Clone Sequence Records
BO09850.3prime Sequence
908 bp (799 high quality bases) assembled on 2006-04-19
> BO09850.3prime
ATGGTCTAGAAAGCTTGCGTCGGCTGTGGCGCCCGGATAGCGCTCAATGA
GCATAGCCACGCCCTGTCCACCGGCCGCGCAGGCGGCGACCACGCCCAAC
TTGCCATCCTCGCGCACCAGGCGGTTGGCGGTGTGCATGCAGAGGCGGAC
TCCTGTGGCGGCGAAGGGGTGGCCGATGGACAGAGAACCGCCCCAGTTGT
TCCACTTGGACAGGTCGGGAGTGCCGACCTTCTCGTTCAGGCCCAAGTAA
GTCTTGCAGAACCAGTCGGAGTCCAGGGCCTTCAGATTGGCCACGATCTG
TCCGGCGAACGCCTCGTGGATCTCCCACGAGTCAATGTCCTTCAGCGTGA
GTCCAGCCTTCTTGAGCAGCTTGGGAATTCCGTAGGCGGGTCCCAGCAGC
AGCTGGTTGACGGGATCCTGCGACACGAACAGGAAGTCGCGCAGATAGGC
CTTGGGCTTGAGGCCCAGCTGCTTGGCCTTCTCCTCGGTCATGATAATGC
AAGCAGAAGCTCCGTCCGTGAGGAAGGAGGCGTTGGCTGCTGTCACAGTG
CCGTAGGGCTTCACAAAGGCGGGCCTCAGCTTTGCCAGGCTCTCGGGACT
AGACACGCGGATGCCGTTGTCCTTGTCCACGATCTGGTCCACGCCGGACA
CCTTGAAGGGAACCAGATCGGTGAAGTAGCCCTTCTCCTGGGCCTCCTTG
GCCAGTGTGTGGGATCGCAGGGCGTACTCGTCCTGCTCGCTCCGGGATAC
GTTGAAGGCGGATGCCAAGCGATCGGCCGAGTGTCCCATGGTCTCGCCGG
AGGAGAACTCCGCAACGGCGGGCAGCTCGGGGGCCAGGAAGTCTGGCCTG
AANGTGGACAGCAGGGCCAGCCGCTGGCCCAGGGTCTTTGCCCTTGTGGC
TTTCANGA
BO09850.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4581-PA | 1410 | Thiolase-RA | 534..1407 | 892..19 | 4351 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-RA | 1593 | CG4581-RA | 599..1485 | 905..19 | 4379 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23866756..23867642 | 19..905 | 4379 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:46 has no hits.
BO09850.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:53 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4581-PA | 519..1410 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:50 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4581-PA | 519..1410 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:30 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 597..1489 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:25 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 597..1489 | 15..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:25 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23866751..23867643 | 15..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:30 Download gff for
BO09850.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19754274..19755166 | 15..907 | 99 | | Plus |
BO09850.5prime Sequence
955 bp (756 high quality bases) assembled on 2006-04-19
> BO09850.5prime
GAAGTTATCAGTCGACATGAGCCTTCAAAATGTCTGCCGCAAGGGTAACG
CCTTCAACCTGTTGAATGTCGCCAGGAAAGTTCAATGCCGCGCTCTATCG
GCCGCTGTGGCGAATCCACAACCGAAGCAGAAGAACAGCCAGAATATCGT
GCTCGTGGATGGAGTCCGCACACCCTTTCTGACCTCCGGAACCACCTACT
CCAAGCTGATGCCCCATGAACTGGCCAGGCACTCGCTTTTGTCATTGCTG
CAAAAGAACCGCCTGGACAAGGAGCTCATCGACTACATCGTGTACGGCAG
CGTCATCCAGGAGGTGAAGACCTCCAACATTGCCAGGGAGGCAGCCTTGG
CAGCTGGATTCAGCAACAAGACACCTGCCCACACCGTCACCATGGCCTGC
ATCAGTTCCAATGCGGCCATCACCACGGGCATGGGTCTGATAGCCACCAA
CACCTACGATGTCATCGTTGCCGGCGGCGTGGAGTTCATGTCCGATGTGC
CCATTCGCCACTCCCGCAAGATGCGCTCCCTGCTCCTGAAAGCCAACAAG
GCAAAGACCCTGGGCCAGCGGCTGGCCCTGCTGTCCACCTTCAGGCCAGA
CTTCCTGGCCCCCGAGCTGCCCGCCGTTGCGGAGTTCTCCTCCGGCGAGA
CCATGGGACACTCGGCCGATCGCTTGGCATCCGCCTTCAACGTATCCCGG
AGCGAGCAGGACGAGTACGCCCTGCGATCCCACACACTGGCCAAGGAGGC
CCAGGAGAAGGGCTACTTCACCGATCTGGTTCCCTTCAAGGTGTCCGGCG
TGGACCAGATCGTGAACAAGGACAACGGCATCCGCGTGTCTAGTCCCGAG
AGCCTGGCAAAGCTGAAGCCCGCCTTTGTGAAGCCCTACGGCACTGTGAC
AGCAGCCAACGCCTCCTTCCTCACGGACGGAGCTTCTGCTTGCATTATCA
TGACC
BO09850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4581-PA | 1410 | Thiolase-RA | 1..939 | 17..955 | 4645 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-RA | 1593 | CG4581-RA | 79..1017 | 17..955 | 4665 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23867224..23867764 | 955..415 | 2675 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23867819..23867994 | 416..241 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 23868051..23868214 | 242..79 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 23868462..23868525 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:48:30 has no hits.
BO09850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:54 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4581-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:52 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4581-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:40:19 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 72..1017 | 8..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:06 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 72..1017 | 8..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:06 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23867224..23867763 | 416..955 | 99 | <- | Minus |
| 2R | 23867820..23867994 | 241..415 | 100 | <- | Minus |
| 2R | 23868053..23868212 | 81..240 | 100 | <- | Minus |
| 2R | 23868462..23868532 | 8..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:40:19 Download gff for
BO09850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19754747..19755286 | 416..955 | 99 | <- | Minus |
| arm_2R | 19755343..19755517 | 241..415 | 100 | <- | Minus |
| arm_2R | 19755576..19755735 | 81..240 | 100 | <- | Minus |
| arm_2R | 19755985..19756055 | 8..80 | 94 | | Minus |
BO09850.complete Sequence
1441 bp (1441 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631592
> BO09850.complete
GAAGTTATCAGTCGACATGAGCCTTCAAAATGTCTGCCGCAAGGGTAACG
CCTTCAACCTGTTGAATGTCGCCAGGAAAGTTCAATGCCGCGCTCTATCG
GCCGCTGTGGCGAATCCACAACCGAAGCAGAAGAACAGCCAGAATATCGT
GCTCGTGGATGGAGTCCGCACACCCTTTCTGACCTCCGGAACCACCTACT
CCAAGCTGATGCCCCATGAACTGGCCAGGCACTCGCTTTTGTCATTGCTG
CAAAAGAACCGCCTGGACAAGGAGCTCATCGACTACATCGTGTACGGCAG
CGTCATCCAGGAGGTGAAGACCTCCAACATTGCCAGGGAGGCAGCCTTGG
CAGCTGGATTCAGCAACAAGACACCTGCCCACACCGTCACCATGGCCTGC
ATCAGTTCCAATGCGGCCATCACCACGGGCATGGGTCTGATAGCCACCAA
CACCTACGATGTCATCGTTGCCGGCGGCGTGGAGTTCATGTCCGATGTGC
CCATTCGCCACTCCCGCAAGATGCGCTCCCTGCTCCTGAAAGCCAACAAG
GCAAAGACCCTGGGCCAGCGGCTGGCCCTGCTGTCCACCTTCAGGCCAGA
CTTCCTGGCCCCCGAGCTGCCCGCCGTTGCGGAGTTCTCCTCCGGCGAGA
CCATGGGACACTCGGCCGATCGCTTGGCATCCGCCTTCAACGTATCCCGG
AGCGAGCAGGACGAGTACGCCCTGCGATCCCACACACTGGCCAAGGAGGC
CCAGGAGAAGGGCTACTTCACCGATCTGGTTCCCTTCAAGGTGTCCGGCG
TGGACCAGATCGTGGACAAGGACAACGGCATCCGCGTGTCTAGTCCCGAG
AGCCTGGCAAAGCTGAGGCCCGCCTTTGTGAAGCCCTACGGCACTGTGAC
AGCAGCCAACGCCTCCTTCCTCACGGACGGAGCTTCTGCTTGCATTATCA
TGACCGAGGAGAAGGCCAAGCAGCTGGGCCTCAAGCCCAAGGCCTATCTG
CGCGACTTCCTGTTCGTGTCGCAGGATCCCGTCAACCAGCTGCTGCTGGG
ACCCGCCTACGGAATTCCCAAGCTGCTCAAGAAGGCTGGACTCACGCTGA
AGGACATTGACTCGTGGGAGATCCACGAGGCGTTCGCCGGACAGATCGTG
GCCAATCTGAAGGCCCTGGACTCCGACTGGTTCTGCAAGACTTACTTGGG
CCTGAACGAGAAGGTCGGCACTCCCGACCTGTCCAAGTGGAACAACTGGG
GCGGTTCTCTGTCCATCGGCCACCCCTTCGCCGCCACAGGAGTCCGCCTC
TGCATGCACACCGCCAACCGCCTGGTGCGCGAGGATGGCAAGTTGGGCGT
GGTCGCCGCCTGCGCGGCCGGTGGACAGGGCGTGGCTATGCTCATTGAGC
GCTATCCGGGCGCCACAGCCGACGCAAGCTTTCTAGACCAT
BO09850.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-RA | 1410 | CG4581-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-RA | 1593 | CG4581-RA | 79..1485 | 17..1423 | 7035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23866756..23867764 | 1423..415 | 5045 | 100 | Minus |
| 2R | 25286936 | 2R | 23867819..23867994 | 416..241 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 23868051..23868214 | 242..79 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 23868462..23868525 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:41 has no hits.
BO09850.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:22 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 1..1410 | 17..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:14 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 85..1502 | 8..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:41 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 79..1485 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:22 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 85..1502 | 8..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:42 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thiolase-RA | 79..1485 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:42 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23866753..23867763 | 416..1425 | 99 | <- | Minus |
| 2R | 23867820..23867994 | 241..415 | 100 | <- | Minus |
| 2R | 23868053..23868212 | 81..240 | 100 | <- | Minus |
| 2R | 23868462..23868525 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:41 Download gff for
BO09850.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19754276..19755286 | 416..1425 | 99 | <- | Minus |
| arm_2R | 19755343..19755517 | 241..415 | 100 | <- | Minus |
| arm_2R | 19755576..19755735 | 81..240 | 100 | <- | Minus |
| arm_2R | 19755985..19756048 | 17..80 | 100 | | Minus |
BO09850.pep Sequence
Translation from 16 to 1441
> BO09850.pep
MSLQNVCRKGNAFNLLNVARKVQCRALSAAVANPQPKQKNSQNIVLVDGV
RTPFLTSGTTYSKLMPHELARHSLLSLLQKNRLDKELIDYIVYGSVIQEV
KTSNIAREAALAAGFSNKTPAHTVTMACISSNAAITTGMGLIATNTYDVI
VAGGVEFMSDVPIRHSRKMRSLLLKANKAKTLGQRLALLSTFRPDFLAPE
LPAVAEFSSGETMGHSADRLASAFNVSRSEQDEYALRSHTLAKEAQEKGY
FTDLVPFKVSGVDQIVDKDNGIRVSSPESLAKLRPAFVKPYGTVTAANAS
FLTDGASACIIMTEEKAKQLGLKPKAYLRDFLFVSQDPVNQLLLGPAYGI
PKLLKKAGLTLKDIDSWEIHEAFAGQIVANLKALDSDWFCKTYLGLNEKV
GTPDLSKWNNWGGSLSIGHPFAATGVRLCMHTANRLVREDGKLGVVAACA
AGGQGVAMLIERYPGATADASFLDH
BO09850.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thiolase-PA | 469 | CG4581-PA | 1..469 | 1..469 | 2385 | 100 | Plus |
| CG9149-PA | 392 | CG9149-PA | 3..390 | 43..462 | 446 | 30 | Plus |
| CG10932-PB | 410 | CG10932-PB | 25..409 | 44..462 | 441 | 29.1 | Plus |
| CG10932-PA | 410 | CG10932-PA | 25..409 | 44..462 | 441 | 29.1 | Plus |
| yip2-PA | 398 | CG4600-PA | 5..396 | 41..461 | 400 | 32.1 | Plus |
