Clone Sequence Records
BO09822.3prime Sequence
871 bp (785 high quality bases) assembled on 2006-04-19
> BO09822.3prime
ATGGTCTAGAAAGCTTGCGTCCTCCTTCTCCTCTTTGGCGGACATGAAGA
GCTTCTGGCAAGTGAAGGTCACCGAGTCAATCGTGCTCTGCACCCATTTC
GGCTTATTCTTCCACACGACGCCCACGTAGTAGAAAGGTATGCCAATTAT
GGTGATTAATACCCCCATTCCGACCTCATAGGGCGCCACATAGATGGGCA
CGACAACTAAGAATGCGCACACGATGACGAATAGGGCGGGAATCCACATG
GCGACTTTAATTGGCCGCTCCATGCAGGGACGGGTGTAGCGGAAATATAG
AACCGCCGACACCGACAACATTATAAAGAACGATTCCACAATGCTGGCGT
AGGTGATCAGCACATACACATCGCTCACCACCAGCATCACAATGGAGAGA
AAGCACAGAAAAACGAGCGACGGCAGTGGGGTGTAGCTCTTTACGCTGAT
GTGCGACAGAATCGCCGGCATGTGTCCATTGCGGGCACCCACGAAGCAGA
TGCGGGAGGAGGTCATGATGTGGACGGAAAGGCCGCCAAAAGCAGATATG
GCCACCATGAGGGGTATGATCAGTGAAAACACGCCGAGAATCTTATCGCC
AAAGGTCACAGCGATGGCATTGGATGCGATCATCTCCGAGGGCGACAGCA
CGGCCAGATAAGCCACATTGGCCAGCACATAAATGCCGGTGACCAGAGGT
AGGGAGATGTAAATGGCGCGCGGCAGGTTGCGATATGGATCGCGGAGCTC
CTCCGTCATGAAGTTCAAGTAATTCCATCCGGCATAGGAAAAGATACCGG
AGTAAAAGGCTACCGACATCTTGCCGGGATCAGTCTCAGTGTTATCAAAG
GGTCTCGTGAAGTTCTCCACG
BO09822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6070-PA | 1554 | CG6070-RA | 699..1551 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 805..1657 | 871..19 | 4265 | 100 | Minus |
| gb-RA | 2635 | CG6070-RA | 1250..2102 | 871..19 | 4265 | 100 | Minus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 810..649 | 255 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110134..27110398 | 607..871 | 1325 | 100 | Plus |
| 3R | 32079331 | 3R | 27109682..27109883 | 406..607 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 27109127..27109304 | 78..255 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 27109449..27109601 | 254..406 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 27109000..27109059 | 19..78 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:37:24 has no hits.
BO09822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:04 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 699..1554 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:44 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 699..1554 | 15..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:16:24 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1250..2108 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:19 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1250..2108 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:19 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27109451..27109600 | 256..405 | 100 | <- | Plus |
| 3R | 27109682..27109882 | 406..606 | 100 | <- | Plus |
| 3R | 27110134..27110398 | 607..871 | 100 | | Plus |
| 3R | 27108994..27109058 | 12..77 | 95 | <- | Plus |
| 3R | 27109127..27109304 | 78..255 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:16:24 Download gff for
BO09822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22934716..22934780 | 12..77 | 95 | <- | Plus |
| arm_3R | 22934849..22935026 | 78..255 | 100 | <- | Plus |
| arm_3R | 22935173..22935322 | 256..405 | 100 | <- | Plus |
| arm_3R | 22935404..22935604 | 406..606 | 100 | <- | Plus |
| arm_3R | 22935856..22936120 | 607..871 | 100 | | Plus |
BO09822.5prime Sequence
950 bp (869 high quality bases) assembled on 2006-04-19
> BO09822.5prime
GAAGTTATCAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCA
GCGAAATGGTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATT
GCCCAACCAGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATC
CGCCGAGTCAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCC
TCGAAGGAGTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTT
GTTTCTCCGAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCT
GGTCATCTGGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCT
ACGCGGAACTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTAT
ATCTTCGAGGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGC
CATGATGATATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTG
CCTCCTACGTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAA
ATAGCGTTACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCT
GAATTCGTACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGT
TCACCAAGATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGG
ATGATGATGGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGA
GACTGATCCCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCT
ATGCCGGATGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCA
TATCGCAACCTGCCGCGCGCCATTTACATCTCCCTACCTCTGGTCACCGG
CATTTATGTGCTGGCCAATGTGGCTTATCTGGCCGTGCTGTCGCCCTCGG
BO09822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6070-PA | 1554 | CG6070-RA | 1..934 | 17..950 | 4670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1040 | 16..950 | 4675 | 100 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..1485 | 16..950 | 4675 | 100 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 776..937 | 255 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110163..27110647 | 950..466 | 2425 | 100 | Minus |
| 3R | 32079331 | 3R | 27111271..27111720 | 465..16 | 2250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:30 has no hits.
BO09822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:05 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:46 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:52 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 542..1485 | 6..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:20 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 542..1485 | 6..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:20 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27110163..27110647 | 466..950 | 100 | <- | Minus |
| 3R | 27111271..27111729 | 6..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:52 Download gff for
BO09822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22935885..22936369 | 466..950 | 100 | <- | Minus |
| arm_3R | 22936993..22937451 | 6..465 | 99 | | Minus |
BO09822.complete Sequence
1585 bp (1585 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631586
> BO09822.complete
GAAGTTATCAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCA
GCGAAATGGTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATT
GCCCAACCAGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATC
CGCCGAGTCAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCC
TCGAAGGAGTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTT
GTTTCTCCGAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCT
GGTCATCTGGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCT
ACGCGGAACTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTAT
ATCTTCGAGGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGC
CATGATGATATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTG
CCTCCTACGTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAA
ATAGCGTTACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCT
GAATTCGTACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGT
TCACCAAGATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGG
ATGATGATGGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGA
GACTGATCCCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCT
ATGCCGGATGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCA
TATCGCAACCTGCCGCGCGCCATTTACATCTCCCTACCTCTGGTCACCGG
CATTTATGTGCTGGCCAATGTGGCTTATCTGGCCGTGCTGTCGCCCTCGG
AGATGATCGCATCCAATGCCATCGCTGTGACCTTTGGCGATAAGATTCTC
GGCGTGTTTTCACTGATCATACCCCTCATGGTGGCCATATCTGCTTTTGG
CGGCCTTTCCGTCCACATCATGACCTCCTCCCGCATCTGCTTCGTGGGTG
CCCGCAATGGACACATGCCGGCGATTCTGTCGCACATCAGCGTAAAGAGC
TACACCCCACTGCCGTCGCTCGTTTTTCTGTGCTTTCTCTCCATTGTGAT
GCTGGTGGTGAGCGATGTGTATGTGCTGATCACCTACGCCAGCATTGTGG
AATCGTTCTTTATAATGTTGTCGGTGTCGGCGGTTCTATATTTCCGCTAC
ACCCGTCCCTGCATGGAGCGGCCAATTAAAGTCGCCATGTGGATTCCCGC
CCTATTCGTCATCGTGTGCGCATTCTTAGTTGTCGTGCCCATCTATGTGG
CGCCCTATGAGGTCGGAATGGGGGTATTAATCACCATAATTGGCATACCT
TTCTACTACGTGGGCGTCGTGTGGAAGAATAAGCCGAAATGGGTGCAGAG
CACGATTGACTCGGTGACCTTCACTTGCCAGAAGCTCTTCATGTCCGCCA
AAGAGGAGAAGGAGGACGCAAGCTTTCTAGACCAT
BO09822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 1554 | CG6070-PB | 1..1551 | 17..1567 | 7755 | 100 | Plus |
| gb-RA | 1554 | CG6070-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
| JhI-21-RC | 1503 | CG12317-PC | 700..861 | 776..937 | 255 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1657 | 16..1567 | 7760 | 100 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..2102 | 16..1567 | 7760 | 100 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 776..937 | 255 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110134..27110647 | 979..466 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 27111271..27111720 | 465..16 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27109682..27109883 | 1180..979 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 27109127..27109304 | 1508..1331 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 27109449..27109601 | 1332..1180 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 27109000..27109059 | 1567..1508 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:47:22 has no hits.
BO09822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:19 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1..1554 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:11 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 527..2093 | 6..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:30 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 552..2102 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:19 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 527..2093 | 6..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:26 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 552..2102 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:26 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27109682..27109882 | 980..1180 | 100 | <- | Minus |
| 3R | 27111271..27111719 | 17..465 | 100 | | Minus |
| 3R | 27108998..27109058 | 1509..1569 | 96 | <- | Minus |
| 3R | 27109127..27109304 | 1331..1508 | 100 | <- | Minus |
| 3R | 27109451..27109600 | 1181..1330 | 100 | <- | Minus |
| 3R | 27110134..27110647 | 466..979 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:30 Download gff for
BO09822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22934849..22935026 | 1331..1508 | 100 | <- | Minus |
| arm_3R | 22935173..22935322 | 1181..1330 | 100 | <- | Minus |
| arm_3R | 22935404..22935604 | 980..1180 | 100 | <- | Minus |
| arm_3R | 22934720..22934780 | 1509..1569 | 96 | <- | Minus |
| arm_3R | 22935856..22936369 | 466..979 | 100 | <- | Minus |
| arm_3R | 22936993..22937441 | 17..465 | 100 | | Minus |
BO09822.pep Sequence
Translation from 16 to 1585
> BO09822.pep
MPAADELQSPSSEMVLLTPSSGNPPSSIAQPAANPAEKAQCREGSAESDS
SRVVIKKQLGLLEGVAIILGIIFGSGIFVSPKGVIREVESVGASLVIWVL
CGLLSMIGALCYAELGTAIPKSGGDYAYIFEAYGSLPAFLYLWDAMMIFV
PTTNAIMGLTFASYVLEPFFGGACEIPKIALQLLAAITICFLTYLNSYYM
KVTTKMQNVIMFTKIAALVLIILVGLVWMMMGNVENFTRPFDNTETDPGK
MSVAFYSGIFSYAGWNYLNFMTEELRDPYRNLPRAIYISLPLVTGIYVLA
NVAYLAVLSPSEMIASNAIAVTFGDKILGVFSLIIPLMVAISAFGGLSVH
IMTSSRICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIVMLVVSD
VYVLITYASIVESFFIMLSVSAVLYFRYTRPCMERPIKVAMWIPALFVIV
CAFLVVVPIYVAPYEVGMGVLITIIGIPFYYVGVVWKNKPKWVQSTIDSV
TFTCQKLFMSAKEEKEDASFLDH
BO09822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-PB | 517 | CG6070-PB | 1..517 | 1..517 | 2632 | 100 | Plus |
| gb-PA | 517 | CG6070-PA | 1..517 | 1..517 | 2632 | 100 | Plus |
| mnd-PD | 499 | CG3297-PD | 20..497 | 35..516 | 1334 | 53.6 | Plus |
| mnd-PA | 499 | CG3297-PA | 20..497 | 35..516 | 1334 | 53.6 | Plus |
| mnd-PC | 499 | CG3297-PC | 20..497 | 35..516 | 1334 | 53.6 | Plus |
