Clone BO09803 Report

Search the DGRC for BO09803

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG5274-RA
Protein status:BO09803.pep: validated full length
Sequenced Size:1153

Clone Sequence Records

BO09803.3prime Sequence

914 bp (872 high quality bases) assembled on 2006-04-19

> BO09803.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTGCGCCTCTATGACGATTTTCATCA
GCTTGTGTGGAGGTAAAGATTCCAAGAGGCACAGCAGCTGGATCTGATTG
GTGATGCAGTTGGAGCTCAGGGCGATTTGCACTGCTTGGGCGAAGCGTTC
CATGCACTTCTGATATGCGGCATCCGCTTGGGGATCGGTTTTTGATTCCG
CCAGCCGTGCGCAGTAGCTCTGCAGGGATTTCACGATCTGCATAAGATCT
TGACTGGGCAGCGCTGTCGATTCCCCACTGCTGACAAGCTGTTGCAGAGC
ACGCAGGAGGGATAGATGCAAATTGCTATAGGCGGAACGGTTGGAGACCA
ACGGCGCCAGGACCACCCATCGAAGCAGGCCTGCTAGGGGAGTGGTAAAG
GGCATGGCTATGGCTCCGGCGGGCAGGACCAAAGGCTGCTGCGAGGCCTG
ACACAAAGTGGGATTCTCCATCATCCATTCGGTTATGGTGTCCAGCAGAG
CATCTGGCGGTGGATTCAATGTCGGCGAACGCTGCTCATTGAGGTACAGA
TCCGCCACGGCGACCATAAAGTTGGCCGCAAAGTGCGGACCCACCATGGG
CAGCTGCTTGAGTTGCTCGGGGGTTTTCCGGGAGTACGAGATAAAGTCGC
TGACTATATTTTGGGCCACTTCCAGGCTGAGTGGCGTCTTGCACCCCACC
TGTTGCATCCATGTGCCGGCAGAGGAGAGCAGCGGGGCCACGGAGCCGGA
AACTGCTGTGCTGATCAGCCGGGACAACAACTTGGATCGCTGCGGTGTCA
AGTGGCTTCCGAAGAGCGACAGGAATATGGCGTTGCGGGTGGCATCTCTT
CCTGGTCGCGAAAAAGTACTCATCAGCGCTATGATCAGCTGGAACTCCTG
GAACAGATCATCTG

BO09803.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PB 1122 CG5274-RB 274..1119 864..19 4230 100 Minus
CG5274-PA 1122 CG5274-RA 274..1119 864..19 4230 100 Minus
CG5274-PB 1122 CG5274-RB 230..266 908..872 185 100 Minus
CG5274-PA 1122 CG5274-RA 230..266 908..872 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 284..1173 908..19 4405 99.8 Minus
CG5274-RB 1351 CG5274-RB 261..1150 908..19 4405 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426400..20427289 19..908 4355 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:25:43 has no hits.

BO09803.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:29 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PB 223..1122 18..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:53 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PA 223..1122 18..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:50 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 254..1155 11..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:29 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 254..1155 11..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:29 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20426395..20427296 11..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:50 Download gff for BO09803.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20419495..20420396 11..914 99   Plus

BO09803.5prime Sequence

857 bp (856 high quality bases) assembled on 2006-04-19

> BO09803.5prime
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTC

BO09803.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PB 1122 CG5274-RB 1..841 17..857 4155 99.7 Plus
CG5274-PA 1122 CG5274-RA 1..841 17..857 4155 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 55..895 17..857 4175 99.8 Plus
CG5274-RB 1351 CG5274-RB 32..872 17..857 4175 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426678..20427419 857..116 3695 99.9 Minus
3L 28110227 3L 20427471..20427570 116..17 485 99 Minus
Blast to na_te.dros performed on 2015-02-13 07:43:18 has no hits.

BO09803.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:30 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PB 1..841 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:54 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:39:08 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..872 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:18 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..872 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:18 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20426678..20427418 117..857 99 <- Minus
3L 20427471..20427570 17..116 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:39:08 Download gff for BO09803.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20419778..20420518 117..857 99 <- Minus
arm_3L 20420571..20420670 17..116 99   Minus

BO09803.complete Sequence

1153 bp assembled on 2007-10-17

GenBank Submission: FJ631579

> BO09803.complete
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAG
TCAAGATCTTATGCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGC
TGGCGGAATCAAAAACCGATCCCCAAGCGGATGCCGCATATCAGAAGTGC
ATGGAACGCTTCGCCCAAGCAGTGCAAATCGCCCTGAGCTCCAACTGCAT
CACCAATCAGATCCAGCTGCTGTGCCTCTTGGAATCTTTACCTCCACACA
AGCTGATGAAAATCGTCATAGAGGCGCACAAGAAGGCAAGCTTTCTAGAC
CAT

BO09803.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1122 CG5274-PA 1..1119 17..1135 5565 99.8 Plus
CG5274-RB 1122 CG5274-PB 1..1119 17..1135 5565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 55..1173 17..1135 5565 99.8 Plus
CG5274-RB 1351 CG5274-RB 32..1150 17..1135 5565 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426400..20427419 1135..116 5085 99.9 Minus
3L 28110227 3L 20427471..20427570 116..17 485 99 Minus
Blast to na_te.dros performed on 2014-11-26 16:54:31 has no hits.

BO09803.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:56 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1122 17..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:17 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 55..1178 17..1143 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:50 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..1150 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:03 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 55..1173 17..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:20 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..1150 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:20 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20426398..20427418 117..1137 99 <- Minus
3L 20427471..20427570 17..116 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:50 Download gff for BO09803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20420571..20420670 17..116 99   Minus
arm_3L 20419498..20420518 117..1137 99 <- Minus

BO09803.pep Sequence

Translation from 16 to 1153

> BO09803.pep
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKKASFLDH

BO09803.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PA 373 CG5274-PA 1..373 1..373 1874 100 Plus
CG5274-PB 373 CG5274-PB 1..373 1..373 1874 100 Plus