Clone Sequence Records
BO09817.3prime Sequence
889 bp (774 high quality bases) assembled on 2006-04-19
> BO09817.3prime
ATGGTCTAGAAAGCTTGCCAAATGGTGGCGTATAGTCCGTGAGAATTTAT
GATAGTTCCAATCCATCCACTGCACATTCGTGAGCATCGTCTCCAGGCTC
TGCTGCATCGCCTGACGAATGCCCTTCAGGAAATGTCGGGAATCGTTGGC
AAAGGACCTGAACTTGTTCAGATCATTTATTGTGCTAACTTGCTCGGATA
ACGGCGTCAACAGTCGGGACATGACTCTCGTCTGCGGATAATAGTATTTG
TGGATAAGCTCAACATTCTCTATGAAGTACTGCTTGGCCAGGAGGAAGCC
CACCTCTCTGGAGGCCACCGCCTGAAAGCACAGCGATGAGTCCTGCTTGC
GAATGGCGCTCTTGGGGTGGAAGGACTTTTCCATGTAACGCTGCAGTATC
CAAACCTCCTTCGAGCAGCCCAGGGTACTCAAGATGGTCTGCCTCTCGGA
TGCCACATTTGATTTCCGGTACCGCGACCACAGGAAGTTCCAATCCTCCT
CTGTGCCTTGACTTATTGCGGTGCAGTACACTGTGCTGCGAAGGTTTAAT
GGAACCGGATGGTTCTCGTCAGGATTGGTCTCTGCCCGCCATCGGCGAAA
ATAGGCCTGCGCCTGGGTCACACAATCGGAAACATCGTACTGGCACGCCA
CATTGACCACCGTGGTCTTCAAAAGGACCTCATCCTGCTGCGTCATCAAA
CTAAAGGTGTCGTTCATGCCGTGCAGGTGCTCGTAGATCGGAGTAAGAAG
CTTCTGCATGTAGCGTTTAAATGACCCAAAGTTGGGAGTTTGTCGCAGAA
TGCGGTTCAACAACTTCAAATTGTCCAGGGCTGATTTCCAAGGAATAAGG
TCTCGTTCCCTCCGCAAATAGTTGGTCACTTGCAGTGCG
BO09817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-PA | 2784 | CG31445-RA | 1911..2781 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 3171 | CG31445-RB | 2107..2977 | 889..19 | 4355 | 100 | Minus |
| CG31445-RA | 3033 | CG31445-RA | 1969..2839 | 889..19 | 4355 | 100 | Minus |
| SP1029-RE | 2981 | CG11956-RE | 2063..2819 | 805..49 | 785 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29241055..29241575 | 245..765 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 29240774..29240999 | 19..244 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 29245410..29245903 | 272..765 | 700 | 76.1 | Plus |
| 3R | 32079331 | 3R | 29241634..29241757 | 766..889 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 29235792..29235945 | 378..531 | 185 | 74.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:37:47 has no hits.
BO09817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:54 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-PA | 1911..2784 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:30 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-PA | 1911..2784 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:31:48 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 1969..2846 | 12..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:17:00 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 1969..2846 | 12..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:17:00 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29240767..29240999 | 12..244 | 98 | <- | Plus |
| 3R | 29241055..29241575 | 245..765 | 100 | <- | Plus |
| 3R | 29241634..29241757 | 766..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:31:48 Download gff for
BO09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25066489..25066721 | 12..244 | 98 | <- | Plus |
| arm_3R | 25066777..25067297 | 245..765 | 100 | <- | Plus |
| arm_3R | 25067356..25067479 | 766..889 | 100 | | Plus |
BO09817.5prime Sequence
879 bp (863 high quality bases) assembled on 2006-04-19
> BO09817.5prime
GAAGTTATCAGTCGACATGAAGTGGTTTCTCTTGTTCGTTCTGGCTATTG
GCCTGGATTTATCTGTGGCCAACTCGATTTCTAGGTATAACCACTACCGA
CTGCCAACTGCCTTAAGACCCCAAAGGTATTACTTACGTATCCTGACACT
TTTGGAAAGTCCTGATGATCTCCGTTTCGCTGGAAATGTGCAAATCGTGA
TTAAAGCACTGCAAAATACCAGGAACATAACGCTGCACTCGAAGAACCTG
ACCATCGATGAGTCCCGGATCACGCTGCGCCAAATTAGTGGAGCGGGAAA
TATGGATAATTGTGTATCCTCCACATCCGTTAATCCCACCCACGACTATT
ACATCTTTCACACCTGCAAGGAACTTTTGGCCGGCAATGTATACAAACTG
TTCCTTCCATTCTCGGCTGATCTAACACCTCAACTTTTTGGTTACTACCG
CAGTTCGTACAAGGATCCTGTGACCAACAAGACACGCTGGCTGTCTGCGA
CGCAATTCGAACCATCCTCCGCTCGAAAGGCATTTCCCTGCTTCGATGAA
CCCGGTTTTAAGGCATCCTTCGTGGTCACTTTGGGCTATCACAAGCAGTT
CAATGCACTGAGCAATATGCCCGTAAGGGAAATCAGGCCACACGAGTCCC
TTGCAAACTACATATGGTGCGAGTTCCAGGAGTCGGTGCCAATGTCCACC
TATCTGGTGGCATATTCGGTTAATGATTTCTCCTTTAAACCCTCCACTCT
GCCAAATGGAGCTCTATTCCGGACTTGGGCCAGACCCAATGCCATAGATC
AGTGCGATTATGCCGCGGAGTTTGGACCCAAAGTGCTGCAATACTATGAG
GAGTTCTTCGGCATTAGGTATCCGCTTCC
BO09817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-PA | 2784 | CG31445-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 739..863 | 740..864 | 350 | 91.2 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 739..863 | 740..864 | 350 | 91.2 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 739..863 | 740..864 | 350 | 91.2 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 656..707 | 657..708 | 210 | 96.1 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 656..707 | 657..708 | 210 | 96.1 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 656..707 | 657..708 | 210 | 96.1 | Plus |
| CG11956-PA | 2799 | SP1029-RA | 227..281 | 228..282 | 175 | 92.7 | Plus |
| CG11956-PB | 2799 | SP1029-RB | 227..281 | 228..282 | 175 | 92.7 | Plus |
| CG11956-PC | 2799 | SP1029-RC | 227..281 | 228..282 | 175 | 92.7 | Plus |
| CG11951-PA | 2445 | CG11951-RA | 754..842 | 776..864 | 170 | 87.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 3171 | CG31445-RB | 197..1059 | 17..879 | 4315 | 100 | Plus |
| CG31445-RA | 3033 | CG31445-RA | 59..921 | 17..879 | 4315 | 100 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 246..916 | 194..864 | 1150 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29243369..29243842 | 490..17 | 2355 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29242858..29243094 | 879..643 | 1185 | 100 | Minus |
| 3R | 32079331 | 3R | 29243158..29243314 | 642..486 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 29247420..29247627 | 864..657 | 680 | 88.5 | Minus |
| 3R | 32079331 | 3R | 29237147..29237353 | 879..673 | 480 | 82.1 | Minus |
| 3R | 32079331 | 3R | 29247931..29248214 | 477..194 | 430 | 76.8 | Minus |
| 3R | 32079331 | 3R | 29237447..29237568 | 642..521 | 235 | 79.5 | Minus |
| 3R | 32079331 | 3R | 29239267..29239335 | 727..659 | 195 | 85.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:54:43 has no hits.
BO09817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:21:56 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:31 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-PA | 1..863 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:12 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..921 | 12..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:08 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..921 | 12..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:08 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29242858..29243094 | 643..879 | 100 | <- | Minus |
| 3R | 29243158..29243313 | 487..642 | 100 | <- | Minus |
| 3R | 29243373..29243854 | 8..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:12 Download gff for
BO09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25068580..25068816 | 643..879 | 100 | <- | Minus |
| arm_3R | 25068880..25069035 | 487..642 | 100 | <- | Minus |
| arm_3R | 25069095..25069576 | 8..486 | 99 | | Minus |
BO09817.complete Sequence
2815 bp (2815 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631584
> BO09817.complete
GAAGTTATCAGTCGACATGAAGTGGTTTCTCTTGTTCGTTCTGGCTATTG
GCCTGGATTTATCTGTGGCCAACTCGATTTCTAGGTATAACCACTACCGA
CTGCCAACTGCCTTAAGACCCCAAAGGTATTACTTACGTATCCTGACACT
TTTGGAAAGTCCTGATGATCTCCGTTTCGCTGGAAATGTGCAAATCGTGA
TTAAAGCACTGCAAAATACCAGGAACATAACGCTGCACTCGAAGAACCTG
ACCATCGATGAGTCCCGGATCACGCTGCGCCAAATTAGTGGAGCGGGAAA
TATGGATAATTGTGTATCCTCCACATCCGTTAATCCCACCCACGACTATT
ACATCTTTCACACCTGCAAGGAACTTTTGGCCGGCAATGTATACAAACTG
TTCCTTCCATTCTCGGCTGATCTAACACCTCAACTTTTTGGTTACTACCG
CAGTTCGTACAAGGATCCTGTGACCAACAAGACACGCTGGCTGTCTGCGA
CGCAATTCGAACCATCCTCCGCTCGAAAGGCATTTCCCTGCTTCGATGAA
CCCGGTTTTAAGGCATCCTTCGTGGTCACTTTGGGCTATCACAAGCAGTT
CAATGCACTGAGCAATATGCCCGTAAGGGAAATCAGGCCACACGAGTCCC
TTGCAAACTACATATGGTGCGAGTTCCAGGAGTCGGTGCCAATGTCCACC
TATCTGGTGGCATATTCGGTTAATGATTTCTCCTTTAAACCCTCCACTCT
GCCAAATGGAGCTCTATTCCGGACTTGGGCCAGACCCAATGCCATAGATC
AGTGCGATTATGCCGCGGAGTTTGGACCCAAAGTGCTGCAATACTATGAG
GAGTTCTTCGGCATTAGGTATCCGCTTCCCAAGATCGATCAGATGGCTGT
TCCGGATTTCAGCGCTGGTGCCATGGAGAACTGGGGTCTGGTCAAATACA
GAGAATCCACACTTCTCTACTCGCCAACCCACTCATCACTGGCGGATAAA
CAGGATCTGGCCAATGTAATAGCTCATGAGTTGGCCCACCAATGGTTCGG
TAATCTGGTGACGATGAAGTGGTGGACCGACCTCTGGCTAAACGAGGGAT
TCGCCACATATGTGGCCGGCTTGGGAGTACAGGAAATCTATCCGGAGTGG
CACTCAAGGGATAAGGGCTCGCTGACAGCTCTGATGACCGCCTTTCGCCT
GGACTCACTGGTTAGCAGCCATCCCATATCGAGGCCCATTCAAATGGTGA
CGGAGATCGAGGAAAGCTTTGATGCCATCTCTTACCAAAAGGGATCCGCA
GTGTTACGAATGATGCACTTGTTCATGGGCGAGGAGTCCTTCCGTACGGG
GCTAAGGGAGTATCTTAAGCTTTACGCCTACAAGAATGCCGAACAGAATA
ATCTATGGGAGTCACTGACCACAGCAGCTCATCAAAATGGAGCTCTACCC
GGGCACTATGACATAAATACCATTATGGACTCGTGGACTCTGCAAACCGG
ATTTCCTGTGCTTAATATTACCCGTGACTATTCGACTGGAACCGCTGAGA
TTACCCAGGAACGTTACTTGCGCAATTCCCAGATACCACAAGCCGACCGC
GTTGGCTGCTGGTGGGTGCCACTGAGCTATACCACCCAGGATGAGAATGA
CTTCAATAACACGTCACCCAAGGCGTGGATGGAGTGCAGCAGTACGGACG
AAGGTGTGCCTACGACCATTGATCATTCAGCTGGACCCGAAGAATGGCTG
ATCCTCAACATACAGTTGTCGACTCCTTACAAGGCCAACTATGATGCCAG
AAACTGGAAGCTGTTGATTGATACTTTGAACAGCAAAGATTTCCAGAGCA
TTCACGTGATCAACAGAGCCCAGCTTATAGACGATGTTCTGTACTTCGCC
TGGACGGGGGAACAGGACTACGAAACCGCACTGCAAGTGACCAACTATTT
GCGGAGGGAACGAGACCTTATTCCTTGGAAATCAGCCCTGGACAATTTGA
AGTTGTTGAACCGCATTCTGCGACAAACTCCCAACTTTGGGTCATTTAAA
CGCTACATGCAGAAGCTTCTTACTCCGATCTACGAGCACCTGCACGGCAT
GAACGACACCTTTAGTTTGATGACGCAGCAGGATGAGGTCCTTTTGAAGA
CCACGGTGGTCAATGTGGCGTGCCAGTACGATGTTTCCGATTGTGTGACC
CAGGCGCAGGCCTATTTTCGCCGATGGCGGGCAGAGACCAATCCTGACGA
GAACCATCCGGTTCCATTAAACCTTCGCAGCACAGTGTACTGCACCGCAA
TAAGTCAAGGCACAGAGGAGGATTGGAACTTCCTGTGGTCGCGGTACCGG
AAATCAAATGTGGCATCCGAGAGGCAGACCATCTTGAGTACCCTGGGCTG
CTCGAAGGAGGTTTGGATACTGCAGCGTTACATGGAAAAGTCCTTCCACC
CCAAGAGCGCCATTCGCAAGCAGGACTCATCGCTGTGCTTTCAGGCGGTG
GCCTCCAGAGAGGTGGGCTTCCTCCTGGCCAAGCAGTACTTCATAGAGAA
TGTTGAGCTTATCCACAAATACTATTATCCGCAGACGAGAGTCATGTCCC
GACTGTTGACGCCGTTATCCGAGCAAGTTAGCACAATAAATGATCTGAAC
AAGTTCAGGTCCTTTGCCAACGATTCCCGACATTTCCTGAAGGGCATTCG
TCAGGCGATGCAGCAGAGCCTGGAGACGATGCTCACGAATGTGCAGTGGA
TGGATTGGAACTATCATAAATTCTCACGGACTATACGCCACCATTTGGCA
AGCTTTCTAGACCAT
BO09817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 2784 | CG31445-PB | 1..2781 | 17..2797 | 13905 | 100 | Plus |
| CG31445-RA | 2784 | CG31445-PA | 1..2781 | 17..2797 | 13905 | 100 | Plus |
| SP1029-RE | 2799 | CG11956-PE | 193..2766 | 194..2767 | 3210 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-RB | 3171 | CG31445-RB | 197..2977 | 17..2797 | 13905 | 100 | Plus |
| CG31445-RA | 3033 | CG31445-RA | 59..2839 | 17..2797 | 13905 | 100 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 246..2819 | 194..2767 | 3210 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29242237..29243094 | 1500..643 | 4290 | 100 | Minus |
| 3R | 32079331 | 3R | 29241634..29242184 | 2050..1500 | 2755 | 100 | Minus |
| 3R | 32079331 | 3R | 29241055..29241575 | 2571..2051 | 2605 | 100 | Minus |
| 3R | 32079331 | 3R | 29243369..29243842 | 490..17 | 2355 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29246787..29247627 | 1497..657 | 1670 | 79.9 | Minus |
| 3R | 32079331 | 3R | 29240774..29240999 | 2797..2572 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 29236606..29237353 | 1420..673 | 935 | 75 | Minus |
| 3R | 32079331 | 3R | 29243158..29243314 | 642..486 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 29245410..29245903 | 2544..2051 | 700 | 76.1 | Minus |
| 3R | 32079331 | 3R | 29236238..29236499 | 2042..1781 | 500 | 79.4 | Minus |
| 3R | 32079331 | 3R | 29246302..29246618 | 1923..1607 | 460 | 76.3 | Minus |
| 3R | 32079331 | 3R | 29247931..29248214 | 477..194 | 430 | 76.8 | Minus |
| 3R | 32079331 | 3R | 29237447..29237568 | 642..521 | 235 | 79.5 | Minus |
| 3R | 32079331 | 3R | 13300352..13300432 | 1025..1105 | 225 | 85.2 | Plus |
| 3R | 32079331 | 3R | 13310684..13310763 | 1025..1104 | 220 | 85 | Plus |
| 3R | 32079331 | 3R | 29239267..29239335 | 727..659 | 195 | 85.5 | Minus |
| 3R | 32079331 | 3R | 29235792..29235945 | 2438..2285 | 185 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:37 has no hits.
BO09817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:46 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 1..2784 | 17..2801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:30 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..2846 | 12..2804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:54 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 59..2839 | 17..2799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:46 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 53..2846 | 12..2804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:35 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31445-RA | 59..2839 | 17..2799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:35 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29240772..29240999 | 2572..2799 | 99 | <- | Minus |
| 3R | 29241055..29241575 | 2051..2571 | 100 | <- | Minus |
| 3R | 29241634..29242183 | 1501..2050 | 100 | <- | Minus |
| 3R | 29242237..29243094 | 643..1500 | 100 | <- | Minus |
| 3R | 29243158..29243313 | 487..642 | 100 | <- | Minus |
| 3R | 29243373..29243842 | 17..486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:54 Download gff for
BO09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25066494..25066721 | 2572..2799 | 99 | <- | Minus |
| arm_3R | 25066777..25067297 | 2051..2571 | 100 | <- | Minus |
| arm_3R | 25067356..25067905 | 1501..2050 | 100 | <- | Minus |
| arm_3R | 25067959..25068816 | 643..1500 | 100 | <- | Minus |
| arm_3R | 25068880..25069035 | 487..642 | 100 | <- | Minus |
| arm_3R | 25069095..25069564 | 17..486 | 100 | | Minus |
BO09817.pep Sequence
Translation from 16 to 2815
> BO09817.pep
MKWFLLFVLAIGLDLSVANSISRYNHYRLPTALRPQRYYLRILTLLESPD
DLRFAGNVQIVIKALQNTRNITLHSKNLTIDESRITLRQISGAGNMDNCV
SSTSVNPTHDYYIFHTCKELLAGNVYKLFLPFSADLTPQLFGYYRSSYKD
PVTNKTRWLSATQFEPSSARKAFPCFDEPGFKASFVVTLGYHKQFNALSN
MPVREIRPHESLANYIWCEFQESVPMSTYLVAYSVNDFSFKPSTLPNGAL
FRTWARPNAIDQCDYAAEFGPKVLQYYEEFFGIRYPLPKIDQMAVPDFSA
GAMENWGLVKYRESTLLYSPTHSSLADKQDLANVIAHELAHQWFGNLVTM
KWWTDLWLNEGFATYVAGLGVQEIYPEWHSRDKGSLTALMTAFRLDSLVS
SHPISRPIQMVTEIEESFDAISYQKGSAVLRMMHLFMGEESFRTGLREYL
KLYAYKNAEQNNLWESLTTAAHQNGALPGHYDINTIMDSWTLQTGFPVLN
ITRDYSTGTAEITQERYLRNSQIPQADRVGCWWVPLSYTTQDENDFNNTS
PKAWMECSSTDEGVPTTIDHSAGPEEWLILNIQLSTPYKANYDARNWKLL
IDTLNSKDFQSIHVINRAQLIDDVLYFAWTGEQDYETALQVTNYLRRERD
LIPWKSALDNLKLLNRILRQTPNFGSFKRYMQKLLTPIYEHLHGMNDTFS
LMTQQDEVLLKTTVVNVACQYDVSDCVTQAQAYFRRWRAETNPDENHPVP
LNLRSTVYCTAISQGTEEDWNFLWSRYRKSNVASERQTILSTLGCSKEVW
ILQRYMEKSFHPKSAIRKQDSSLCFQAVASREVGFLLAKQYFIENVELIH
KYYYPQTRVMSRLLTPLSEQVSTINDLNKFRSFANDSRHFLKGIRQAMQQ
SLETMLTNVQWMDWNYHKFSRTIRHHLASFLDH
BO09817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31445-PB | 927 | CG31445-PB | 1..927 | 1..927 | 4939 | 100 | Plus |
| CG31445-PA | 927 | CG31445-PA | 1..927 | 1..927 | 4939 | 100 | Plus |
| SP1029-PE | 932 | CG11956-PE | 1..932 | 1..927 | 3648 | 70.8 | Plus |
| SP1029-PD | 932 | CG11956-PD | 1..932 | 1..927 | 3648 | 70.8 | Plus |
| SP1029-PA | 932 | CG11956-PA | 1..932 | 1..927 | 3648 | 70.8 | Plus |
