Clone Sequence Records
BO09825.3prime Sequence
986 bp (795 high quality bases) assembled on 2006-04-19
> BO09825.3prime
ATGGTCTAGAAAGCTTGCGTTGTGCTTGCGATTGCGTTTGCTGTAGGCTG
ATCTCACAAAGTGGTGACGGCTTGGACGGCGTCTCCTTCGCTGAACTGAA
ACGTTGTAGTCGTCGTCGTCGACCAGATGTTCAGGTGACCCGCTGTTCTG
CGAGCCTTTGTATTCCGCGTCTAGGCATTTTTCGATGTCGTCACATAGAG
TCCATCCATCGTCATCATCATCTGCAATGGTTTTATCTACACTGGTGTCA
CCGCTGTTGCCATTATTATTGTTCTGTATGGCCGGTATATTGTTAAAGGC
TGGATATGCCACATAATATGGATTGTACATCCAAGGAGGATTATACATGA
GGGGAGCTCCGTATCCCTGGAAACAACCGGCACACTGGGCGGGCAGACCA
TTTTGCAGAATGTATCCGTAGGGATAATTGAGGCAGTGCTCGCAGATAGA
GGTCTTAGGCCTCGTCGGCTGGGCAAAATCACTATTTTGGCCTGGATTCT
GTCCGCAATTGAAGTAGGGCCAACTGTTGCCAGTGTAATGACACCGTGTA
GCCTTGGGTGTCCTCCGCTGGAGGGTTCTCCTCCTCCGTGGCACATATTC
GATGGTTTCGTGACACCTGTCGGAGTCCTCGGCTTCACACTGCACCACTA
TTTTGGCCAACATCACTCTGGCCTGACACTTTTCGCCACAGATCCGCTGA
CGGCTTCTTTCTCTGCAGTCGCGTCCATCTTCATTCTTACACTCGCGATC
CAAACGCACCACATAACAGCACGATCCCTTGTCAGTGTAGCCCAGTCCAA
AACGTCCTCCCACCTTCGAGACATTCTGATTCACCTGGACATTGACCTCA
TTGCGATTTTGGATTTGATGTTCGATTATATTGTTGATATCGTTGGTCAG
CCGAATAATGTTGGTCGTATTAATAGGTACCTGGGGTGGTGCCACTATAT
TCGTATCGTTAATGCCCTGAACCATCAGGGGCTTGA
BO09825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-PA | 1215 | CG3987-RA | 245..1212 | 986..19 | 4840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-RA | 1483 | CG3987-RA | 334..1301 | 986..19 | 4840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15140566..15141533 | 986..19 | 4840 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4442..4484 | 250..292 | 116 | 74.4 | Plus |
BO09825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:10 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-PA | 246..1215 | 16..985 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:52 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-PA | 246..1215 | 16..985 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:47 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 335..1301 | 19..985 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:39:55 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 335..1301 | 19..985 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:39:55 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15140567..15141533 | 19..985 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:47 Download gff for
BO09825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10966289..10967255 | 19..985 | 100 | | Minus |
BO09825.5prime Sequence
814 bp (813 high quality bases) assembled on 2006-04-19
> BO09825.5prime
GAAGTTATCAGTCGACATGGCACATTCTATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGC
BO09825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-PA | 1215 | CG3987-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-RA | 1483 | CG3987-RA | 90..887 | 17..814 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15140336..15141119 | 31..814 | 3920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:45:09 has no hits.
BO09825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:13 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:29:54 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:55:20 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 81..887 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:31:34 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 81..887 | 9..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:31:34 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15140336..15141119 | 31..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:55:20 Download gff for
BO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10966058..10966841 | 31..814 | 100 | | Plus |
BO09825.complete Sequence
1246 bp assembled on 2008-08-15
GenBank Submission: FJ631587
> BO09825.complete
GAAGTTATCAGTCGACATGGCACATTCTATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGCCTCAATTATCCCTACGGATACATTCTGCAAAATGGT
CTGCCCGCCCAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCCCTCAT
GTATAATCCTCCTTGGATGTACAATCCATATTATGTGGCATATCCAGCCT
TTAACAATATACCGGCCATACAGAACAATAATAATGGCAACAGCGGTGAC
ACCAGTGTAGATAAAACCATTGCAGATGATGATGACGATGGATGGACTCT
ATGTGACGACATCGAAAAATGCCTAGACGCGGAATACAAAGGCTCGCAGA
ACAGCGGGTCACCTGAACATCTGGTCGACGACGACGACTACAACGTTTCA
GTTCAGCGAAGGAGACGCCGTCCAAGCCGTCACCACTTTGTGAGATCAGC
CTACAGCAAACGCAATCGCAAGCACAACGCAAGCTTTCTAGACCAT
BO09825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-RA | 1215 | CG3987-PA | 1..1212 | 17..1228 | 6045 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-RA | 1483 | CG3987-RA | 90..1301 | 17..1228 | 6045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15140336..15141533 | 31..1228 | 5990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4442..4484 | 997..955 | 116 | 74.4 | Minus |
BO09825.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:38 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 54..1274 | 9..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:46 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 90..1301 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:19 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 63..1274 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:59 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3987-RA | 90..1301 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:59 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15140336..15141533 | 31..1230 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:46 Download gff for
BO09825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10966058..10967255 | 31..1230 | 99 | | Plus |
BO09825.pep Sequence
Translation from 16 to 1246
> BO09825.pep
MAHSMLKLGMMCGILHLLTFGVIAEDQLKNNTIVVHTPLQNYDQPNLQDY
EECQVNRDNCINVCAGKQSCEDECPVCPDLYVKPLMVQGINDTNIVAPPQ
VPINTTNIIRLTNDINNIIEHQIQNRNEVNVQVNQNVSKVGGRFGLGYTD
KGSCCYVVRLDRECKNEDGRDCRERSRQRICGEKCQARVMLAKIVVQCEA
EDSDRCHETIEYVPRRRRTLQRRTPKATRCHYTGNSWPYFNCGQNPGQNS
DFAQPTRPKTSICEHCLNYPYGYILQNGLPAQCAGCFQGYGAPLMYNPPW
MYNPYYVAYPAFNNIPAIQNNNNGNSGDTSVDKTIADDDDDGWTLCDDIE
KCLDAEYKGSQNSGSPEHLVDDDDYNVSVQRRRRRPSRHHFVRSAYSKRN
RKHNASFLDH
BO09825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3987-PA | 404 | CG3987-PA | 1..404 | 1..404 | 2244 | 100 | Plus |
