Clone BO09820 Report

Search the DGRC for BO09820

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG5888-RA
Protein status:BO09820.pep: validated full length
Sequenced Size:1399

Clone Sequence Records

BO09820.3prime Sequence

981 bp (860 high quality bases) assembled on 2006-04-19

> BO09820.3prime
ATGGTCTAGAAAGCTTGCGGGCTGCTCTTCCTCAACGGGATATTCCTTGG
CCTTTTTCCAGGAGTGCGTTGGCATCGCCTTCAGCTGATTTTCGTACGCC
TTCTTGGCTAGCACATCCTTGGCCTTCGGATTTGGCTTATTGCAGTTCTC
CGAGTCGGCAAAGTGGTCCAGATACTCATCTCGCTTGCAGTAGATGCACA
CCCCGTAGATATACTCCTCCTCGCAGATTGTTGCATTCGTGGATCGAGCC
CAGTCGGCATTTTTCGCCGCCTTAAAGAGTTTGCCCACGTAGATATGGGC
AGTTGGGATGGGAGTAAAGGCATTCAGGGCAATGGTGGTTATCGGATTGT
GCTCCAAGTTCAGCACCTGTAGGTTCTTTAACTTGTCAAAAAGGCCGCTC
TGAATGCGATCCAAATTATTGAACGCCAAGTGAATCTCTAAAATCAAGGG
AGTGTTCCTGAAAAGCTGATCGGGCAGCCTGGCAATATTGTTTCTTTCCA
ATCTTAAGGTGAGCAGTTTCTTTTGCACCTTAAGGAAGTCCTTGCTCAAA
TAGCTGATGTTGCTCCTTATTCCAATGTATGCCAATTGCTCCGACATCCA
GAACAACTCGGTTGGCACATTATCACCGCAATTGAAGAGCTCGATCGACT
GAAGTTCGGTCATGTGCCAGAGTTCTTGGGGTCCAAAAGCGGACATTTCG
ACACTACTGTTCTTGGCATCGCAGTCGATCATCAGATGTTTTAGCTTCGA
TTGCTTTGCAAATATTGCACCCGACACCTTGCCCAAATTCTTGACCACAA
TTTCCAAATGGGTTAGATTTTTCAAAGGATGCAAAATGTTACCGGGCAAA
TCACTGCTTCCCTTTTAGGAGAGTTGTTGTAGTGCCGGCAGGTTTTTCAG
AAATTTTCAGGCAGTGTTGACTTGATCCAATGATGGATACTTTCTTCAGA
CTCTCGTGATCCGTGTAGTGTTGCTGGCAGA

BO09820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PA 1368 CG5888-RA 488..1365 896..19 4365 99.8 Minus
CG5888-PA 1368 CG5888-RA 406..457 976..925 260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 439..1398 976..19 4705 99.5 Minus
CG5888-RA 1881 CG5888-RA 593..1552 976..19 4705 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405519 398..976 2760 99.1 Plus
2L 23513712 2L 16404486..16404843 42..399 1790 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:34:24 has no hits.

BO09820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:00 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 403..1368 15..980 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:38 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 403..1368 15..980 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:44 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 590..1558 12..980 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:45 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 590..1558 12..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:45 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16400498..16400526 12..41 93 <- Plus
2L 16404486..16404841 42..397 100 <- Plus
2L 16404939..16405522 398..980 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:44 Download gff for BO09820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16400498..16400526 12..41 93 <- Plus
arm_2L 16404486..16404841 42..397 100 <- Plus
arm_2L 16404939..16405522 398..980 98   Plus

BO09820.5prime Sequence

873 bp (825 high quality bases) assembled on 2006-04-19

> BO09820.5prime
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGT

BO09820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PA 1368 CG5888-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 34..890 17..873 4285 100 Plus
CG5888-RA 1881 CG5888-RA 188..1044 17..873 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16405068..16405924 873..17 4285 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:26:16 has no hits.

BO09820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:01 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:40 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:34:37 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 183..1044 8..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:23 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 183..1044 8..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:23 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16405068..16405929 8..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:34:37 Download gff for BO09820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16405068..16405929 8..873 99   Minus

BO09820.complete Sequence

1399 bp (1399 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631585

> BO09820.complete
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGTGCAAAAGAAACTGCTCACCTTAAGATT
GGAAAGAAACAATATTGCCAGGCTGCCCGATCAGCTTTTCAGGAACACTC
CCTTGATTTTAGAGATTCACTTGGCGTTCAATAATTTGGATCGCATTCAG
AGCGGCCTTTTTGACAAGTTAAAGAACCTACAGGTGCTGAACTTGGAGCA
CAATCCGATAACCACCATTGCCCTGAATGCCTTTACTCCCATCCCAACTG
CCCATATCTACGTGGGCAAACTCTTTAAGGCGGCGAAAAATGCCGACTGG
GCTCGATCCACGAATGCAACAATCTGCGAGGAGGAGTATATCTACGGGGT
GTGCATCTACTGCAAGCGAGATGAGTATCTGGACCACTTTGCCGACTCGG
AGAACTGCAATAAGCCAAATCCGAAGGCCAAGGATGTGCTAGCCAAGAAG
GCGTACGAAAATCAGCTGAAGGCGATGCCAACGCACTCCTGGAAAAAGGC
CAAGGAATATCCCGTTGAGGAAGAGCAGCCCGCAAGCTTTCTAGACCAT

BO09820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1368 CG5888-PB 1..1365 17..1381 6825 100 Plus
CG5888-RA 1368 CG5888-PA 1..1365 17..1381 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 34..1398 17..1381 6825 100 Plus
CG5888-RA 1881 CG5888-RA 188..1552 17..1381 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405924 1002..17 4930 100 Minus
2L 23513712 2L 16404486..16404843 1358..1001 1790 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:41:40 has no hits.

BO09820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:28 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 17..1385 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:22 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 179..1554 8..1388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:47 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 188..1552 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:29 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 179..1554 8..1388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:05 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 188..1552 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:05 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400502..16400526 1359..1383 92 <- Minus
2L 16404486..16404841 1003..1358 100 <- Minus
2L 16404939..16405924 17..1002 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:47 Download gff for BO09820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16400502..16400526 1359..1383 92 <- Minus
arm_2L 16404486..16404841 1003..1358 100 <- Minus
arm_2L 16404939..16405924 17..1002 100   Minus

BO09820.pep Sequence

Translation from 16 to 1399

> BO09820.pep
MWWLLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIK
CENLQLHSDNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQNCAIPNA
ESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSI
IGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNL
GKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELF
NCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERNNI
ARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITT
IALNAFTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVCIYCK
RDEYLDHFADSENCNKPNPKAKDVLAKKAYENQLKAMPTHSWKKAKEYPV
EEEQPASFLDH

BO09820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PB 455 CG5888-PB 1..455 1..455 2396 100 Plus
CG5888-PA 455 CG5888-PA 1..455 1..455 2396 100 Plus
Tl-PD 1097 CG5490-PD 42..434 41..356 184 23.1 Plus
Tl-PB 1097 CG5490-PB 42..434 41..356 184 23.1 Plus
Tl-PC 1117 CG5490-PC 42..434 41..356 184 23.1 Plus