Clone BO09856 Report

Search the DGRC for BO09856

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG11255-RA
Protein status:BO09856.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO09856.3prime Sequence

926 bp (793 high quality bases) assembled on 2006-04-19

> BO09856.3prime
ATGGTCTAGAAAGCTTGCCTCAACGAACTCCGGTTCGCCGGAGTATGTGC
AACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGATG
CAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAAC
GAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAATT
TCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGGA
TCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCTT
CTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGCC
ACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGATG
ATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCGA
TATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGGG
CGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAAG
CCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGGG
CTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCGC
AGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGGC
ACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCTT
TTCCTTCAAGATATTGGCGTACCGATCCTCGCCGACGCAGCCGAAGAACA
CAGCCACCCTGGGCTGTCGAAGAATCCATTGGGCAATTCTCAGAGAATTT
TGCACGGATCCGCCAGCCAGAAACTCAGCCTGGTAGCCTTCGACCAGCTC
CCCGTAGATGGGCATGTGTCGGTCCT

BO09856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PA 1038 CG11255-RA 128..1035 926..19 4540 100 Minus
CG11255-PB 1038 CG11255-RB 128..1035 926..19 4540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 362..1269 926..19 4540 100 Minus
AdenoK-RB 1387 CG11255-RB 169..1076 926..19 4540 100 Minus
AdenoK-RA 1580 CG11255-RA 362..1269 926..19 4540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020293..13020827 19..553 2675 100 Plus
3L 28110227 3L 13021073..13021447 552..926 1875 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:28:38 has no hits.

BO09856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:05 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 128..1038 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:09 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 128..1038 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:29 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 362..1272 15..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:53 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 362..1272 15..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:53 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020289..13020826 15..552 99 <- Plus
3L 13021074..13021447 553..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:29 Download gff for BO09856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13014174..13014547 553..926 100   Plus
arm_3L 13013389..13013926 15..552 99 <- Plus

BO09856.5prime Sequence

935 bp (837 high quality bases) assembled on 2006-04-19

> BO09856.5prime
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCANGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CANGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAAGTTCCCTAT

BO09856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PA 1038 CG11255-RA 1..909 17..925 4507 99.7 Plus
CG11255-PB 1038 CG11255-RB 18..909 34..925 4422 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 235..1153 17..935 4543 99.6 Plus
AdenoK-RA 1580 CG11255-RA 235..1153 17..935 4543 99.6 Plus
AdenoK-RB 1387 CG11255-RB 59..960 34..935 4458 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13021073..13021557 518..34 2425 100 Minus
3L 28110227 3L 13020409..13020827 935..517 2043 99 Minus
Blast to na_te.dros performed on 2015-02-02 12:33:28 has no hits.

BO09856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:06 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:10 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:39 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 229..1153 10..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:37 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 229..1153 10..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:37 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020409..13020826 518..935 99 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:39 Download gff for BO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013509..13013926 518..935 99 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus

BO09856.complete Sequence

1069 bp (1069 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631595

> BO09856.complete
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GGCAAGCTTTCTAGACCAT

BO09856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1038 CG11255-PC 1..1035 17..1051 5175 100 Plus
AdenoK-RA 1038 CG11255-PA 1..1035 17..1051 5175 100 Plus
AdenoK-RB 1038 CG11255-PB 18..1035 34..1051 5090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 235..1269 17..1051 5175 100 Plus
AdenoK-RA 1580 CG11255-RA 235..1269 17..1051 5175 100 Plus
AdenoK-RB 1387 CG11255-RB 59..1076 34..1051 5090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020293..13020827 1051..517 2675 100 Minus
3L 28110227 3L 13021073..13021557 518..34 2425 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:25:53 has no hits.

BO09856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:25 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 1..1038 17..1055 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:17 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 285..1328 10..1055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:54 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 235..1269 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:25 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 285..1328 10..1055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:15 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 235..1269 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:15 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13020291..13020826 518..1053 99 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
3L 13022438..13022454 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:54 Download gff for BO09856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013391..13013926 518..1053 99 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus
arm_3L 13015538..13015554 17..33 100   Minus

BO09856.pep Sequence

Translation from 16 to 1069

> BO09856.pep
MTSTLQEGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVEASFLD
H

BO09856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-PC 345 CG11255-PC 1..345 1..345 1794 100 Plus
AdenoK-PA 345 CG11255-PA 1..345 1..345 1794 100 Plus
AdenoK-PB 345 CG11255-PB 1..345 1..345 1771 98.6 Plus
CG3809-PA 396 CG3809-PA 52..393 5..345 710 44 Plus
Ady43A-PA 366 CG1851-PA 87..363 64..335 267 28 Plus