Clone Sequence Records
BO09852.3prime Sequence
828 bp (813 high quality bases) assembled on 2006-04-19
> BO09852.3prime
ATGGTCTAGAAAGCTTGCACAAATGCCGGCTTTGGGAAAGGTGCCATCGT
TAGCGCCAGTTCCACAAGGACCTCCGCAGCGCTGGAAGGCACCTGGCGGT
CCGTAGCTAAGTTTCTGGATGGTACACTTCTCAATAGGTCCGGTTGGCCG
GCAGTAGGATGTGTACCTGGCCCACGGCAGTGGCTCCTTGGGCGGCACAC
AGTTCGGCAAGTAGCTGAGTTTGTATGTGGTGCACTTTTCCATGGGTCCC
TCGTTCCGGCAGAATCCCTGTCGTGGTCGGACGGACTCGGCGCGTGGGAA
ACAGGTGACATCCACCGGCATGTACGACAACTTGTTCACCGTGCAGCGCT
CCATGGCTCCAGTGGGCCGGCAGAAGGCCGTTCTCGGCATGATCGGAGCC
CTCCTCACGTGGGGCTTGGCCACAAAATCGTGTTTCTGAGTGGTCATCGC
ATACATGGGCCCGTCGAATCGCAGACCATTTTCCATCGGGCGAATCGGAG
GAGTGCGCTCCGTGCAGTTCGGTTGATAGGACAGCTTTTGAATGGTGCAC
CTTTCCAGCGGTCCTGAGGGCCGGCAGAAAGTGTCCCTGGGCAGGACGGG
CGCCGGTTTGGTCCTGGAGGCATCCACGGGCATGTAGCTCAGCTTGTACA
CCGTGCTGCCGGAACCGGCGTCGTTGCCACAGAAGCGCAAGGTGGTAAGC
GGCGTCACCGGAGCCGTACGTGCCTCATTGCAGTTGGGCATGTAGCTTAG
GTTGTAGGTGGTGCAGACATTGGAGTAGCGCGGCGGCACACAACGTATTT
TGTCGGCCCAGGGCGTGGGCTCCTTGGC
BO09852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 1485 | CG7131-RA | 673..1482 | 828..19 | 4050 | 100 | Minus |
| CG7131-PB | 1389 | CG7131-RB | 577..1386 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 883..1692 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287080..18287546 | 70..536 | 2335 | 100 | Plus |
| 3R | 32079331 | 3R | 18287602..18287895 | 535..828 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 18286968..18287022 | 19..73 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:18:05 has no hits.
BO09852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:57 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PB | 577..1389 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:57 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PB | 577..1389 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:16:48 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 883..1696 | 13..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:55:50 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 883..1696 | 13..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:55:50 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18286964..18287020 | 13..71 | 94 | <- | Plus |
| 3R | 18287082..18287544 | 72..534 | 100 | <- | Plus |
| 3R | 18287602..18287895 | 535..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:16:48 Download gff for
BO09852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14112686..14112742 | 13..71 | 94 | <- | Plus |
| arm_3R | 14112804..14113266 | 72..534 | 100 | <- | Plus |
| arm_3R | 14113324..14113617 | 535..828 | 100 | | Plus |
BO09852.5prime Sequence
951 bp (868 high quality bases) assembled on 2006-04-19
> BO09852.5prime
GAAGTTATCAGTCGACATGTCCGGTGATTGCAACACGTATTGCCAAAATG
CCTGCGATCCCTGCCAGGCGCCCACGGATTTCTCGCCCTGTCCGCCGAAT
TCAACGTGTCCGCCTTGCGACTGCGGCGACTATGCAGGATGCTGCTACCA
GCAGCCGCCGCGCACCATGCCCATCCTGCCCAAGTCGCACTTCATGCGCT
CCACAGCGCCGCTGGACACGGACACCATATACCGACGATCGTTCTATGCT
AACTGTGGCGACAACATTAGGGCCCGACCCGTAATGCCGTGCTCCCAAAT
ACGAGCATCCACGGCGCCGCTGGAAAAGTGCACCATACAGAAGTTATCCT
ACATGCCACCCTGTCCGGTTAAGCGGACGCCACCCATTGTTCCCATGGAG
AGCGGCCTGCGCTTCGAGGGACCCATCTATGCGATGACCTCGCAGAAGCA
CGACTACGTGCCCAAGGGGATCGTGAAGCGGGATCCCATTAAGCCGCGTG
TGGCTATCTGCACGTCGAATGCACCGATGGAGCGCTGTACTATCCAGAAG
CTGAGCTACATGCCCATCGATGTGTGCCAGAATCCGCCTCCGAAGGCCAT
GGTCCAGGGATCGCACTACTGCAAGCCGGCAGGACCCATGGAGCGCTGCA
CCATCCAAAAGCTGTCCTACATGCCGGTCTGTTTGCCGGCCAAGGAGCCC
ACGCCCTGGGCCGACAAAATACGTTGTGTGCCGCCGCGCTACTCCAATGT
CTGCACCACCTACAACCTAAGCTACATGCCCAACTGCAATGAGGCACGTA
CGGCTCCGGTGACGCCGCTTACCACCTTGCGCTTCTGTGGGCACGACGCC
CGGTCCGGCAGCACGGTGTACAAGCTGAGCTACATGCCCGTGGATGCCTC
CAGGACCAAACCGGCGCCCGTCCTGCCCAGGGACACTTTCTGCCGGNCCT
C
BO09852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 1485 | CG7131-RA | 1..935 | 17..951 | 4556 | 99.4 | Plus |
| CG7131-PB | 1389 | CG7131-RB | 43..839 | 155..951 | 3866 | 99.3 | Plus |
| CG7131-PB | 1389 | CG7131-RB | 1..42 | 48..89 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 210..1145 | 16..951 | 4609 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287633..18288568 | 951..16 | 4609 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:05 has no hits.
BO09852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:22:58 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:30:58 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:43 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1145 | 7..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:30 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1145 | 7..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:30 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18287633..18288574 | 7..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:43 Download gff for
BO09852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14113355..14114296 | 7..951 | 99 | | Minus |
BO09852.complete Sequence
1516 bp (1516 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631593
> BO09852.complete
GAAGTTATCAGTCGACATGTCCGGTGATTGCAACACGTATTGCCAAAATG
CCTGCGATCCCTGCCAGGCGCCCACGGATTTCTCGCCCTGTCCGCCGAAT
TCAACGTGTCCGCCTTGCGACTGCGGCGACTATGCAGGATGCTGCTACCA
GCAGCCGCCGCGCACCATGCCCATCCTGCCCAAGTCGCACTTCATGCGCT
CCACAGCGCCGCTGGACACGGACACCATATACCGACGATCGTTCTATGCT
AACTGTGGCGACAACATTAGGGCCCGACCCGTAATGCCGTGCTCCCAAAT
ACGAGCATCCACGGCGCCGCTGGAAAAGTGCACCATACAGAAGTTATCCT
ACATGCCACCCTGTCCGGTTAAGCGGACGCCACCCATTGTTCCCATGGAG
AGCGGCCTGCGCTTCGAGGGACCCATCTATGCGATGACCTCGCAGAAGCA
CGACTACGTGCCCAAGGGGATCGTGAAGCGGGATCCCATTAAGCCGCGTG
TGGCTATCTGCACGTCGAATGCACCGATGGAGCGCTGTACTATCCAGAAG
CTGAGCTACATGCCCATCGATGTGTGCCAGAATCCGCCTCCGAAGGCCAT
GGTCCAGGGATCGCACTACTGCAAGCCGGCAGGACCCATGGAGCGCTGCA
CCATCCAAAAGCTGTCCTACATGCCGGTCTGTTTGCCGGCCAAGGAGCCC
ACGCCCTGGGCCGACAAAATACGTTGTGTGCCGCCGCGCTACTCCAATGT
CTGCACCACCTACAACCTAAGCTACATGCCCAACTGCAATGAGGCACGTA
CGGCTCCGGTGACGCCGCTTACCACCTTGCGCTTCTGTGGCAACGACGCC
GGTTCCGGCAGCACGGTGTACAAGCTGAGCTACATGCCCGTGGATGCCTC
CAGGACCAAACCGGCGCCCGTCCTGCCCAGGGACACTTTCTGCCGGCCCT
CAGGACCGCTGGAAAGGTGCACCATTCAAAAGCTGTCCTATCAACCGAAC
TGCACGGAGCGCACTCCTCCGATTCGCCCGATGGAAAATGGTCTGCGATT
CGACGGGCCCATGTATGCGATGACCACTCAGAAACACGATTTTGTGGCCA
AGCCCCACGTGAGGAGGGCTCCGATCATGCCGAGAACGGCCTTCTGCCGG
CCCACTGGAGCCATGGAGCGCTGCACGGTGAACAAGTTGTCGTACATGCC
GGTGGATGTCACCTGTTTCCCACGCGCCGAGTCCGTCCGACCACGACAGG
GATTCTGCCGGAACGAGGGACCCATGGAAAAGTGCACCACATACAAACTC
AGCTACTTGCCGAACTGTGTGCCGCCCAAGGAGCCACTGCCGTGGGCCAG
GTACACATCCTACTGCCGGCCAACCGGACCTATTGAGAAGTGTACCATCC
AGAAACTTAGCTACGGACCGCCAGGTGCCTTCCAGCGCTGCGGAGGTCCT
TGTGGAACTGGCGCTAACGATGGCACCTTTCCCAAAGCCGGCATTTGTGC
AAGCTTTCTAGACCAT
BO09852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 1485 | CG7131-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 210..1692 | 16..1498 | 7415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287602..18288568 | 982..16 | 4835 | 100 | Minus |
| 3R | 32079331 | 3R | 18287080..18287546 | 1447..981 | 2335 | 100 | Minus |
| 3R | 32079331 | 3R | 18286968..18287022 | 1498..1444 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:56:27 has no hits.
BO09852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:23 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 1..1485 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:16 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1696 | 7..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:10 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 211..1692 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:24 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1696 | 7..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:22 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 211..1692 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:22 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18286964..18287020 | 1446..1500 | 96 | <- | Minus |
| 3R | 18287082..18287544 | 983..1445 | 100 | <- | Minus |
| 3R | 18287602..18288567 | 17..982 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:10 Download gff for
BO09852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14112686..14112742 | 1446..1500 | 96 | <- | Minus |
| arm_3R | 14112804..14113266 | 983..1445 | 100 | <- | Minus |
| arm_3R | 14113324..14114289 | 17..982 | 100 | | Minus |
BO09852.pep Sequence
Translation from 16 to 1516
> BO09852.pep
MSGDCNTYCQNACDPCQAPTDFSPCPPNSTCPPCDCGDYAGCCYQQPPRT
MPILPKSHFMRSTAPLDTDTIYRRSFYANCGDNIRARPVMPCSQIRASTA
PLEKCTIQKLSYMPPCPVKRTPPIVPMESGLRFEGPIYAMTSQKHDYVPK
GIVKRDPIKPRVAICTSNAPMERCTIQKLSYMPIDVCQNPPPKAMVQGSH
YCKPAGPMERCTIQKLSYMPVCLPAKEPTPWADKIRCVPPRYSNVCTTYN
LSYMPNCNEARTAPVTPLTTLRFCGNDAGSGSTVYKLSYMPVDASRTKPA
PVLPRDTFCRPSGPLERCTIQKLSYQPNCTERTPPIRPMENGLRFDGPMY
AMTTQKHDFVAKPHVRRAPIMPRTAFCRPTGAMERCTVNKLSYMPVDVTC
FPRAESVRPRQGFCRNEGPMEKCTTYKLSYLPNCVPPKEPLPWARYTSYC
RPTGPIEKCTIQKLSYGPPGAFQRCGGPCGTGANDGTFPKAGICASFLDH
BO09852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 494 | CG7131-PA | 1..494 | 1..494 | 2795 | 100 | Plus |
