Clone Sequence Records
BO09836.3prime Sequence
942 bp (845 high quality bases) assembled on 2006-04-19
> BO09836.3prime
ATGGTCTAGAAAGCTTGCCAGGCTCTTCTCGAGCTTGATCAGCTCGGTGA
TGCCATCGTACATCTCCTTGACGGCCTCGAACTCGGTCAGACCCATGCGA
CGCTTGTTGGAGATGTCGTAGACACCACCCTCAGCCTCGGTGTGCTCACC
GCGGGTTCCGCGCACCTGCAGGTTGTACTTGGCGGCAACCTCCTCCAGCT
TGGCCTTGTTGGATGCCAGCTTGGGCACCTTGATGTGCACGGAGGCACGG
ATGGTGGTGCCCAGGTTGGTGGGGCAGAAGGTCAGGAAACCGAGACGGTC
GTCGTGGCTGAATGGCACACGCTTCTCGATTTCGTTGACGGCGGTCACCA
GACGCTTGTAGATCTGGCCCAGATCACCACCCTGCTGCATGGAGATGATG
CGGAGATGGTCCTCCTCGTTGCACCAGACCAGGAAGGTCTTGGCATCGTT
GTGGTAGATGCCACGGCCGCTGGGCCAGAAGCGGCAGGCGTTGGCGGCCT
GCAGGAAACGATCGCCCTCCTTGAACAGGAAGTGGTCGTCGATCAGCTGC
TGCTGGACGGCCTTCTCCATGCCAGTCAGGGGGTAGAACTTGCCCTTCAG
CTCACCTTCCAGACCGGACAGGGTGCTGCTGACCTTGCTTTCCATCTCCT
TGTACTGGGCCTCGGTCAAGCAGGGGTTGAAGGGGTATCCCTGCATGGAG
CGACCGCAACGCACGCGAGTGGAGATCACGTACTCGTTGGTGGGGTCAAC
GTTGCCGAAGGTGGACACATCGCCAAAGTTGGAGGCCGGGTGCTTGTCGG
TCTTCTTGAAGCCACCATGGTAGTCCTCGATGATGGGATCGAACAGGTCG
GCGAACACTGTGTAAGCCTCGGCATCGGGAGCGTAGATGCCGACGCCCGA
ATCGTGGGTCTCCAGGCCAGACTGGATCACATCCAGCAGGGT
BO09836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32031-PA | 1689 | Argk-RA | 763..1686 | 942..19 | 4570 | 99.7 | Minus |
| CG32031-PB | 1299 | Argk-RB | 373..1296 | 942..19 | 4570 | 99.7 | Minus |
| CG32031-PD | 1071 | Argk-RD | 145..1068 | 942..19 | 4570 | 99.7 | Minus |
| CG32031-PC | 1191 | Argk-RC | 265..1188 | 942..19 | 4570 | 99.7 | Minus |
| CG5144-PA | 1167 | CG5144-RA | 730..767 | 444..407 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-RG | 2110 | CG32031-RG | 788..1711 | 942..19 | 4590 | 99.8 | Minus |
| Argk-RH | 1576 | CG32031-RH | 155..1078 | 942..19 | 4590 | 99.8 | Minus |
| Argk-RE | 1854 | CG32031-RE | 532..1455 | 942..19 | 4590 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9049279..9050202 | 19..942 | 4590 | 99.8 | Plus |
| 3L | 28110227 | 3L | 25869334..25869442 | 631..523 | 530 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9048091..9048448 | 578..221 | 350 | 73.2 | Minus |
| 3L | 28110227 | 3L | 9047772..9047884 | 897..785 | 220 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:18:30 has no hits.
BO09836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:28 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-PB | 373..1299 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:14 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32031-PC | 265..1191 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:51 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RC | 930..1859 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:54 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RE | 532..1461 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:54 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9049273..9050202 | 11..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:51 Download gff for
BO09836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9042373..9043302 | 11..942 | 99 | | Plus |
BO09836.5prime Sequence
893 bp (804 high quality bases) assembled on 2006-04-19
> BO09836.5prime
GAAGTTATCAGTCGACATGTTCGCTTTGTGGTATTTAACTTTTGCTGTCG
ATGAAATACGCAAACGTTTAGCTTGGTTATTTAGTTCTAACAAGCCAGCA
GCGCCTGCGCTCGACAACAAGCCAGCGAATCCAGCTCCCGCCAAGGAATC
AGCACCAGCTCCTGCACCTGCTCCAACTCCAAAGCCCGCTGTAGTACCAC
CTGCTCCTAAACCAGATCCCCCAAAACCAGCGCCAGCGGTAGCCAAACCC
ACTCCGGTTCCAGTTCCTGCGACAGCTCCCGCTCCACCGAAGGAAGAACC
TGCTCCAAAGCCCAAACCGGAACCTGTGCCATCACCCGTAGTTGCCCCGC
CAAAACCAACTCCTCCCCCAGCCAAGCCCAGCAGTCCGCCAAAACAAGCC
GACAAGATGCCGATCCCACTGCCAAAATCCTTGACAGAGGCCAATACCAA
TGGCCAAAATGGCAATGCCGCCAATGGCGGTAATGTGGATGAACTGGTGT
TCGGTGGCCAGCAGGCCGAGAAGGTGCTTCCAGCGGCCAAGGAGGCCAGC
AATGACTTCATCAAGGGCGAGACCAATGCCTTCATCCAGTCGATTAAGGA
GGCTCAACAGTTGGGCGAGCGCAAACAAGACACCATGGTTGATGCCGCTG
TTCTCGCTAAACTGGAGGAGGGTTATGCCAAGTTGGCTGCCTCCGACTCC
AAGTCGCTGTTGAAGAAGTACCTGACCAAGGAGGTCTTCGACAACCTGAA
GAACAAGGTCACGCCCACCTTCAAGTCGACCCTGCTGGATGTGATCCAGT
CTGGCCTGGAGAACCACGATTCGGGCGTCGGCATCTACGCTCCCGATGCC
GAGGCTTACACAGTGTTCGCCGACCTGTTCGATCCCATCATCG
BO09836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32031-PA | 1689 | Argk-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
| CG32031-PB | 1299 | Argk-RB | 1..487 | 407..893 | 2410 | 99.7 | Plus |
| CG32031-PC | 1191 | Argk-RC | 107..379 | 621..893 | 1340 | 99.6 | Plus |
| CG32031-PD | 1071 | Argk-RD | 1..259 | 635..893 | 1270 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-RA | 2415 | CG32031-RA | 331..1207 | 17..893 | 4370 | 99.9 | Plus |
| Argk-RB | 2246 | CG32031-RB | 137..970 | 60..893 | 4155 | 99.9 | Plus |
| Argk-RE | 1854 | CG32031-RE | 373..646 | 620..893 | 1355 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9061907..9062468 | 621..60 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 9050088..9050360 | 893..621 | 1350 | 99.6 | Minus |
| 3L | 28110227 | 3L | 9064464..9064507 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:23:01 has no hits.
BO09836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:29 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:15 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32031-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:20:00 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 331..1207 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:39:23 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 331..1207 | 17..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:39:23 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9050088..9050359 | 622..893 | 99 | <- | Minus |
| 3L | 9061907..9062467 | 61..621 | 100 | <- | Minus |
| 3L | 9064464..9064507 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:20:00 Download gff for
BO09836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9043188..9043459 | 622..893 | 99 | <- | Minus |
| arm_3L | 9055007..9055567 | 61..621 | 100 | <- | Minus |
| arm_3L | 9057564..9057607 | 17..60 | 100 | | Minus |
BO09836.complete Sequence
1720 bp (1720 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631590
> BO09836.complete
GAAGTTATCAGTCGACATGTTCGCTTTGTGGTATTTAACTTTTGCTGTCG
ATGAAATACGCAAACGTTTAGCTTGGTTATTTAGTTCTAACAAGCCAGCA
GCGCCTGCGCTCGACAACAAGCCAGCGAATCCAGCTCCCGCCAAGGAATC
AGCACCAGCTCCTGCACCTGCTCCAACTCCAAAGCCCGCTGTAGTACCAC
CTGCTCCTAAACCAGATCCCCCAAAACCAGCGCCAGCGGTAGCCAAACCC
ACTCCGGTTCCAGTTCCTGCGACAGCTCCCGCTCCACCGAAGGAAGAACC
TGCTCCAAAGCCCAAACCGGAACCTGTGCCATCACCCGTAGTTGCCCCGC
CAAAACCAACTCCTCCCCCAGCCAAGCCCAGCAGTCCGCCAAAACAAGCC
GACAAGATGCCGATCCCACTGCCAAAATCCTTGACAGAGGCCAATACCAA
TGGCCAAAATGGCAATGCCGCCAATGGCGGTAATGTGGATGAACTGGTGT
TCGGTGGCCAGCAGGCCGAGAAGGTGCTTCCAGCGGCCAAGGAGGCCAGC
AATGACTTCATCAAGGGCGAGACCAATGCCTTCATCCAGTCGATTAAGGA
GGCTCAACAGTTGGGCGAGCGCAAACAAGACACCATGGTTGATGCCGCTG
TTCTCGCTAAACTGGAGGAGGGTTATGCCAAGTTGGCTGCCTCCGACTCC
AAGTCGCTGTTGAAGAAGTACCTGACCAAGGAGGTCTTCGACAACCTGAA
GAACAAGGTCACGCCCACCTTCAAGTCGACCCTGCTGGATGTGATCCAGT
CTGGCCTGGAGAACCACGATTCCGGCGTCGGCATCTACGCTCCCGATGCC
GAGGCTTACACAGTGTTCGCCGACCTGTTCGATCCCATCATCGAGGACTA
CCATGGTGGCTTCAAGAAGACCGACAAGCACCCGGCCTCCAACTTTGGCG
ATGTGTCCACCTTCGGCAACGTTGACCCCACCAACGAGTACGTGATCTCC
ACTCGCGTGCGTTGCGGTCGCTCCATGCAGGGATACCCCTTCAACCCCTG
CTTGACCGAGGCCCAGTACAAGGAGATGGAAAGCAAGGTCAGCAGCACCC
TGTCCGGTCTGGAAGGTGAGCTGAAGGGCAAGTTCTACCCCCTGACTGGC
ATGGAGAAGGCCGTCCAGCAGCAGCTGATCGACGACCACTTCCTGTTCAA
GGAGGGCGATCGTTTCCTGCAGGCCGCCAACGCCTGCCGCTTCTGGCCCA
GCGGCCGTGGCATCTACCACAACGATGCCAAGACCTTCCTGGTCTGGTGC
AACGAGGAGGACCATCTCCGCATCATCTCCATGCAGCAGGGTGGTGATCT
GGGCCAGATCTACAAGCGTCTGGTGACCGCCGTCAACGAAATCGAGAAGC
GTGTGCCATTCAGCCACGACGACCGTCTCGGTTTCCTGACCTTCTGCCCC
ACCAACCTGGGCACCACCATCCGTGCCTCCGTGCACATCAAGGTGCCCAA
GCTGGCATCCAACAAGGCCAAGCTGGAGGAGGTTGCCGCCAAGTACAACC
TGCAGGTGCGCGGAACCCGCGGTGAGCACACCGAGGCTGAGGGTGGTGTC
TACGACATCTCCAACAAGCGTCGCATGGGTCTGACCGAGTTCGAGGCCGT
CAAGGAGATGTACGATGGCATCACCGAGCTGATCAAGCTCGAGAAGAGCC
TGGCAAGCTTTCTAGACCAT
BO09836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-RA | 1689 | CG32031-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| Argk-RB | 1299 | CG32031-PB | 1..1296 | 407..1702 | 6480 | 100 | Plus |
| Argk-RE | 1128 | CG32031-PE | 43..1125 | 620..1702 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-RA | 2415 | CG32031-RA | 331..2016 | 17..1702 | 8430 | 100 | Plus |
| Argk-RB | 2246 | CG32031-RB | 137..1779 | 60..1702 | 8215 | 100 | Plus |
| Argk-RE | 1854 | CG32031-RE | 373..1455 | 620..1702 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9049279..9050360 | 1702..621 | 5410 | 100 | Minus |
| 3L | 28110227 | 3L | 9061907..9062468 | 621..60 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 25869334..25869442 | 1090..1198 | 530 | 99.1 | Plus |
| 3L | 28110227 | 3L | 9047646..9048448 | 698..1500 | 415 | 70.1 | Plus |
| 3L | 28110227 | 3L | 9064464..9064507 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:30:45 has no hits.
BO09836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:54 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 1..1689 | 17..1706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:06 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 336..2016 | 22..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:21 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 336..2016 | 22..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:54 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 331..2022 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:34 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Argk-RA | 336..2016 | 22..1704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:34 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9049277..9050359 | 622..1704 | 99 | <- | Minus |
| 3L | 9061907..9062467 | 61..621 | 100 | <- | Minus |
| 3L | 9064464..9064502 | 22..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:21 Download gff for
BO09836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9042377..9043459 | 622..1704 | 99 | <- | Minus |
| arm_3L | 9055007..9055567 | 61..621 | 100 | <- | Minus |
| arm_3L | 9057564..9057602 | 22..60 | 100 | | Minus |
BO09836.pep Sequence
Translation from 16 to 1720
> BO09836.pep
MFALWYLTFAVDEIRKRLAWLFSSNKPAAPALDNKPANPAPAKESAPAPA
PAPTPKPAVVPPAPKPDPPKPAPAVAKPTPVPVPATAPAPPKEEPAPKPK
PEPVPSPVVAPPKPTPPPAKPSSPPKQADKMPIPLPKSLTEANTNGQNGN
AANGGNVDELVFGGQQAEKVLPAAKEASNDFIKGETNAFIQSIKEAQQLG
ERKQDTMVDAAVLAKLEEGYAKLAASDSKSLLKKYLTKEVFDNLKNKVTP
TFKSTLLDVIQSGLENHDSGVGIYAPDAEAYTVFADLFDPIIEDYHGGFK
KTDKHPASNFGDVSTFGNVDPTNEYVISTRVRCGRSMQGYPFNPCLTEAQ
YKEMESKVSSTLSGLEGELKGKFYPLTGMEKAVQQQLIDDHFLFKEGDRF
LQAANACRFWPSGRGIYHNDAKTFLVWCNEEDHLRIISMQQGGDLGQIYK
RLVTAVNEIEKRVPFSHDDRLGFLTFCPTNLGTTIRASVHIKVPKLASNK
AKLEEVAAKYNLQVRGTRGEHTEAEGGVYDISNKRRMGLTEFEAVKEMYD
GITELIKLEKSLASFLDH
BO09836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Argk-PA | 562 | CG32031-PA | 1..562 | 1..562 | 2954 | 100 | Plus |
| Argk-PB | 432 | CG32031-PB | 1..432 | 131..562 | 2242 | 100 | Plus |
| Argk-PC | 396 | CG32031-PC | 34..396 | 200..562 | 1883 | 99.4 | Plus |
| Argk-PE | 375 | CG32031-PE | 15..375 | 202..562 | 1882 | 100 | Plus |
| Argk-PG | 356 | CG32031-PG | 1..356 | 207..562 | 1856 | 100 | Plus |
