Clone Sequence Records
BO09856.3prime Sequence
926 bp (793 high quality bases) assembled on 2006-04-19
> BO09856.3prime
ATGGTCTAGAAAGCTTGCCTCAACGAACTCCGGTTCGCCGGAGTATGTGC
AACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGATG
CAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAAC
GAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAATT
TCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGGA
TCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCTT
CTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGCC
ACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGATG
ATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCGA
TATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGGG
CGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAAG
CCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGGG
CTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCGC
AGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGGC
ACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCTT
TTCCTTCAAGATATTGGCGTACCGATCCTCGCCGACGCAGCCGAAGAACA
CAGCCACCCTGGGCTGTCGAAGAATCCATTGGGCAATTCTCAGAGAATTT
TGCACGGATCCGCCAGCCAGAAACTCAGCCTGGTAGCCTTCGACCAGCTC
CCCGTAGATGGGCATGTGTCGGTCCT
BO09856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PA | 1038 | CG11255-RA | 128..1035 | 926..19 | 4540 | 100 | Minus |
CG11255-PB | 1038 | CG11255-RB | 128..1035 | 926..19 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 362..1269 | 926..19 | 4540 | 100 | Minus |
AdenoK-RB | 1387 | CG11255-RB | 169..1076 | 926..19 | 4540 | 100 | Minus |
AdenoK-RA | 1580 | CG11255-RA | 362..1269 | 926..19 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020293..13020827 | 19..553 | 2675 | 100 | Plus |
3L | 28110227 | 3L | 13021073..13021447 | 552..926 | 1875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:38 has no hits.
BO09856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:05 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 128..1038 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:09 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 128..1038 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:42:29 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 362..1272 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:53 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 362..1272 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:53 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020289..13020826 | 15..552 | 99 | <- | Plus |
3L | 13021074..13021447 | 553..926 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:42:29 Download gff for
BO09856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13014174..13014547 | 553..926 | 100 | | Plus |
arm_3L | 13013389..13013926 | 15..552 | 99 | <- | Plus |
BO09856.5prime Sequence
935 bp (837 high quality bases) assembled on 2006-04-19
> BO09856.5prime
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCANGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CANGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAAGTTCCCTAT
BO09856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PA | 1038 | CG11255-RA | 1..909 | 17..925 | 4507 | 99.7 | Plus |
CG11255-PB | 1038 | CG11255-RB | 18..909 | 34..925 | 4422 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 235..1153 | 17..935 | 4543 | 99.6 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 235..1153 | 17..935 | 4543 | 99.6 | Plus |
AdenoK-RB | 1387 | CG11255-RB | 59..960 | 34..935 | 4458 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13021073..13021557 | 518..34 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 13020409..13020827 | 935..517 | 2043 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:33:28 has no hits.
BO09856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:06 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:10 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:00:39 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 229..1153 | 10..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:41:37 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 229..1153 | 10..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:41:37 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020409..13020826 | 518..935 | 99 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:00:39 Download gff for
BO09856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013509..13013926 | 518..935 | 99 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
BO09856.complete Sequence
1069 bp (1069 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631595
> BO09856.complete
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GGCAAGCTTTCTAGACCAT
BO09856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1038 | CG11255-PC | 1..1035 | 17..1051 | 5175 | 100 | Plus |
AdenoK-RA | 1038 | CG11255-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
AdenoK-RB | 1038 | CG11255-PB | 18..1035 | 34..1051 | 5090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 235..1269 | 17..1051 | 5175 | 100 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 235..1269 | 17..1051 | 5175 | 100 | Plus |
AdenoK-RB | 1387 | CG11255-RB | 59..1076 | 34..1051 | 5090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020293..13020827 | 1051..517 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 13021073..13021557 | 518..34 | 2425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:53 has no hits.
BO09856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:25 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 1..1038 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:17 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 285..1328 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:54 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 235..1269 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:25 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 285..1328 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:15 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 235..1269 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:15 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020291..13020826 | 518..1053 | 99 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
3L | 13022438..13022454 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:54 Download gff for
BO09856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013391..13013926 | 518..1053 | 99 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
arm_3L | 13015538..13015554 | 17..33 | 100 | | Minus |
BO09856.pep Sequence
Translation from 16 to 1069
> BO09856.pep
MTSTLQEGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVEASFLD
H
BO09856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-PC | 345 | CG11255-PC | 1..345 | 1..345 | 1794 | 100 | Plus |
AdenoK-PA | 345 | CG11255-PA | 1..345 | 1..345 | 1794 | 100 | Plus |
AdenoK-PB | 345 | CG11255-PB | 1..345 | 1..345 | 1771 | 98.6 | Plus |
CG3809-PA | 396 | CG3809-PA | 52..393 | 5..345 | 710 | 44 | Plus |
Ady43A-PA | 366 | CG1851-PA | 87..363 | 64..335 | 267 | 28 | Plus |