Clone Sequence Records
BO09810.3prime Sequence
776 bp (775 high quality bases) assembled on 2006-04-19
> BO09810.3prime
ATGGTCTAGAAAGCTTGCGTTGGATTTGCGCTTGGCCAACTTCACTTCCT
TGGCCCAGACGGTATTGTTGAGGAACTCGCCCAGCAGGTAAAGTGACAGC
GTGAATCCAACGACGGCCGCAAAAAACAGGATGCGTTGCGGAAGCTGGAG
AACCTCGAGCACTGGATACACCCACACACCCGAGTAGTGCTTCACCACGT
GAATCCAAACCAGGTAGGCGCCCATGAAAATGGCCAGTCCTGCGAGTCCT
TGGCTTCGTTTTGGGTACGACCTGTACGAGATGAACAGCTCCAGGATGAT
GAAAACCACTATGTTGGTGTGCAGGACGTGGTTGAGCCAGCTGGGGAACA
CGGGGTCCAGAACCTTGGGGAAGACTAGCTCCCTGTCGATAGCGTACAGT
GTCCAGAAGGTCACGCCCACATTGATAGCCACTGGAAAGGCCAATGTAGC
CATCAGCCAGTCCTTGAACCTGCGAACCGCCGGAGGTTTCTTGGGTGTCA
GCTCATTAGTGCCCACGAAATCGTTGACCAGCGATACAATATAGTACAGT
GCCTGAATTATCGCATCCAGGAACGTTAGGTATTTGAATTTGCCCCCCCA
GGGATGATGGATCCTCATCTCTGGCTCGCTGGTGGGGAACTGCACGTAGT
TGTAGTCGTAATAGATGCCGTAGCCAAATTGCACGACTGCCGTCAGGTGG
AGCAGGGTCCTCAGAGCCCCGTAGACGCCCTGGTACACGGAGTTGCCTCG
CACGGATGCCATGTCGACTGATAACT
BO09810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 747 | CG3625-RB | 1..744 | 762..19 | 3720 | 100 | Minus |
CG3625-PA | 738 | CG3625-RA | 189..735 | 565..19 | 2735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..837 | 762..19 | 3720 | 100 | Minus |
CG3625-RA | 995 | CG3625-RA | 222..768 | 565..19 | 2735 | 100 | Minus |
CG3625-RE | 1401 | CG3625-RE | 354..897 | 562..19 | 2720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283889..284213 | 19..343 | 1625 | 100 | Plus |
2L | 23513712 | 2L | 284748..284969 | 341..562 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 285428..285633 | 557..762 | 1015 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:22:53 has no hits.
BO09810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:41 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:09 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:41 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 87..837 | 19..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:01:30 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 87..837 | 19..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:01:30 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 283889..284210 | 19..340 | 100 | <- | Plus |
2L | 284748..284968 | 341..561 | 100 | <- | Plus |
2L | 285433..285640 | 562..770 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:41 Download gff for
BO09810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283889..284210 | 19..340 | 100 | <- | Plus |
arm_2L | 284748..284968 | 341..561 | 100 | <- | Plus |
arm_2L | 285433..285640 | 562..770 | 98 | | Plus |
BO09810.5prime Sequence
776 bp (775 high quality bases) assembled on 2006-04-19
> BO09810.5prime
GAAGTTATCAGTCGACATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACGCAAGCTTTCTAGACC
BO09810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 747 | CG3625-RB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG3625-PA | 738 | CG3625-RA | 189..735 | 214..760 | 2735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..837 | 17..760 | 3720 | 100 | Plus |
CG3625-RA | 995 | CG3625-RA | 222..768 | 214..760 | 2735 | 100 | Plus |
CG3625-RE | 1401 | CG3625-RE | 354..897 | 217..760 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283889..284213 | 760..436 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 284748..284969 | 438..217 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 285428..285633 | 222..17 | 1015 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:57:07 has no hits.
BO09810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:41 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:10 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:45 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 87..837 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:17 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 87..837 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:17 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 283889..284210 | 439..760 | 100 | <- | Minus |
2L | 284748..284968 | 218..438 | 100 | <- | Minus |
2L | 285433..285640 | 9..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:45 Download gff for
BO09810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283889..284210 | 439..760 | 100 | <- | Minus |
arm_2L | 284748..284968 | 218..438 | 100 | <- | Minus |
arm_2L | 285433..285640 | 9..217 | 98 | | Minus |
BO09810.complete Sequence
778 bp (778 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631582
> BO09810.complete
GAAGTTATCAGTCGACATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACGCAAGCTTTCTAGACCAT
BO09810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 747 | CG3625-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG3625-RA | 738 | CG3625-PA | 189..735 | 214..760 | 2735 | 100 | Plus |
CG3625-RE | 744 | CG3625-PE | 198..741 | 217..760 | 2720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..837 | 17..760 | 3720 | 100 | Plus |
CG3625-RA | 995 | CG3625-RA | 222..768 | 214..760 | 2735 | 100 | Plus |
CG3625-RE | 1401 | CG3625-RE | 354..897 | 217..760 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283889..284213 | 760..436 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 284748..284969 | 438..217 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 285428..285633 | 222..17 | 1015 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:07 has no hits.
BO09810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:42 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:09 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 137..887 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:49 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..837 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:42 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 137..887 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:32 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..837 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:32 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 283887..284210 | 439..762 | 99 | <- | Minus |
2L | 284748..284968 | 218..438 | 100 | <- | Minus |
2L | 285433..285633 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:49 Download gff for
BO09810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283887..284210 | 439..762 | 99 | <- | Minus |
arm_2L | 284748..284968 | 218..438 | 100 | <- | Minus |
arm_2L | 285433..285633 | 17..217 | 100 | | Minus |
BO09810.pep Sequence
Translation from 16 to 778
> BO09810.pep
MASVRGNSVYQGVYGALRTLLHLTAVVQFGYGIYYDYNYVQFPTSEPEMR
IHHPWGGKFKYLTFLDAIIQALYYIVSLVNDFVGTNELTPKKPPAVRRFK
DWLMATLAFPVAINVGVTFWTLYAIDRELVFPKVLDPVFPSWLNHVLHTN
IVVFIILELFISYRSYPKRSQGLAGLAIFMGAYLVWIHVVKHYSGVWVYP
VLEVLQLPQRILFFAAVVGFTLSLYLLGEFLNNTVWAKEVKLAKRKSNAS
FLDH
BO09810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 248 | CG3625-PB | 1..248 | 1..248 | 1308 | 100 | Plus |
CG3625-PA | 245 | CG3625-PA | 8..245 | 3..248 | 1049 | 84.1 | Plus |
CG3625-PE | 247 | CG3625-PE | 14..247 | 19..248 | 998 | 84.2 | Plus |
CG3625-PC | 247 | CG3625-PC | 14..247 | 19..248 | 998 | 84.2 | Plus |
CG11601-PC | 275 | CG11601-PC | 29..270 | 7..246 | 638 | 48.4 | Plus |