Clone Sequence Records
BO09837.3prime Sequence
790 bp (788 high quality bases) assembled on 2006-04-19
> BO09837.3prime
ATGGTCTAGAAAGCTTGCATCGCTATCGTCGCGCTTTTTATCGTGGGCAC
TGGGCGTGGCCGGTGTGGGCGTCCCTAGGTCGTCCGGCTTGCTCTCCAGT
GAGAAGGGCGGAATCTTGCAATCGAAGGAGTATCCGTCTTCGCGCTCCAG
CCGGAAGGTGCCCCACATATGGCCGCTGGGAGCCTGCAGGCTCACATGGC
TGCTGTACTGAAAGGCGGGCAGCCGGGGGCTCAGAATGGGCTCCTGGCCC
ACCACTCCTCTTCCGCGCACCGTCTCCAGGGTTCCAGACAGTGAGAAAAT
GCGCCAGTGGCGCTCGCGCAGCTGCACGCTCAGCTCGCCGAGGTTCTCCA
GTCGGATGCAGTAGCGCCACCAGTAGACCGAACTAGCAGGCGTCTCCCGG
CAACCCATGTAGAAGGGAATCACGGTAATGCGCACGTTCTCCGTGGTCTC
CTTGTGTACATCGCTCATGTCCAGCCAGGGATGGTTCTTCTCCTGCCACG
CCTTCAGAGTGTCCTGGCCCACAAATGGCGGGTCCGCGTCCGGAGCGTGC
GTAAGGAACTTATCGAACAGCTCGTGCTGCAGCGGACTCTTCTCGCTGGA
GCTGTAAGGCATGATGTCCTCGTGGGCCACGTAGTCCAGCCCGGGGATGG
CGTAGAGGCTGCGGTTGGAGTCCTGGTTGCCGAGAAAGGTGACCGCCTCG
GTCTGGGCGCGAATGTACGGGCAATCGCGGGTGTCTATGAGCACCTGATA
AAAGGTTTGCACCTTGCCCTTGACCTCTTTGGGATCCACT
BO09837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 1233 | CG12162-RA | 459..1230 | 790..19 | 3860 | 100 | Minus |
CG12162-PB | 1296 | CG12162-RB | 522..1293 | 790..19 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RB | 1639 | CG12162-RB | 738..1509 | 790..19 | 3860 | 100 | Minus |
CG12162-RA | 1595 | CG12162-RA | 721..1492 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5469085..5469436 | 370..19 | 1760 | 100 | Minus |
3R | 32079331 | 3R | 5468689..5469030 | 711..370 | 1710 | 100 | Minus |
3R | 32079331 | 3R | 5468551..5468629 | 790..712 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:39:51 has no hits.
BO09837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:30 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 459..1233 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:17 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PB | 522..1296 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:23 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 721..1496 | 14..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:55 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 721..1496 | 14..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:55 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5469086..5469440 | 14..369 | 99 | | Minus |
3R | 5468551..5468629 | 712..790 | 100 | -> | Minus |
3R | 5468689..5469030 | 370..711 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:23 Download gff for
BO09837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1294273..1294351 | 712..790 | 100 | -> | Minus |
arm_3R | 1294411..1294752 | 370..711 | 100 | -> | Minus |
arm_3R | 1294808..1295162 | 14..369 | 99 | | Minus |
BO09837.5prime Sequence
953 bp (821 high quality bases) assembled on 2006-04-19
> BO09837.5prime
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGC
BO09837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 1233 | CG12162-RA | 1..937 | 17..953 | 4685 | 100 | Plus |
CG12162-PB | 1296 | CG12162-RB | 174..1000 | 127..953 | 4135 | 100 | Plus |
CG12162-PB | 1296 | CG12162-RB | 11..120 | 17..126 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1595 | CG12162-RA | 263..1199 | 17..953 | 4685 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 390..1216 | 127..953 | 4135 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 227..336 | 17..126 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5468203..5468629 | 127..553 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 5468689..5469030 | 554..895 | 1710 | 100 | Plus |
3R | 32079331 | 3R | 5468040..5468149 | 17..126 | 550 | 100 | Plus |
3R | 32079331 | 3R | 5469085..5469143 | 895..953 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:20:52 has no hits.
BO09837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:31 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:19 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:51 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 259..1199 | 13..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:44 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 259..1199 | 13..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:44 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5468036..5468149 | 13..126 | 98 | -> | Plus |
3R | 5468203..5468629 | 127..553 | 100 | -> | Plus |
3R | 5468689..5469030 | 554..895 | 100 | -> | Plus |
3R | 5469086..5469143 | 896..953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:51 Download gff for
BO09837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1293758..1293871 | 13..126 | 98 | -> | Plus |
arm_3R | 1293925..1294351 | 127..553 | 100 | -> | Plus |
arm_3R | 1294411..1294752 | 554..895 | 100 | -> | Plus |
arm_3R | 1294808..1294865 | 896..953 | 100 | | Plus |
BO09837.complete Sequence
1264 bp (1264 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631591
> BO09837.complete
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGCGCCACTGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGGTGCGC
GGAAGAGGAGTGGTGGGCCAGGAGCCCATTCTGAGCCCCCGGCTGCCCGC
CTTTCAGTACAGCAGCCATGTGAGCCTGCAGGCTCCCAGCGGCCATATGT
GGGGCACCTTCCGGCTGGAGCGCGAAGACGGATACTCCTTCGATTGCAAG
ATTCCGCCCTTCTCACTGGAGAGCAAGCCGGACGACCTAGGGACGCCCAC
ACCGGCCACGCCCAGTGCCCACGATAAAAAGCGCGACGATAGCGATGCAA
GCTTTCTAGACCAT
BO09837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1233 | CG12162-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
CG12162-RB | 1296 | CG12162-PB | 174..1293 | 127..1246 | 5600 | 100 | Plus |
CG12162-RB | 1296 | CG12162-PB | 11..120 | 17..126 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1595 | CG12162-RA | 263..1492 | 17..1246 | 6150 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 390..1509 | 127..1246 | 5600 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 227..336 | 17..126 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5468203..5468629 | 127..553 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 5469085..5469436 | 895..1246 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 5468689..5469030 | 554..895 | 1710 | 100 | Plus |
3R | 32079331 | 3R | 5468040..5468149 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:44:48 has no hits.
BO09837.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:21 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 1..1233 | 17..1250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:12 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 244..1481 | 13..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:57 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 263..1492 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:21 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 244..1481 | 13..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:54 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 263..1492 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:54 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5468689..5469030 | 554..895 | 100 | -> | Plus |
3R | 5469086..5469436 | 896..1248 | 99 | | Plus |
3R | 5468040..5468149 | 17..126 | 100 | -> | Plus |
3R | 5468203..5468629 | 127..553 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:57 Download gff for
BO09837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1293762..1293871 | 17..126 | 100 | -> | Plus |
arm_3R | 1293925..1294351 | 127..553 | 100 | -> | Plus |
arm_3R | 1294411..1294752 | 554..895 | 100 | -> | Plus |
arm_3R | 1294808..1295158 | 896..1248 | 99 | | Plus |
BO09837.pep Sequence
Translation from 16 to 1264
> BO09837.pep
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSDASFLDH
BO09837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 410 | CG12162-PA | 1..410 | 1..410 | 2180 | 100 | Plus |
CG12162-PB | 431 | CG12162-PB | 58..431 | 37..410 | 1987 | 99.7 | Plus |