Clone BO09837 Report

Search the DGRC for BO09837

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG12162-RA
Protein status:BO09837.pep: validated full length
Sequenced Size:1264

Clone Sequence Records

BO09837.3prime Sequence

790 bp (788 high quality bases) assembled on 2006-04-19

> BO09837.3prime
ATGGTCTAGAAAGCTTGCATCGCTATCGTCGCGCTTTTTATCGTGGGCAC
TGGGCGTGGCCGGTGTGGGCGTCCCTAGGTCGTCCGGCTTGCTCTCCAGT
GAGAAGGGCGGAATCTTGCAATCGAAGGAGTATCCGTCTTCGCGCTCCAG
CCGGAAGGTGCCCCACATATGGCCGCTGGGAGCCTGCAGGCTCACATGGC
TGCTGTACTGAAAGGCGGGCAGCCGGGGGCTCAGAATGGGCTCCTGGCCC
ACCACTCCTCTTCCGCGCACCGTCTCCAGGGTTCCAGACAGTGAGAAAAT
GCGCCAGTGGCGCTCGCGCAGCTGCACGCTCAGCTCGCCGAGGTTCTCCA
GTCGGATGCAGTAGCGCCACCAGTAGACCGAACTAGCAGGCGTCTCCCGG
CAACCCATGTAGAAGGGAATCACGGTAATGCGCACGTTCTCCGTGGTCTC
CTTGTGTACATCGCTCATGTCCAGCCAGGGATGGTTCTTCTCCTGCCACG
CCTTCAGAGTGTCCTGGCCCACAAATGGCGGGTCCGCGTCCGGAGCGTGC
GTAAGGAACTTATCGAACAGCTCGTGCTGCAGCGGACTCTTCTCGCTGGA
GCTGTAAGGCATGATGTCCTCGTGGGCCACGTAGTCCAGCCCGGGGATGG
CGTAGAGGCTGCGGTTGGAGTCCTGGTTGCCGAGAAAGGTGACCGCCTCG
GTCTGGGCGCGAATGTACGGGCAATCGCGGGTGTCTATGAGCACCTGATA
AAAGGTTTGCACCTTGCCCTTGACCTCTTTGGGATCCACT

BO09837.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 1233 CG12162-RA 459..1230 790..19 3860 100 Minus
CG12162-PB 1296 CG12162-RB 522..1293 790..19 3860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RB 1639 CG12162-RB 738..1509 790..19 3860 100 Minus
CG12162-RA 1595 CG12162-RA 721..1492 790..19 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5469085..5469436 370..19 1760 100 Minus
3R 32079331 3R 5468689..5469030 711..370 1710 100 Minus
3R 32079331 3R 5468551..5468629 790..712 395 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:39:51 has no hits.

BO09837.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:30 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 459..1233 15..790 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:17 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PB 522..1296 15..790 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:23 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 721..1496 14..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:55 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 721..1496 14..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:55 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5469086..5469440 14..369 99   Minus
3R 5468551..5468629 712..790 100 -> Minus
3R 5468689..5469030 370..711 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:23 Download gff for BO09837.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1294273..1294351 712..790 100 -> Minus
arm_3R 1294411..1294752 370..711 100 -> Minus
arm_3R 1294808..1295162 14..369 99   Minus

BO09837.5prime Sequence

953 bp (821 high quality bases) assembled on 2006-04-19

> BO09837.5prime
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGC

BO09837.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 1233 CG12162-RA 1..937 17..953 4685 100 Plus
CG12162-PB 1296 CG12162-RB 174..1000 127..953 4135 100 Plus
CG12162-PB 1296 CG12162-RB 11..120 17..126 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1595 CG12162-RA 263..1199 17..953 4685 100 Plus
CG12162-RB 1639 CG12162-RB 390..1216 127..953 4135 100 Plus
CG12162-RB 1639 CG12162-RB 227..336 17..126 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5468203..5468629 127..553 2135 100 Plus
3R 32079331 3R 5468689..5469030 554..895 1710 100 Plus
3R 32079331 3R 5468040..5468149 17..126 550 100 Plus
3R 32079331 3R 5469085..5469143 895..953 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:20:52 has no hits.

BO09837.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:31 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:19 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:51 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 259..1199 13..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:44 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 259..1199 13..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:44 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5468036..5468149 13..126 98 -> Plus
3R 5468203..5468629 127..553 100 -> Plus
3R 5468689..5469030 554..895 100 -> Plus
3R 5469086..5469143 896..953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:51 Download gff for BO09837.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1293758..1293871 13..126 98 -> Plus
arm_3R 1293925..1294351 127..553 100 -> Plus
arm_3R 1294411..1294752 554..895 100 -> Plus
arm_3R 1294808..1294865 896..953 100   Plus

BO09837.complete Sequence

1264 bp (1264 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631591

> BO09837.complete
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGCGCCACTGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGGTGCGC
GGAAGAGGAGTGGTGGGCCAGGAGCCCATTCTGAGCCCCCGGCTGCCCGC
CTTTCAGTACAGCAGCCATGTGAGCCTGCAGGCTCCCAGCGGCCATATGT
GGGGCACCTTCCGGCTGGAGCGCGAAGACGGATACTCCTTCGATTGCAAG
ATTCCGCCCTTCTCACTGGAGAGCAAGCCGGACGACCTAGGGACGCCCAC
ACCGGCCACGCCCAGTGCCCACGATAAAAAGCGCGACGATAGCGATGCAA
GCTTTCTAGACCAT

BO09837.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1233 CG12162-PA 1..1230 17..1246 6150 100 Plus
CG12162-RB 1296 CG12162-PB 174..1293 127..1246 5600 100 Plus
CG12162-RB 1296 CG12162-PB 11..120 17..126 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1595 CG12162-RA 263..1492 17..1246 6150 100 Plus
CG12162-RB 1639 CG12162-RB 390..1509 127..1246 5600 100 Plus
CG12162-RB 1639 CG12162-RB 227..336 17..126 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5468203..5468629 127..553 2135 100 Plus
3R 32079331 3R 5469085..5469436 895..1246 1760 100 Plus
3R 32079331 3R 5468689..5469030 554..895 1710 100 Plus
3R 32079331 3R 5468040..5468149 17..126 550 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:44:48 has no hits.

BO09837.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:21 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 1..1233 17..1250 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:12 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 244..1481 13..1251 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:57 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 263..1492 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:21 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 244..1481 13..1251 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:54 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 263..1492 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:54 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5468689..5469030 554..895 100 -> Plus
3R 5469086..5469436 896..1248 99   Plus
3R 5468040..5468149 17..126 100 -> Plus
3R 5468203..5468629 127..553 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:57 Download gff for BO09837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1293762..1293871 17..126 100 -> Plus
arm_3R 1293925..1294351 127..553 100 -> Plus
arm_3R 1294411..1294752 554..895 100 -> Plus
arm_3R 1294808..1295158 896..1248 99   Plus

BO09837.pep Sequence

Translation from 16 to 1264

> BO09837.pep
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSDASFLDH

BO09837.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 410 CG12162-PA 1..410 1..410 2180 100 Plus
CG12162-PB 431 CG12162-PB 58..431 37..410 1987 99.7 Plus