Clone BO09807 Report

Search the DGRC for BO09807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:7
Vector:pDNR-Dual
Associated Gene/Transcriptstv-RA
Protein status:BO09807.pep: validated full length
Sequenced Size:1861

Clone Sequence Records

BO09807.3prime Sequence

915 bp (868 high quality bases) assembled on 2006-04-19

> BO09807.3prime
ATGGTCTAGAAAGCTTGCTTCCGACGTCGTTGTGGTTGTCTCCGACTGAA
CGGCGGACTGTGTCGCCTCCGCGGCGGTGGCTTCCGAAGCAGCTGCGCCC
TCGACGGCAGCAGCATTTGGTGGTGCTGGTAGAGGGATGGGTTCCTGCAT
CTTTGTAGCATCCTGTGGCTGTGGAGTCACTGGCTCCGCATTTTGTCCGG
CCGCTTCCGAGGCAGCAACTGCACCTGTGTCAACCGCTGGAGCTGTTGCG
CTAGGTGCAGGTGCTGCTCCTGATGCCGCTCTGGCATTCTCCTCGGCCTT
GGCCTCCAGCACATTTATCGAAGCCTGAATGCATTTGATAGCCTCCTTTC
GGGCCAGACGAATGCTGTCCTTGCCGTTTGTGTCGATGGTGTCTAGCTTA
AGCAGGTTGCGGGTCAGCATCTCGTCCAGGTAGGCGTACTCCTTCTCCTC
GCGCGTTCCCTTGAACTGCTCCACCTTGCCCATGAGCTCCAGTACGTCGC
GCTGAATGTCCTGGATTTTGTTAATAGAGTTGAGGGTATGTGGTGTCTGT
GGCGGCAATCCAGCGGCTCCCTCAACTGGCACCTGCTGCTCAGGTTGCGC
CTGGGTGTTTAGTGGCGTCGGTCTGTTGTGCTGCTGTGGAGCAGCGTGTG
CCTGTGGCTGCGCCTGCGCATATGCCTGTGCCTGAGCTTGGGCCTGAGCA
CTGGGCGGAGCGTTCTGGTTCGGTATCTCCTTGTGGGCATTGATGATGGG
CTCGGAGCGACCCTCAACAAAGATGGGAATGGTGCGCACATAGGTGCCAC
CCGGGGTCTGTGGAGCTGGCGGCGGGGTCTGCTGCTTTTGCTGGGGATGC
GTCTGCTGGTGCGGCGCATAGTAAGTCTTGAACTGCTGACCCTGAACGGG
CGGACTTGTCTGGGT

BO09807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32130-PA 1830 CG32130-RA 931..1827 915..19 4460 99.8 Minus
CG32130-PB 1551 CG32130-RB 652..1548 915..19 4460 99.8 Minus
CG32130-PC 1629 CG32130-RC 730..1626 915..19 4460 99.8 Minus
CG32130-PD 1551 CG32130-RD 652..1548 915..19 4460 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RG 2499 CG32130-RG 838..1734 915..19 4470 99.9 Minus
stv-RF 3282 CG32130-RF 1621..2517 915..19 4470 99.9 Minus
stv-RE 3357 CG32130-RE 1696..2592 915..19 4470 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481789..13482369 915..335 2890 99.8 Minus
3L 28110227 3L 13482435..13482750 334..19 1580 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:10:35 has no hits.

BO09807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:35 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PC 730..1629 16..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:01 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PD 652..1551 16..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:52 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
stv-RE 1696..2592 19..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:48 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
stv-RE 1696..2592 19..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:48 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13481789..13482369 335..915 99 -> Minus
3L 13482435..13482749 20..334 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:52 Download gff for BO09807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13474889..13475469 335..915 99 -> Minus
arm_3L 13475535..13475849 20..334 100 <- Minus

BO09807.5prime Sequence

914 bp (801 high quality bases) assembled on 2006-04-19

> BO09807.5prime
GAAGTTATCAGTCGACATGAAGCCCACTGTGATGGCGGCCAATCAGGCGC
AAAGCAATCCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGCGGTCCC
GGTGTCAATATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTACGGATC
GCCACAGCAGTCGGCACAGTTCCACACTCCCCAAAACGCTTACGGATCGC
CCAGGCAGCAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCTCCAAAT
CAGCAGCAGCAACATTTTCAGCCGACCTTTGGATTCGAACCGAACATGGA
CATGGACAACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACGATCCCT
TCGCCGGCTTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCAACGATG
GGCCGCCGAGGTCGAATGGCCGGTGGGGCCAACACTCACATGGACCACGA
TGATGACTTCTTTAATCGGCTGCCCTCGGAGTTCCGCCAGTATATCCCAG
ATGGTTTCGGAGGCAGACGTGGTACCGGAGCTGCTCCTGCACCCGGACAA
GTTCCACAGCAGCAACAGCCGCAGCCACAGCCGCAGTACACCCAACAGCA
ACCCCAGACGCACTTCCAGTTCGGTGTGCCGCCCCAGCAACAGCCAGTCT
ATGCCGGACCAACCCAGCAGCAGGTGCCGCAGACGCCTTCAAAGCGCCTT
TGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA
TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCG
ACATGGGCGTGAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCAC
TCCGCCCCTCCGCCAGAGCAGCAGCAGCAGAATCTGCAGTATCACCAGCA
GCAGCAACAGCATC

BO09807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32130-PA 1830 CG32130-RA 1..898 17..914 4490 100 Plus
CG32130-PB 1551 CG32130-RB 1..619 296..914 3095 100 Plus
CG32130-PD 1551 CG32130-RD 1..619 296..914 3095 100 Plus
CG32130-PC 1629 CG32130-RC 155..697 372..914 2715 100 Plus
CG32130-PC 1629 CG32130-RC 1..76 296..371 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 3279 CG32130-RA 687..1585 16..914 4495 100 Plus
stv-RF 3282 CG32130-RF 687..1588 16..914 4455 99.7 Plus
stv-RG 2499 CG32130-RG 160..805 269..914 3230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481201..13481756 359..914 2720 99.3 Plus
3L 28110227 3L 13478227..13478482 16..271 1280 100 Plus
3L 28110227 3L 13481033..13481135 269..371 515 100 Plus
Blast to na_te.dros performed 2015-02-02 12:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6892 557..646 178 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6861 541..681 166 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6958 524..688 147 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6885 557..681 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6812..6950 557..695 136 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1160 524..602 136 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2416 557..612 135 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2378 554..607 133 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2866 529..612 132 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1095..1146 558..612 132 76.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2829 558..602 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6854 557..686 126 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6902 557..683 123 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6946 547..646 120 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1584 547..602 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2412..2539 557..681 117 60.8 Plus

BO09807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:36 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:02 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:59:51 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
stv-RA 681..1585 7..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:40:55 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
stv-RA 681..1585 7..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:40:55 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13478221..13478482 7..271 98 -> Plus
3L 13481036..13481135 272..371 100 -> Plus
3L 13481214..13481756 372..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:59:51 Download gff for BO09807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13471321..13471582 7..271 98 -> Plus
arm_3L 13474136..13474235 272..371 100 -> Plus
arm_3L 13474314..13474856 372..914 100   Plus

BO09807.complete Sequence

1861 bp assembled on 2007-10-26

GenBank Submission: FJ631581

> BO09807.complete
GAAGTTATCAGTCGACATGAAGCCCACTGTGATGGCGGCCAATCAGGCGC
AAAGCAATCCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGCGGTCCC
GGTGTCAATATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTACGGATC
GCCACAGCAGTCGGCACAGTTCCACACTCCCCAAAACGCTTACGGATCGC
CCAGGCAGCAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCTCCAAAT
CAGCAGCAGCAACATTTTCAGCCGACCTTTGGATTCGAACCGAACATGGA
CATGGACAACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACGATCCCT
TCGCCGGCTTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCAACGATG
GGCCGCCGAGGTCGAATGGCCGGTGGGGCCAACACTCACATGGACCACGA
TGATGACTTCTTTAATCGGCTGCCCTCGGAGTTCCGCCAGTATATCCCAG
ATGGTTTCGGAGGCAGACGTGGTACCGGAGCTGCTCCTGCACCCGGACAA
GTTCCACAGCAGCAACAGCCGCAGCCACAGCCGCAGTACACCCAACAGCA
ACCCCAGACGCACTTCCAGTTCGGTGTGCCGCCCCAGCAACAGCCAGTCT
ATGCCGGACCAACCCAGCAGCAGGTGCCGCAGACGCCTTCAAAGCGCCTT
TGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA
TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCG
ACATGGGCGTGAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCAC
TCCGCCCCTCCGCCAGAGCAGCAGCAGCAGAATCTGCAGTATCACCAGCA
GCAGCAACAGCATCAGCAACCGGGAGTACATAGCCAACCGTTTGGCACCC
AGACAAGTCCGCCCGTTCAGGGTCAGCAGTTCAAGACTTACTATGCGCCG
CACCAGCAGACGCATCCCCAGCAAAAGCAGCAGACCCCGCCGCCAGCTCC
ACAGACCCCGGGTGGCACCTATGTGCGCACCATTCCCATCTTTGTTGAGG
GTCGCTCCGAGCCCATCATCAATGCCCACAAGGAGATACCGAACCAGAAC
GCTCCGCCCAGTGCTCAGGCCCAAGCTCAGGCACAGGCATATGCGCAGGC
GCAGCCACAGGCACACGCTGCTCCACAGCAGCACAACAGACCGACGCCAC
TAAACACCCAGGCGCAACCTGAGCAGCAGGTGCCAGTTGAGGGAGCCGCT
GGATTGCCGCCACAGACACCACATACCCTCAACTCTATTAACAAAATCCA
GGACATTCAGCGCGACGTACTGGAGCTCATGGGCAAGGTGGAGCAGTTCA
AGGGAACGCGCGAGGAGAAGGAGTACGCCTACCTGGACGAGATGCTGACC
CGCAACCTGCTTAAGCTAGACACCATCGACACAAACGGCAAGGACAGCAT
TCGTCTGGCCCGAAAGGAGGCTATCAAATGCATTCAGGCTTCGATAAATG
TGCTGGAGGCCAAGGCCGAGGAGAATGCCAGAGCGGCATCAGGAGCAGCA
CCTGCACCTAGCGCAACAGCTCCAGCGGTTGACACAGGTGCAGTTGCTGC
CTCGGAAGCGGCCGGACAAAATGCGGAGCCAGTGACTCCACAGCCACAGG
ATGCTACAAAGATGCAGGAACCCATCCCTCTACCAGCACCACCAAATGCT
GCTGCCGTCGAGGGCGCAGCTGCTTCGGAAGCCACCGCCGCGGAGGCGAC
ACAGTCCGCCGTTCAGTCGGAGACAACCACAACGACGTCGGAAGCAAGCT
TTCTAGACCAT

BO09807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 1830 CG32130-PA 1..1827 17..1843 9120 99.9 Plus
stv-RF 1833 CG32130-PF 1..1830 17..1843 9055 99.8 Plus
stv-RG 1551 CG32130-PG 1..1548 296..1843 7725 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 3279 CG32130-RA 687..2514 16..1843 9125 99.9 Plus
stv-RF 3282 CG32130-RF 687..2517 16..1843 9060 99.8 Plus
stv-RG 2499 CG32130-RG 160..1734 269..1843 7860 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481201..13482369 359..1527 5770 99.6 Plus
3L 28110227 3L 13482435..13482750 1528..1843 1580 100 Plus
3L 28110227 3L 13478227..13478482 16..271 1280 100 Plus
3L 28110227 3L 13481033..13481135 269..371 515 100 Plus
Blast to na_te.dros performed 2014-11-27 13:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6892 557..646 178 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6861 541..681 166 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6958 524..688 147 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6885 557..681 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6812..6950 557..695 136 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1160 524..602 136 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2416 557..612 135 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2378 554..607 133 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2866 529..612 132 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1095..1146 558..612 132 76.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2829 558..602 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6854 557..686 126 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6946 547..646 120 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1584 547..602 118 67.9 Plus

BO09807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:57 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 1..1830 17..1846 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:18 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 669..2502 7..1843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:22:51 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 688..2514 17..1845 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:01 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 676..2502 17..1845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:08 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 688..2514 17..1845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:08 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13482435..13482750 1528..1845 99   Plus
3L 13478228..13478482 17..271 100 -> Plus
3L 13481036..13481135 272..371 100 -> Plus
3L 13481214..13482369 372..1527 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:22:51 Download gff for BO09807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13471328..13471582 17..271 100 -> Plus
arm_3L 13474136..13474235 272..371 100 -> Plus
arm_3L 13474314..13475469 372..1527 99 -> Plus
arm_3L 13475535..13475850 1528..1845 99   Plus

BO09807.pep Sequence

Translation from 16 to 1861

> BO09807.pep
MKPTVMAANQAQSNPATAAGNNVSPGGPGVNIPVNREYVSGGYGSPQQSA
QFHTPQNAYGSPRQQQQHFQQHQQVPPNQQQQHFQPTFGFEPNMDMDNMF
PRSHLGRMHDPFAGFGDSHFGFPRFSTMGRRGRMAGGANTHMDHDDDFFN
RLPSEFRQYIPDGFGGRRGTGAAPAPGQVPQQQQPQPQPQYTQQQPQTHF
QFGVPPQQQPVYAGPTQQQVPQTPSKRLCDAAIQTEDPAGRSEVDCAPPT
NLNQHGLRNTVDMGVKSVAEQDQGLRSHSAPPPEQQQQNLQYHQQQQQHQ
QPGVHSQPFGTQTSPPVQGQQFKTYYAPHQQTHPQQKQQTPPPAPQTPGG
TYVRTIPIFVEGRSEPIINAHKEIPNQNAPPSAQAQAQAQAYAQAQPQAH
AAPQQHNRPTPLNTQAQPEQQVPVEGAAGLPPQTPHTLNSINKIQDIQRD
VLELMGKVEQFKGTREEKEYAYLDEMLTRNLLKLDTIDTNGKDSIRLARK
EAIKCIQASINVLEAKAEENARAASGAAPAPSATAPAVDTGAVAASEAAG
QNAEPVTPQPQDATKMQEPIPLPAPPNAAAVEGAAASEATAAEATQSAVQ
SETTTTTSEASFLDH

BO09807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
stv-PA 609 CG32130-PA 1..609 1..609 3240 100 Plus
stv-PF 610 CG32130-PF 1..610 1..609 3228 99.8 Plus
stv-PE 635 CG32130-PE 1..635 1..609 3195 95.7 Plus
stv-PG 516 CG32130-PG 1..516 94..609 2731 100 Plus
stv-PD 516 CG32130-PD 1..516 94..609 2731 100 Plus