Clone Sequence Records
BO09804.3prime Sequence
929 bp (914 high quality bases) assembled on 2006-04-19
> BO09804.3prime
ATGGTCTAGAAAGCTTGCGACCGGAATTTGACCCATTTTCTTCAGATTGG
GCGACACTGTGAACTTGGCTCCAGTGCTGGCAATGATGTCGTCCACGGTG
TAACCCTCGGCCACCTCGATCAGCGTTAGGCCCACGCCCTTTTCCACCGT
GAAGACAGCCTTCTCCGAGATGATCATGTCGATCACACCCTTGCCAGTGA
GCGGAAGGGAGCAGGTGTCCAGGATCTTGGGGGAACCATCGCGGGCATTG
TGCTCCATGGTGATGATCACCTTGGTGCCAGGCGCAGCCACCAAATCCAT
GGCTCCACCCATTCCCTTAACCAGTTTGCCAGGAATCATCCAGTTGGCCA
GATCGCCTGTGGCCGACACCTCCATGGCGCCCAAAATGGTGATATCCACA
TGACCACCACGGATCATGGCAAAGCTGTCATCGGAGCCAAAGTATGAGGC
TCCGGGCACCACGGTAACACTCTCCTTTCCGGCGTTGATCAAGTCCGGAT
CCACTTTATCCTTGGTGGGGAAGGGTCCCAGGCCCAGGATTCCGTTCTCC
GACTGCAGCATCACGTTCATGCCCTTGGGGATGTAGTTGGAGGAGAGCAC
GGGAATGCCAATGCCCAGATTGGCATACATGCCGTCGTGGAACTCAAGAG
CCACTCGACGGGCAATGCGCTCACGTAAAACCTGGGCGGGATTTGGTGGA
GGAGCGGGTTTGCTGGGATCCTTGGGTTCCGTGATGCGCAAGCGTTCCAC
ACGCTTGTTGTAGTTGGTGCCCTTGAAGATGCGGTTAATGTAGATGCCGG
GCACATGGATCTCATCGGGAGAAAGGGCTCCGATGGGCACGATTTCCTCC
ACTTCGGCCACGGTGATTTTGGCAGCCCTGCACATGGGTGCATTGAAGTT
TCTGGCAGCTTTGTTGAACACCAGATTGC
BO09804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1140-PB | 1509 | CG1140-RB | 596..1506 | 929..19 | 4555 | 100 | Minus |
CG1140-PA | 1551 | CG1140-RA | 638..1548 | 929..19 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCOT-RC | 2006 | CG1140-RC | 967..1877 | 929..19 | 4555 | 100 | Minus |
SCOT-RA | 1768 | CG1140-RA | 729..1639 | 929..19 | 4555 | 100 | Minus |
SCOT-RB | 1966 | CG1140-RB | 927..1837 | 929..19 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1965708..1966307 | 929..330 | 3000 | 100 | Minus |
3L | 28110227 | 3L | 1966365..1966676 | 330..19 | 1560 | 100 | Minus |
Blast to na_te.dros performed 2015-02-01 09:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2521 | 799..756 | 121 | 75 | Minus |
BO09804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:31 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-PB | 596..1509 | 16..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:55 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-PA | 638..1551 | 16..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:17 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RB | 927..1837 | 19..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:26 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCOT-RB | 927..1837 | 19..929 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:26 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1965708..1966306 | 331..929 | 100 | -> | Minus |
3L | 1966365..1966676 | 19..330 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:17 Download gff for
BO09804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1965708..1966306 | 331..929 | 100 | -> | Minus |
arm_3L | 1966365..1966676 | 19..330 | 100 | | Minus |
BO09804.5prime Sequence
948 bp (868 high quality bases) assembled on 2006-04-19
> BO09804.5prime
GAAGTTATCAGTCGACATGCTCTGCCGACTGGTGGGAAACAGGAGTTTGG
GTGCACGATATACCGCCTCCATCAAGGCTATTGCGTGCTACTCCACGTCG
GGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCCATAGATGCTGTGGC
CGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGAATCTGCG
GCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGTCAAGAAC
ATCACTGGCGTTTCCAACAATGGAGGTGTGGACGACACTGGTCTGGGTGT
CCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTATGTCGGCG
AAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGCCGTGGAA
CTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAGGAGCCGG
CATTCCGGCCTTCTACACGCCCACTGGCTACGCCACTCTTGTCCAGGAAG
GCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAGTGGAAATATCCAGC
GAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGATGGAGGA
GTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCCGATCCCT
TGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGCACCCATG
TGCAGGGCTGCCAAAATCACCGTGGCCGAAGTGGAGGAAATCGTGCCCAT
CGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGGCATCTACATTAACC
GCATCTTCAAGGGCACCAACTACAACAAGCGTGTGGAACGCTTGCGCATC
ACGGAACCCAAGGATCCCAGCAAACCCGCTCCTCCCACAAATCCCGCCCA
GGTTTTACGTGAGCGCATTGCCCGTCGAGTGGCTCTTGAGTTCCACGA
BO09804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1140-PA | 1551 | CG1140-RA | 1..932 | 17..948 | 4610 | 99.7 | Plus |
CG1140-PB | 1509 | CG1140-RB | 18..890 | 76..948 | 4315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCOT-RA | 1768 | CG1140-RA | 92..1023 | 17..948 | 4630 | 99.8 | Plus |
SCOT-RC | 2006 | CG1140-RC | 388..1261 | 75..948 | 4340 | 99.8 | Plus |
SCOT-RB | 1966 | CG1140-RB | 349..1221 | 76..948 | 4335 | 99.8 | Plus |
SCOT-RC | 2006 | CG1140-RC | 92..151 | 17..76 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1965328..1966002 | 274..948 | 3345 | 99.7 | Plus |
3L | 28110227 | 3L | 1965073..1965275 | 75..277 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 1964550..1964610 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 03:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2521 | 784..827 | 121 | 75 | Plus |
BO09804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:32 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:57 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-PA | 1..931 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:39 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RA | 82..1022 | 5..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:46 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCOT-RA | 82..1022 | 5..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:46 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1964540..1964609 | 5..76 | 93 | -> | Plus |
3L | 1965075..1965273 | 77..275 | 100 | -> | Plus |
3L | 1965330..1966001 | 276..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:39 Download gff for
BO09804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1964540..1964609 | 5..76 | 93 | -> | Plus |
arm_3L | 1965075..1965273 | 77..275 | 100 | -> | Plus |
arm_3L | 1965330..1966001 | 276..947 | 99 | | Plus |
BO09804.complete Sequence
1582 bp (1582 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631580
> BO09804.complete
GAAGTTATCAGTCGACATGCTCTGCCGACTGGTGGGAAACAGGAGTTTGG
GTGCACGATATACCGCCTCCATCAAGGCTATTGCGTGCTACTCCACGTCG
GGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCCATAGATGCTGTGGC
CGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGAATCTGCG
GCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGTCAAGAAC
ATCACTGGCGTTTCCAACAATGGAGGTGTGGACGACACTGGTCTGGGTGT
CCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTATGTCGGCG
AAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGCCGTGGAA
CTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAGGAGCCGG
CATTCCGGCCTTCTACACGCCCACTGGCTACGCCACTCTTGTCCAGGAAG
GCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAGTGGAAATATCCAGC
GAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGATGGAGGA
GTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCCGATCCCT
TGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGCACCCATG
TGCAGGGCTGCCAAAATCACCGTGGCCGAAGTGGAGGAAATCGTGCCCAT
CGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGGCATCTACATTAACC
GCATCTTCAAGGGCACCAACTACAACAAGCGTGTGGAACGCTTGCGCATC
ACGGAACCCAAGGATCCCAGCAAACCCGCTCCTCCACCAAATCCCGCCCA
GGTTTTACGTGAGCGCATTGCCCGTCGAGTGGCTCTTGAGTTCCACGACG
GCATGTATGCCAATCTGGGCATTGGCATTCCCGTGCTCTCCTCCAACTAC
ATCCCCAAGGGCATGAACGTGATGCTGCAGTCGGAGAACGGAATCCTGGG
CCTGGGACCCTTCCCCACCAAGGATAAAGTGGATCCGGACTTGATCAACG
CCGGAAAGGAGAGTGTTACCGTGGTGCCCGGAGCCTCATACTTTGGCTCC
GATGACAGCTTTGCCATGATCCGTGGTGGTCATGTGGATATCACCATTTT
GGGCGCCATGGAGGTGTCGGCCACAGGCGATCTGGCCAACTGGATGATTC
CTGGCAAACTGGTTAAGGGAATGGGTGGAGCCATGGATTTGGTGGCTGCG
CCTGGCACCAAGGTGATCATCACCATGGAGCACAATGCCCGCGATGGTTC
CCCCAAGATCCTGGACACCTGCTCCCTTCCGCTCACTGGCAAGGGTGTGA
TCGACATGATCATCTCGGAGAAGGCTGTCTTCACGGTGGAAAAGGGCGTG
GGCCTAACGCTGATCGAGGTGGCCGAGGGTTACACCGTGGACGACATCAT
TGCCAGCACTGGAGCCAAGTTCACAGTGTCGCCCAATCTGAAGAAAATGG
GTCAAATTCCGGTCGCAAGCTTTCTAGACCAT
BO09804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCOT-RA | 1551 | CG1140-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
SCOT-RB | 1509 | CG1140-PB | 18..1506 | 76..1564 | 7445 | 100 | Plus |
SCOT-RC | 1353 | CG1140-PC | 1..1350 | 215..1564 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCOT-RA | 1768 | CG1140-RA | 92..1639 | 17..1564 | 7740 | 100 | Plus |
SCOT-RC | 2006 | CG1140-RC | 388..1877 | 75..1564 | 7450 | 100 | Plus |
SCOT-RB | 1966 | CG1140-RB | 349..1837 | 76..1564 | 7445 | 100 | Plus |
SCOT-RC | 2006 | CG1140-RC | 92..151 | 17..76 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1965328..1966307 | 274..1253 | 4900 | 100 | Plus |
3L | 28110227 | 3L | 1966365..1966676 | 1253..1564 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 1965073..1965275 | 75..277 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 1964550..1964610 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2521 | 784..827 | 121 | 75 | Plus |
BO09804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:27 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RA | 1..1551 | 17..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:20 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RA | 71..1628 | 5..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:04 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RA | 92..1639 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:27 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1140-RA | 71..1628 | 5..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:13 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCOT-RA | 92..1639 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:13 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1964550..1964609 | 17..76 | 100 | -> | Plus |
3L | 1965075..1965273 | 77..275 | 100 | -> | Plus |
3L | 1965330..1966306 | 276..1252 | 100 | -> | Plus |
3L | 1966365..1966676 | 1253..1566 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:04 Download gff for
BO09804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1964550..1964609 | 17..76 | 100 | -> | Plus |
arm_3L | 1965075..1965273 | 77..275 | 100 | -> | Plus |
arm_3L | 1965330..1966306 | 276..1252 | 100 | -> | Plus |
arm_3L | 1966365..1966676 | 1253..1566 | 99 | | Plus |
BO09804.pep Sequence
Translation from 16 to 1582
> BO09804.pep
MLCRLVGNRSLGARYTASIKAIACYSTSGKQRNGKIYESAIDAVADVQDG
AQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQK
QVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFY
TPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFAD
FAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSP
DEIHVPGIYINRIFKGTNYNKRVERLRITEPKDPSKPAPPPNPAQVLRER
IARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFP
TKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEV
SATGDLANWMIPGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILD
TCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGA
KFTVSPNLKKMGQIPVASFLDH
BO09804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCOT-PA | 516 | CG1140-PA | 1..516 | 1..516 | 2635 | 100 | Plus |
SCOT-PB | 502 | CG1140-PB | 5..502 | 19..516 | 2536 | 99.6 | Plus |
SCOT-PC | 450 | CG1140-PC | 1..450 | 67..516 | 2296 | 100 | Plus |