Clone BO09854 Report

Search the DGRC for BO09854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG4810-RA
Protein status:BO09854.pep: validated full length
Sequenced Size:1687

Clone Sequence Records

BO09854.3prime Sequence

897 bp (791 high quality bases) assembled on 2006-04-19

> BO09854.3prime
ATGGTCTAGAAAGCTTGCGTTATCGTTGGAGTTACTCAAGGGATCGCTGG
ACTCCTCCTCCTCATCGCCGTCGGAGTCGAAGGCGTTTTCCGGAACGTCA
TACAGACGGATCATCGGCTTGTTGGGATCCTTCATGATCAGATACTTTCC
ATCCGGTTGCCTCATCACAAGGTCAATTAGGCAACGCAATACTCCCCAGG
CATTGTCCATGTTCAGGTTGATTTGGGTGGCGAACTCCTGCGGCTTGAAT
TGCTGTGTGCCAAGGATCACGTGACGCAGGTGATCACGCGGATTCATCCT
GGACACATAGCCTAACTTCAGTTGATCGGAACCAGCCAGCACAGCCTCAA
CGGTCCATCGAGCTAGCTTACAAGCATTGTTGCGCAACTCGGAGGCCAAG
ACTGCACCGCGCTGGGTGTCCAACTTCTGGCGCCACTCCACACTGTTGGT
CACCTTGGAGTCCCATTCATTCAGCGCCTTGATCGAGAGGAACTGCACGT
CCCCATTGGGTCCTTGGATAACCCCATTGTGCTTGCAGCGAGCAATCAGC
ACCACATCGTTGCCCAGATCCCACTGACGGTAGCGATAGCCAATGGAGGC
AAGATCCACGCCTGGCTCCTCGAACGGATTGGGCTCCTCAAACATGAAAC
GTGGCTCTTGGTCGCCAATGCGAAGAACCTGCTGGCTAAAGTTGTGATTA
ATTAGAGTGGCCTCCATTGCCAAGCTATGTGCCGAATTGATGGAACCCTC
CTCATCCATCGGAGGTTCTACTGAAGTCTCGTTGACAGTCAGCAAATCAA
ATTGATCATTATATCTCTTATCTAAGAACACCTTAGTGCCCAATTTCTCG
ACTACCACATCCCCAGAGTAATTGGAGCGTGTGCAGCACATTATGGT

BO09854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 1656 CG4810-RA 775..1653 897..19 4370 99.8 Minus
CG10161-PB 1683 eIF-3p66-RB 1540..1580 141..101 155 95.1 Minus
CG10161-PB 1683 eIF-3p66-RB 1404..1488 277..193 150 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 834..1712 897..19 4380 99.9 Minus
eIF-3p66-RB 2012 CG10161-RB 1242..1762 591..71 755 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12193223..12193884 19..680 3310 100 Plus
3R 32079331 3R 12193958..12194178 677..897 1090 99.5 Plus
3R 32079331 3R 23681642..23682067 496..71 750 78.4 Minus
Blast to na_te.dros performed on 2015-02-10 18:17:28 has no hits.

BO09854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:01 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 775..1656 15..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:03 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 775..1656 15..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:10:25 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 834..1715 15..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:32:03 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 834..1715 15..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:32:03 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12193220..12193882 15..678 99 <- Plus
3R 12193960..12194178 679..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:10:25 Download gff for BO09854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8018942..8019604 15..678 99 <- Plus
arm_3R 8019682..8019900 679..897 99   Plus

BO09854.5prime Sequence

901 bp (776 high quality bases) assembled on 2006-04-19

> BO09854.5prime
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAAATGGGC
ACTAANGTGTTCTTAGATAAGAGATATAATGATCAATTTGATTTGCTGAC
T

BO09854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 1656 CG4810-RA 1..885 17..901 4381 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 60..944 17..901 4399 99.8 Plus
eIF-3p66-RB 2012 CG10161-RB 669..983 530..844 255 72.5 Plus
eIF-3p66-RB 2012 CG10161-RB 225..436 68..270 225 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12194068..12194952 901..17 4399 99.8 Minus
3R 32079331 3R 23680829..23681143 530..844 255 72.1 Plus
3R 32079331 3R 23680298..23680357 97..156 210 90 Plus
Blast to na_te.dros performed on 2015-02-12 13:10:30 has no hits.

BO09854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:02 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:04 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:24:58 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..944 11..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:46 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..944 11..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:46 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12194068..12194958 11..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:24:58 Download gff for BO09854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8019790..8020680 11..901 99   Minus

BO09854.complete Sequence

1687 bp (1687 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631594

> BO09854.complete
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGC
ACTAAGGTGTTCTTAGATAAGAGATATAATGATCAATTTGATTTGCTGAC
TGTCAACGAGACTTCAGTAGAACCTCCGATGGATGAGGAGGGTTCCATCA
ATTCGGCACATAGCTTGGCAATGGAGGCCACTCTAATTAATCACAACTTT
AGCCAGCAGGTTCTTCGCATTGGCGACCAAGAGCCACGTTTCATGTTTGA
GGAGCCCAATCCGTTCGAGGAGCCAGGCGTGGATCTTGCCTCCATTGGCT
ATCGCTACCGTCAGTGGGATCTGGGCAACGATGTGGTGCTGATTGCTCGC
TGCAAGCACAATGGGGTTATCCAAGGACCCAATGGGGACGTGCAGTTCCT
CTCGATCAAGGCGCTGAATGAATGGGACTCCAAGGTGACCAACAGTGTGG
AGTGGCGCCAGAAGTTGGACACCCAGCGCGGTGCAGTCTTGGCCTCCGAG
TTGCGCAACAATGCTTGTAAGCTAGCTCGATGGACCGTTGAGGCTGTGCT
GGCTGGTTCCGATCAACTGAAGTTAGGCTATGTGTCCAGGATGAATCCGC
GTGATCACCTGCGTCACGTGATCCTTGGCACACAGCAATTCAAGCCGCAG
GAGTTCGCCACCCAAATCAACCTGAACATGGACAATGCCTGGGGAGTATT
GCGTTGCCTAATTGACCTTGTGATGAGGCAACCGGATGGAAAGTATCTGA
TCATGAAGGATCCCAACAAGCCGATGATCCGTCTGTATGACGTTCCGGAA
AACGCCTTCGACTCCGACGGCGATGAGGAGGAGGAGTCCAGCGATCCCTT
GAGTAACTCCAACGATAACGCAAGCTTTCTAGACCAT

BO09854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 1656 CG4810-PA 1..1653 17..1669 8265 100 Plus
eIF-3p66-RB 1683 CG10161-PB 517..1610 530..1617 815 71.8 Plus
eIF-3p66-RB 1683 CG10161-PB 108..167 97..156 210 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 60..1712 17..1669 8265 100 Plus
eIF-3p66-RB 2012 CG10161-RB 669..1762 530..1617 815 71.8 Plus
eIF-3p66-RB 2012 CG10161-RB 260..319 97..156 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12193958..12194952 1011..17 4975 100 Minus
3R 32079331 3R 12193223..12193884 1669..1008 3310 100 Minus
3R 32079331 3R 23681642..23682067 1192..1617 750 78.4 Plus
3R 32079331 3R 23680829..23681143 530..844 255 72.1 Plus
3R 32079331 3R 23680298..23680357 97..156 210 90 Plus
Blast to na_te.dros performed on 2014-11-28 01:11:02 has no hits.

BO09854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:55 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 17..1673 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:44 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..1715 11..1673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:26 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 60..1712 17..1671 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:55 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..1715 11..1673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:45 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 60..1712 17..1671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:45 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12193221..12193882 1010..1671 99 <- Minus
3R 12193960..12194952 17..1009 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:26 Download gff for BO09854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8018943..8019604 1010..1671 99 <- Minus
arm_3R 8019682..8020674 17..1009 100   Minus

BO09854.pep Sequence

Translation from 16 to 1687

> BO09854.pep
MSNYAPFIKPYVEYNEHGWGPCEVPELDVPYQPFCKSDRLGKICDWTAMV
PEKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQRGRYR
PNMRNNVRSRGRTGRGTPNIASLGGSTAGGATASTTKYGKGRNTRNTQNM
GRRFGRNAPTRIRESSVMVQSDWVSIEEIDFPRLLKLALPNIKDGKDIAT
CGWLEFYDKLYDRVNLRNEKPLQKMDRVVHTVTTTDDPVIRRLSRTMGNV
FATDEILSTIMCCTRSNYSWDVVVEKLGTKVFLDKRYNDQFDLLTVNETS
VEPPMDEEGSINSAHSLAMEATLINHNFSQQVLRIGDQEPRFMFEEPNPF
EEPGVDLASIGYRYRQWDLGNDVVLIARCKHNGVIQGPNGDVQFLSIKAL
NEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQ
LKLGYVSRMNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLID
LVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSDPLSNSND
NASFLDH

BO09854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 551 CG4810-PA 1..551 1..551 2945 100 Plus
eIF-3p66-PB 560 CG10161-PB 9..546 2..543 1969 66.4 Plus