Clone Sequence Records
BO09831.3prime Sequence
922 bp (883 high quality bases) assembled on 2006-04-19
> BO09831.3prime
ATGGTCTAGAAAGCTTGCAATCTGGCCGGGATCTTGCTGAAGCGGCTGCT
GCTGCTCTCCTTCCTCCTCTCCCTCCTCACCGTAGCAGCGCCGCTTAAAA
TCGCCAAAGAGATCTGCACGCGGCTGCAGACCTTGTTGAAGATGATCCAT
GCTCACCGTCTGCGTAGTGTTCCCGGTTTTGGTGAGCACTGTACATCCGT
GCTCTACCACCATGGTAAGTGAATAGAGCGTGGCCAGATTACTCATGCTA
TCGGTCTCATAAAGCTCTATATCCGGCAAACGGATCTGTGTCTGTTGCGA
ATCCTGCAAAAATCGGGCGATGCGCTCATTGACGCTCATCTTGATGCTGA
ATCCTGGACGCTCGCCATTGATGCGGCGACACCCTGCTCGTATCTCACGT
ACTTCCTGTCCCTGGGCGTGTCCAGGAGGCGACGAGGAAAGAAACGGATT
AGAGGTTTCGCCGGACATCTCACTCTCGATTTGGCGGGAAGCCGGCATGG
TGCCATCTGCATTTGTTTCCATCTCTGAGCAGGCATTCTGAATCTCGATA
GGCTCGGAGACGCCGGCTGGTTGGAAGCGGGAAAGATCCTGAAGAGATTC
TGGAAGTTGGACTGGAGACTTCGAAGGCGGTTCCATACCCACCGCTCCCG
CTTCGGTGCCAGACATAAGAGTGTCATCTTCTCCAATTGTGTCATCCGAG
CGAATTTGAGGCAGTAGTGATTTTTTTGTAAGCTTCCTTTTTGGATCGTA
TCTGGCTCCGGGTCCGAATTCGTTTCCCGGCCAGTCGGTGAGTTCATCGT
CGCCCTCGCGATCGGTGTCGTGCCGTCGATGACCACCTACTTCCGCCTCG
CTATCGGTGGACGAGCTCAGGGAACTAGAGCTTAAGAAGTCATAAAAGTC
GCTACAATCCATTGACTGAGCT
BO09831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 2091 | CG4281-RA | 1185..2088 | 922..19 | 4470 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 1336..2239 | 922..19 | 4490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2062946..2063696 | 172..922 | 3725 | 99.7 | Plus |
| X | 23542271 | X | 2062738..2062892 | 19..173 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:37:54 has no hits.
BO09831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:20 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1185..2091 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:02 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1185..2091 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:48 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1336..2243 | 13..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:29 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1336..2243 | 13..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:29 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2062734..2062891 | 13..172 | 98 | <- | Plus |
| X | 2062947..2063696 | 173..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:48 Download gff for
BO09831.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1956767..1956924 | 13..172 | 98 | <- | Plus |
| arm_X | 1956980..1957729 | 173..922 | 99 | | Plus |
BO09831.5prime Sequence
913 bp (858 high quality bases) assembled on 2006-04-19
> BO09831.5prime
GAAGTTATCAGTCGACATGGATCAATTCTCGCACGATCTGACGTTGGCTC
TGGACCTGACGCTGATGGACAGGGCTAGTGGCGGCGTCGGTAGGTGGGGC
TCCCGCCGCAGGACACGTTCCACGGGCAATCTGCCCTGCGCCCCTCAGCC
CACGGAGGACTCCTCGAGCAGTCCCACGGATGCGCTAAACCAGGGGCACC
ATCACGGGCATCATGGCCACCACCACCATCACCACCACACAAGTGCCAAC
GTGGACGGACTGGACACACACAACCTTAAGTTGCCAGCCAGCGACTCTGA
CGAAAAGGCGGAGGCGATGCTGCCTCTGCGTCTGCCACTGACCTTGCCTA
TACGCATGGGTGCCCTGGAGTCCGACTCGCTTAACGAGACCACCTTCAGT
CCAGCCAGATTCTACAAGCCCAACTCGCGAAGGAAACGCAAGATCAAACG
GATGTCCATGGAGTTCGAGTTCAGCAAGGATACATCACACACCTTCACCG
AATCGCCACTGCAGCCCAGCCTGCTAAGTAGCAGCGGTTCTGCTACTGGA
ACCATACGCAAGCGATTGTTGAAAATTGACGCCACTGGACATCGCTCGCA
TTTGTTCTTCTGCGGCAAACGCAAGCGCTCAAACCGTGATCGCTACCATG
AGCAGGATTCGGTTAAGCTGTACGCCTTGCCACACTCACAAGTAGATGAC
CAGCACGTAGAGCAACCACAGCACCAGCAGCAGAGGATGCGCCCCCGCAG
CTACTCCTCCACATCGAAGCCACTCAGTGACCGCCTGCTTCCACTGAACA
AGGGACTGCTGTCGAAGATCAACCGAATGGCTGCCCAGGGACAGCAGACT
AAGCACACCCAAAAGACTGAGACAAAGGACAAGGACTTTGAATGTCATCG
TTCTGAAGGACCC
BO09831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 2091 | CG4281-RA | 1..897 | 17..913 | 4435 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 151..1048 | 16..913 | 4460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2063984..2064491 | 913..406 | 2510 | 99.6 | Minus |
| X | 23542271 | X | 2064547..2064820 | 408..135 | 1370 | 100 | Minus |
| X | 23542271 | X | 2064874..2064992 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:14 has no hits.
BO09831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:21 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:04 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:42 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1048 | 16..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:20 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1048 | 16..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:20 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2063984..2064488 | 409..913 | 99 | <- | Minus |
| X | 2064547..2064820 | 135..408 | 100 | <- | Minus |
| X | 2064874..2064992 | 16..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:42 Download gff for
BO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1958017..1958521 | 409..913 | 99 | <- | Minus |
| arm_X | 1958580..1958853 | 135..408 | 100 | <- | Minus |
| arm_X | 1958907..1959025 | 16..134 | 100 | | Minus |
BO09831.complete Sequence
2122 bp (2122 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631589
> BO09831.complete
GAAGTTATCAGTCGACATGGATCAATTCTCGCACGATCTGACGTTGGCTC
TGGACCTGACGCTGATGGACAGGGCTAGTGGCGGCGTCGGTAGGTGGGGC
TCCCGCCGCAGGACACGTTCCACGGGCAATCTGCCCTGCGCCCCTCAGCC
CACGGAGGACTCCTCGAGCAGTCCCACGGATGCGCTAAACCAGGGGCACC
ATCACGGGCATCATGGCCACCACCACCATCACCACCACACAAGTGCCAAC
GTGGACGGACTGGACACACACAACCTTAAGTTGCCAGCCAGCGACTCTGA
CGAAAAGGCGGAGGCGATGCTGCCTCTGCGTCTGCCACTGACCTTGCCTA
TACGCATGGGTGCCCTGGAGTCCGACTCGCTTAACGAGACCACCTTCAGT
CCAGCCAGATTCTACAAGCCCAACTCGCGAAGGAAACGCAAGATCAAACG
GATGTCCATGGAGTTCGAGTTCAGCAAGGATACATCACACACCTTCACCG
AATCGCCACTGCAGCCCAGCCTGCTAAGTAGCAGCGGTTCTGCTACTGGA
ACCATACGCAAGCGATTGTTGAAAATTGACGCCACTGGACATCGCTCGCA
TTTGTTCTTCTGCGGCAAACGCAAGCGCTCAAACCGTGATCGCTACCATG
AGCAGGATTCGGTTAAGCTGTACGCCTTGCCACACTCACAAGTAGATGAC
CAGCACGTAGAGCAACCACAGCACCAGCAGCAGAGGATGCGCCCCCGCAG
CTACTCCTCCACATCGAAGCCACTCAGTGACCGCCTGCTTCCACTGAACA
AGGGACTGCTGTCGAAGATCAACCGAATGGCTGCCCAGGGACAGCAGACT
AAGCACACCCAAAAGACTGAGACAAAGGACAAGGACTTGAAATGTCATCG
TTCTGAAGGACCCGAAGGAGTGAGCCTGGAGATGGAGGAGCTGCCCGATC
AAAAGGACGCGGTCCAGAAGCTACCTTTGCCAAGTGCTGATTTTACGACC
GCCAATTTTAACTCCATCAGCATGGACACCATTGTGCCTGTGACCGATAT
TGATGCCTTGTTATTGAGTACGCCACCAGCTGCTCCGCTGCTGCGCAAAA
AGGCGCAGGGGCAGGCGCCGGGACACAGCAGCAGTAGCTCATCCAAAACG
GAACGTCGCCGCCGCTTCCAAACGTTTCCACAGCCTCAGCTGCAGCTCCA
AGCTCAGTCAATGGATTGTAGCGAACTTTATGACTTCTTAAGCTCTAGTT
CCCTGAGCTCGTCCACCGATAGCGAGGCGGAAGTAGGTGGTCATCGACGG
CACGACACCGATCGCGAGGGCGACGATGAACTCACCGACTGGCCGGGAAA
CGAATTCGGACCCGGAGCCAGATACGATCCAAAAAGGAAGCTTACAAAAA
AATCACTACTGCCTCAAATTCGCTCGGATGACACAATTGGAGAAGATGAC
ACTCTTATGTCTGGCACCGAAGCGGGAGCGGTGGGTATGGAACCGCCTTC
GAAGTCTCCAGTCCAACTTCCAGAATCTCTTCAGGATCTTTCCCGCTTCC
AACCAGCCGGCGTCTCCGAGCCTATCGAGATTCAGAATGCCTGCTCAGAG
ATGGAAACAAATGCAGATGGCACCATGCCGGCTTCCCGCCAAATCGAGAG
TGAGATGTCCGGCGAAACCTCTAATCCGTTTCTTTCCTCGTCGCCTCCTG
GACACGCCCAGGGACAGGAAGTACGTGAGATACGAGCAGGGTGTCGCCGC
ATCAATGGCGAGCGTCCAGGATTCAGCATCAAGATGAGCGTCAATGAGCG
CATCGCCCGATTTTTGCAGGATTCGCAACAGACACAGATCCGTTTGCCGG
ATATAGAGCTTTATGAGACCGATAGCATGAGTAATCTGGCCACGCTCTAT
TCACTTACCATGGTGGTAGAGCACGGATGTACAGTGCTCACCAAAACCGG
GAACACTACGCAGACGGTGAGCATGGATCATCTTCAACAAGGTCTGCAGC
CGCGTGCAGATCTCTTTGGCGATTTTAAGCGGCGCTGCTACGGTGAGGAG
GGAGAGGAGGAAGGAGAGCAGCAGCAGCCGCTTCAGCAAGATCCCGGCCA
GATTGCAAGCTTTCTAGACCAT
BO09831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2091 | CG4281-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 151..2239 | 16..2104 | 10445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2062946..2064491 | 1951..406 | 7730 | 100 | Minus |
| X | 23542271 | X | 2064547..2064820 | 408..135 | 1370 | 100 | Minus |
| X | 23542271 | X | 2062738..2062892 | 2104..1950 | 775 | 100 | Minus |
| X | 23542271 | X | 2064874..2064992 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:48 has no hits.
BO09831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:52 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1..2091 | 17..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:36 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 145..2237 | 16..2110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:05 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 152..2239 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:53 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 145..2237 | 16..2110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:08 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 152..2239 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:08 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2062734..2062891 | 1951..2106 | 98 | <- | Minus |
| X | 2062947..2064488 | 409..1950 | 100 | <- | Minus |
| X | 2064547..2064820 | 135..408 | 100 | <- | Minus |
| X | 2064874..2064991 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:05 Download gff for
BO09831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1956767..1956924 | 1951..2106 | 98 | <- | Minus |
| arm_X | 1956980..1958521 | 409..1950 | 100 | <- | Minus |
| arm_X | 1958580..1958853 | 135..408 | 100 | <- | Minus |
| arm_X | 1958907..1959024 | 17..134 | 100 | | Minus |
BO09831.pep Sequence
Translation from 16 to 2122
> BO09831.pep
MDQFSHDLTLALDLTLMDRASGGVGRWGSRRRTRSTGNLPCAPQPTEDSS
SSPTDALNQGHHHGHHGHHHHHHHTSANVDGLDTHNLKLPASDSDEKAEA
MLPLRLPLTLPIRMGALESDSLNETTFSPARFYKPNSRRKRKIKRMSMEF
EFSKDTSHTFTESPLQPSLLSSSGSATGTIRKRLLKIDATGHRSHLFFCG
KRKRSNRDRYHEQDSVKLYALPHSQVDDQHVEQPQHQQQRMRPRSYSSTS
KPLSDRLLPLNKGLLSKINRMAAQGQQTKHTQKTETKDKDLKCHRSEGPE
GVSLEMEELPDQKDAVQKLPLPSADFTTANFNSISMDTIVPVTDIDALLL
STPPAAPLLRKKAQGQAPGHSSSSSSKTERRRRFQTFPQPQLQLQAQSMD
CSELYDFLSSSSLSSSTDSEAEVGGHRRHDTDREGDDELTDWPGNEFGPG
ARYDPKRKLTKKSLLPQIRSDDTIGEDDTLMSGTEAGAVGMEPPSKSPVQ
LPESLQDLSRFQPAGVSEPIEIQNACSEMETNADGTMPASRQIESEMSGE
TSNPFLSSSPPGHAQGQEVREIRAGCRRINGERPGFSIKMSVNERIARFL
QDSQQTQIRLPDIELYETDSMSNLATLYSLTMVVEHGCTVLTKTGNTTQT
VSMDHLQQGLQPRADLFGDFKRRCYGEEGEEEGEQQQPLQQDPGQIASFL
DH
BO09831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 696 | CG4281-PA | 1..696 | 1..696 | 3635 | 100 | Plus |
