Clone BO09804 Report

Search the DGRC for BO09804

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG1140-RA
Protein status:BO09804.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO09804.3prime Sequence

929 bp (914 high quality bases) assembled on 2006-04-19

> BO09804.3prime
ATGGTCTAGAAAGCTTGCGACCGGAATTTGACCCATTTTCTTCAGATTGG
GCGACACTGTGAACTTGGCTCCAGTGCTGGCAATGATGTCGTCCACGGTG
TAACCCTCGGCCACCTCGATCAGCGTTAGGCCCACGCCCTTTTCCACCGT
GAAGACAGCCTTCTCCGAGATGATCATGTCGATCACACCCTTGCCAGTGA
GCGGAAGGGAGCAGGTGTCCAGGATCTTGGGGGAACCATCGCGGGCATTG
TGCTCCATGGTGATGATCACCTTGGTGCCAGGCGCAGCCACCAAATCCAT
GGCTCCACCCATTCCCTTAACCAGTTTGCCAGGAATCATCCAGTTGGCCA
GATCGCCTGTGGCCGACACCTCCATGGCGCCCAAAATGGTGATATCCACA
TGACCACCACGGATCATGGCAAAGCTGTCATCGGAGCCAAAGTATGAGGC
TCCGGGCACCACGGTAACACTCTCCTTTCCGGCGTTGATCAAGTCCGGAT
CCACTTTATCCTTGGTGGGGAAGGGTCCCAGGCCCAGGATTCCGTTCTCC
GACTGCAGCATCACGTTCATGCCCTTGGGGATGTAGTTGGAGGAGAGCAC
GGGAATGCCAATGCCCAGATTGGCATACATGCCGTCGTGGAACTCAAGAG
CCACTCGACGGGCAATGCGCTCACGTAAAACCTGGGCGGGATTTGGTGGA
GGAGCGGGTTTGCTGGGATCCTTGGGTTCCGTGATGCGCAAGCGTTCCAC
ACGCTTGTTGTAGTTGGTGCCCTTGAAGATGCGGTTAATGTAGATGCCGG
GCACATGGATCTCATCGGGAGAAAGGGCTCCGATGGGCACGATTTCCTCC
ACTTCGGCCACGGTGATTTTGGCAGCCCTGCACATGGGTGCATTGAAGTT
TCTGGCAGCTTTGTTGAACACCAGATTGC

BO09804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1140-PB 1509 CG1140-RB 596..1506 929..19 4555 100 Minus
CG1140-PA 1551 CG1140-RA 638..1548 929..19 4555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-RC 2006 CG1140-RC 967..1877 929..19 4555 100 Minus
SCOT-RA 1768 CG1140-RA 729..1639 929..19 4555 100 Minus
SCOT-RB 1966 CG1140-RB 927..1837 929..19 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1965708..1966307 929..330 3000 100 Minus
3L 28110227 3L 1966365..1966676 330..19 1560 100 Minus
Blast to na_te.dros performed 2015-02-01 09:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2521 799..756 121 75 Minus

BO09804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:31 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-PB 596..1509 16..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:55 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-PA 638..1551 16..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:17 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-RB 927..1837 19..929 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:26 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
SCOT-RB 927..1837 19..929 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:26 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1965708..1966306 331..929 100 -> Minus
3L 1966365..1966676 19..330 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:17 Download gff for BO09804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1965708..1966306 331..929 100 -> Minus
arm_3L 1966365..1966676 19..330 100   Minus

BO09804.5prime Sequence

948 bp (868 high quality bases) assembled on 2006-04-19

> BO09804.5prime
GAAGTTATCAGTCGACATGCTCTGCCGACTGGTGGGAAACAGGAGTTTGG
GTGCACGATATACCGCCTCCATCAAGGCTATTGCGTGCTACTCCACGTCG
GGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCCATAGATGCTGTGGC
CGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGAATCTGCG
GCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGTCAAGAAC
ATCACTGGCGTTTCCAACAATGGAGGTGTGGACGACACTGGTCTGGGTGT
CCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTATGTCGGCG
AAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGCCGTGGAA
CTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAGGAGCCGG
CATTCCGGCCTTCTACACGCCCACTGGCTACGCCACTCTTGTCCAGGAAG
GCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAGTGGAAATATCCAGC
GAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGATGGAGGA
GTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCCGATCCCT
TGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGCACCCATG
TGCAGGGCTGCCAAAATCACCGTGGCCGAAGTGGAGGAAATCGTGCCCAT
CGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGGCATCTACATTAACC
GCATCTTCAAGGGCACCAACTACAACAAGCGTGTGGAACGCTTGCGCATC
ACGGAACCCAAGGATCCCAGCAAACCCGCTCCTCCCACAAATCCCGCCCA
GGTTTTACGTGAGCGCATTGCCCGTCGAGTGGCTCTTGAGTTCCACGA

BO09804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1140-PA 1551 CG1140-RA 1..932 17..948 4610 99.7 Plus
CG1140-PB 1509 CG1140-RB 18..890 76..948 4315 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-RA 1768 CG1140-RA 92..1023 17..948 4630 99.8 Plus
SCOT-RC 2006 CG1140-RC 388..1261 75..948 4340 99.8 Plus
SCOT-RB 1966 CG1140-RB 349..1221 76..948 4335 99.8 Plus
SCOT-RC 2006 CG1140-RC 92..151 17..76 300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1965328..1966002 274..948 3345 99.7 Plus
3L 28110227 3L 1965073..1965275 75..277 1015 100 Plus
3L 28110227 3L 1964550..1964610 17..77 305 100 Plus
Blast to na_te.dros performed 2015-02-04 03:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2521 784..827 121 75 Plus

BO09804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:32 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:28:57 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-PA 1..931 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:39 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 82..1022 5..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:46 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
SCOT-RA 82..1022 5..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:46 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1964540..1964609 5..76 93 -> Plus
3L 1965075..1965273 77..275 100 -> Plus
3L 1965330..1966001 276..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:39 Download gff for BO09804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1964540..1964609 5..76 93 -> Plus
arm_3L 1965075..1965273 77..275 100 -> Plus
arm_3L 1965330..1966001 276..947 99   Plus

BO09804.complete Sequence

1582 bp (1582 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631580

> BO09804.complete
GAAGTTATCAGTCGACATGCTCTGCCGACTGGTGGGAAACAGGAGTTTGG
GTGCACGATATACCGCCTCCATCAAGGCTATTGCGTGCTACTCCACGTCG
GGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCCATAGATGCTGTGGC
CGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGAATCTGCG
GCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGTCAAGAAC
ATCACTGGCGTTTCCAACAATGGAGGTGTGGACGACACTGGTCTGGGTGT
CCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTATGTCGGCG
AAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGCCGTGGAA
CTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAGGAGCCGG
CATTCCGGCCTTCTACACGCCCACTGGCTACGCCACTCTTGTCCAGGAAG
GCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAGTGGAAATATCCAGC
GAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGATGGAGGA
GTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCCGATCCCT
TGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGCACCCATG
TGCAGGGCTGCCAAAATCACCGTGGCCGAAGTGGAGGAAATCGTGCCCAT
CGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGGCATCTACATTAACC
GCATCTTCAAGGGCACCAACTACAACAAGCGTGTGGAACGCTTGCGCATC
ACGGAACCCAAGGATCCCAGCAAACCCGCTCCTCCACCAAATCCCGCCCA
GGTTTTACGTGAGCGCATTGCCCGTCGAGTGGCTCTTGAGTTCCACGACG
GCATGTATGCCAATCTGGGCATTGGCATTCCCGTGCTCTCCTCCAACTAC
ATCCCCAAGGGCATGAACGTGATGCTGCAGTCGGAGAACGGAATCCTGGG
CCTGGGACCCTTCCCCACCAAGGATAAAGTGGATCCGGACTTGATCAACG
CCGGAAAGGAGAGTGTTACCGTGGTGCCCGGAGCCTCATACTTTGGCTCC
GATGACAGCTTTGCCATGATCCGTGGTGGTCATGTGGATATCACCATTTT
GGGCGCCATGGAGGTGTCGGCCACAGGCGATCTGGCCAACTGGATGATTC
CTGGCAAACTGGTTAAGGGAATGGGTGGAGCCATGGATTTGGTGGCTGCG
CCTGGCACCAAGGTGATCATCACCATGGAGCACAATGCCCGCGATGGTTC
CCCCAAGATCCTGGACACCTGCTCCCTTCCGCTCACTGGCAAGGGTGTGA
TCGACATGATCATCTCGGAGAAGGCTGTCTTCACGGTGGAAAAGGGCGTG
GGCCTAACGCTGATCGAGGTGGCCGAGGGTTACACCGTGGACGACATCAT
TGCCAGCACTGGAGCCAAGTTCACAGTGTCGCCCAATCTGAAGAAAATGG
GTCAAATTCCGGTCGCAAGCTTTCTAGACCAT

BO09804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-RA 1551 CG1140-PA 1..1548 17..1564 7740 100 Plus
SCOT-RB 1509 CG1140-PB 18..1506 76..1564 7445 100 Plus
SCOT-RC 1353 CG1140-PC 1..1350 215..1564 6750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-RA 1768 CG1140-RA 92..1639 17..1564 7740 100 Plus
SCOT-RC 2006 CG1140-RC 388..1877 75..1564 7450 100 Plus
SCOT-RB 1966 CG1140-RB 349..1837 76..1564 7445 100 Plus
SCOT-RC 2006 CG1140-RC 92..151 17..76 300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1965328..1966307 274..1253 4900 100 Plus
3L 28110227 3L 1966365..1966676 1253..1564 1560 100 Plus
3L 28110227 3L 1965073..1965275 75..277 1015 100 Plus
3L 28110227 3L 1964550..1964610 17..77 305 100 Plus
Blast to na_te.dros performed 2014-11-26 22:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2521 784..827 121 75 Plus

BO09804.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:27 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 1..1551 17..1567 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:20 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 71..1628 5..1564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:04 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 92..1639 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:27 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG1140-RA 71..1628 5..1564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:13 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
SCOT-RA 92..1639 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:13 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1964550..1964609 17..76 100 -> Plus
3L 1965075..1965273 77..275 100 -> Plus
3L 1965330..1966306 276..1252 100 -> Plus
3L 1966365..1966676 1253..1566 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:04 Download gff for BO09804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1964550..1964609 17..76 100 -> Plus
arm_3L 1965075..1965273 77..275 100 -> Plus
arm_3L 1965330..1966306 276..1252 100 -> Plus
arm_3L 1966365..1966676 1253..1566 99   Plus

BO09804.pep Sequence

Translation from 16 to 1582

> BO09804.pep
MLCRLVGNRSLGARYTASIKAIACYSTSGKQRNGKIYESAIDAVADVQDG
AQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQK
QVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFY
TPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFAD
FAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSP
DEIHVPGIYINRIFKGTNYNKRVERLRITEPKDPSKPAPPPNPAQVLRER
IARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFP
TKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEV
SATGDLANWMIPGKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILD
TCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGA
KFTVSPNLKKMGQIPVASFLDH

BO09804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
SCOT-PA 516 CG1140-PA 1..516 1..516 2635 100 Plus
SCOT-PB 502 CG1140-PB 5..502 19..516 2536 99.6 Plus
SCOT-PC 450 CG1140-PC 1..450 67..516 2296 100 Plus