAGTTGCTCGGGGGTTTTCCGGGAGTACGAGATAAAGTCGC
TGACTATATTTTGGGCCACTTCCAGGCTGAGTGGCGTCTTGCACCCCACC
TGTTGCATCCATGTGCCGGCAGAGGAGAGCAGCGGGGCCACGGAGCCGGA
AACTGCTGTGCTGATCAGCCGGGACAACAACTTGGATCGCTGCGGTGTCA
AGTGGCTTCCGAAGAGCGACAGGAATATGGCGTTGCGGGTGGCATCTCTT
CCTGGTCGCGAAAAAGTACTCATCAGCGCTATGATCAGCTGGAACTCCTG
GAACAGATCATCTG
BO09803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PB | 1122 | CG5274-RB | 274..1119 | 864..19 | 4230 | 100 | Minus |
CG5274-PA | 1122 | CG5274-RA | 274..1119 | 864..19 | 4230 | 100 | Minus |
CG5274-PB | 1122 | CG5274-RB | 230..266 | 908..872 | 185 | 100 | Minus |
CG5274-PA | 1122 | CG5274-RA | 230..266 | 908..872 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 284..1173 | 908..19 | 4405 | 99.8 | Minus |
CG5274-RB | 1351 | CG5274-RB | 261..1150 | 908..19 | 4405 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426400..20427289 | 19..908 | 4355 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:25:43 has no hits.
BO09803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:29 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PB | 223..1122 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:53 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PA | 223..1122 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:50 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 254..1155 | 11..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:29 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 254..1155 | 11..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:29 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426395..20427296 | 11..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:50 Download gff for
BO09803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20419495..20420396 | 11..914 | 99 | | Plus |
BO09803.5prime Sequence
857 bp (856 high quality bases) assembled on 2006-04-19
> BO09803.5prime
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTC
BO09803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PB | 1122 | CG5274-RB | 1..841 | 17..857 | 4155 | 99.7 | Plus |
CG5274-PA | 1122 | CG5274-RA | 1..841 | 17..857 | 4155 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 55..895 | 17..857 | 4175 | 99.8 | Plus |
CG5274-RB | 1351 | CG5274-RB | 32..872 | 17..857 | 4175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426678..20427419 | 857..116 | 3695 | 99.9 | Minus |
3L | 28110227 | 3L | 20427471..20427570 | 116..17 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:43:18 has no hits.
BO09803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:30 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PB | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:54 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:39:08 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..872 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:18 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..872 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:18 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426678..20427418 | 117..857 | 99 | <- | Minus |
3L | 20427471..20427570 | 17..116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:39:08 Download gff for
BO09803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20419778..20420518 | 117..857 | 99 | <- | Minus |
arm_3L | 20420571..20420670 | 17..116 | 99 | | Minus |
BO09803.complete Sequence
1153 bp assembled on 2007-10-17
GenBank Submission: FJ631579
> BO09803.complete
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAG
TCAAGATCTTATGCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGC
TGGCGGAATCAAAAACCGATCCCCAAGCGGATGCCGCATATCAGAAGTGC
ATGGAACGCTTCGCCCAAGCAGTGCAAATCGCCCTGAGCTCCAACTGCAT
CACCAATCAGATCCAGCTGCTGTGCCTCTTGGAATCTTTACCTCCACACA
AGCTGATGAAAATCGTCATAGAGGCGCACAAGAAGGCAAGCTTTCTAGAC
CAT
BO09803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1122 | CG5274-PA | 1..1119 | 17..1135 | 5565 | 99.8 | Plus |
CG5274-RB | 1122 | CG5274-PB | 1..1119 | 17..1135 | 5565 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 55..1173 | 17..1135 | 5565 | 99.8 | Plus |
CG5274-RB | 1351 | CG5274-RB | 32..1150 | 17..1135 | 5565 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426400..20427419 | 1135..116 | 5085 | 99.9 | Minus |
3L | 28110227 | 3L | 20427471..20427570 | 116..17 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:54:31 has no hits.
BO09803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:56 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 1..1122 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:17 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 55..1178 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:50 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..1150 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:03 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 55..1173 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:20 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..1150 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:20 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426398..20427418 | 117..1137 | 99 | <- | Minus |
3L | 20427471..20427570 | 17..116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:50 Download gff for
BO09803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20420571..20420670 | 17..116 | 99 | | Minus |
arm_3L | 20419498..20420518 | 117..1137 | 99 | <- | Minus |
BO09803.pep Sequence
Translation from 16 to 1153
> BO09803.pep
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKKASFLDH
BO09803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PA | 373 | CG5274-PA | 1..373 | 1..373 | 1874 | 100 | Plus |
CG5274-PB | 373 | CG5274-PB | 1..373 | 1..373 | 1874 | 100 | Plus |