Clone Sequence Records
BO09859.3prime Sequence
960 bp (771 high quality bases) assembled on 2006-04-19
> BO09859.3prime
ATGGTCTAGAAAGCTTGCCTGCGGAACGGGGTGGGCAGGCAGCACCTGAC
CCACACACTCCCCGAATCCGATTCGCAGTCCGTTCTTTTCGCAGTGGCCA
CGGATGATGACCTCGTCAAAGTCCTGGAGGAATTTTCTGGTCTTACCACC
CGGAAGCTCCAATGTTTTGGTGCCCTTCCAGCAGAGCTCTAAAAGTGATC
CGTACGAGTCTGGAGTCTCACCGGAGATCGTTCCGGAGGCCATCAGATCA
CCAGGACGCAGATTACAACCGGTGACTGTGTGATGAGCGATTTGCTGCAG
TGGAGTCCAATAAAGGTGTTTGAAGTTCGACTTTGAAATAAGCGCTTCGT
TTTGATCGGCGGGTTTCAAAGACACCTCGAGGTTGATATCAAAGTTAAAG
GGAATGTTCTGGCGCAGATAGGGAAGCACCTCCGGTTCCTGAGGAAAGTT
GTCCAAGACGAAGGGCTTCAGGGCAGCTGTGGGCACTACCCAAGGGGAGA
TGGTGGTTCCCAGATTCTTTGCGGTGAAGGGGCCCAGTGGCACATATTCC
CACTTCTGAATATCCCTGGCACTCCAGTCGTTCATCAGCGTGAAACCGAA
CACGTTCTTCCAGGCCTCATCCACGCGTATGGGTTCACCCAGCTGATTTC
CCTTACCACCGATAAAGAAAGCCATTTCTAGTTCGAAATCCAGAAGCTTG
CAGGCGCCAAAGACGGGCTTCTCTGCTCCATCGGGAAACGTTTGACCAAG
AGGACGACGGATGGGAGTACCGGAAACCACCACAGAACTTGCACGACCAT
GATAGCCCACCGGCAGATGGCGCCAGTTGGGCATCAGAGCATTGTCTGGT
CCACGGAACATAATGCCGACATTGGTGGCATGGTGGATGGATGAGTAAAA
GTCTGTATAGTCACCAATCTGTGCAGGCAGGTGCAGCTTGATCTCAGACT
GTGGCACAAT
BO09859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14993-PA | 1254 | Faa-RA | 310..1251 | 960..19 | 4710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faa-RA | 1421 | CG14993-RA | 424..1365 | 960..19 | 4710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4072490..4073087 | 363..960 | 2990 | 100 | Plus |
3L | 28110227 | 3L | 4072088..4072431 | 19..362 | 1720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:25:34 has no hits.
BO09859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:11 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-PA | 310..1254 | 18..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:17 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14993-PA | 310..1254 | 18..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:43:17 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 424..1365 | 19..960 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:49:33 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 424..1365 | 19..960 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:49:33 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4072088..4072431 | 19..362 | 100 | <- | Plus |
3L | 4072490..4073087 | 363..960 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:43:17 Download gff for
BO09859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4072088..4072431 | 19..362 | 100 | <- | Plus |
arm_3L | 4072490..4073087 | 363..960 | 100 | | Plus |
BO09859.5prime Sequence
904 bp (763 high quality bases) assembled on 2006-04-19
> BO09859.5prime
GAAGTTATCAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACA
GCGATTTTCCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAAC
AATAAAGTTCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCT
GAAAGCTGTCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGG
CCGAAACTTTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTG
GTAAGAAGCCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCA
CAATGTGGACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGC
TGCACCTGCCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATC
CACCATGCCACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCT
GATGCCCAACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTT
CTGTGGTGGTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTT
CCCGATGGAGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTT
CGAACTAGAAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTG
AACCCATACGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTG
ATGAACGACTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACT
GGGCCCCTTCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAG
TGCCCACAGCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAGGAA
CCGGAGGTGCTTCCCTATCTGCGCCAGAACATTCCCTTTTACTTTGATAT
CAAC
BO09859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14993-PA | 1254 | Faa-RA | 1..888 | 17..904 | 4415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faa-RA | 1421 | CG14993-RA | 115..1002 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4072509..4073091 | 904..322 | 2900 | 99.8 | Minus |
3L | 28110227 | 3L | 4073152..4073369 | 321..104 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 4073754..4073840 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:51:33 has no hits.
BO09859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:12 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:19 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14993-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:11:24 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 115..1002 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:30 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 115..1002 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:30 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4073152..4073369 | 104..321 | 100 | <- | Minus |
3L | 4073754..4073840 | 17..103 | 100 | | Minus |
3L | 4072509..4073091 | 322..904 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:11:24 Download gff for
BO09859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4072509..4073091 | 322..904 | 99 | <- | Minus |
arm_3L | 4073152..4073369 | 104..321 | 100 | <- | Minus |
arm_3L | 4073754..4073840 | 17..103 | 100 | | Minus |
BO09859.complete Sequence
1285 bp (1285 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631596
> BO09859.complete
GAAGTTATCAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACA
GCGATTTTCCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAAC
AATAAAGTTCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCT
GAAAGCTGTCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGG
CCGAAACTTTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTG
GTAAGAAGCCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCA
CAATGTGGACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGC
TGCACCTGCCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATC
CACCATGCCACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCT
GATGCCCAACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTT
CTGTGGTGGTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTT
CCCGATGGAGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTT
CGAACTAGAAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTG
AACCCATACGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTG
ATGAACGACTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACT
GGGCCCCTTCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAG
TGCCCACAGCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAGGAA
CCGGAGGTGCTTCCCTATCTGCGCCAGAACATTCCCTTTAACTTTGATAT
CAACCTCGAGGTGTCTTTGAAACCCGCCGATCAAAACGAAGCGCTTATTT
CAAAGTCGAACTTCAAACACCTTTATTGGACTCCACTGCAGCAAATCGCT
CATCACACAGTCACCGGTTGTAATCTGCGTCCTGGTGATCTGATGGCCTC
CGGAACGATCTCCGGTGAGACTCCAGACTCGTACGGATCACTTTTAGAGC
TCTGCTGGAAGGGCACCAAAACATTGGAGCTTCCGGGTGGTAAGACCAGA
AAATTCCTCCAGGACTTTGACGAGGTCATCATCCGTGGCCACTGCGAAAA
GAACGGACTGCGAATCGGATTCGGGGAGTGTGTGGGTCAGGTGCTGCCTG
CCCACCCCGTTCCGCAGGCAAGCTTTCTAGACCAT
BO09859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faa-RA | 1254 | CG14993-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faa-RA | 1421 | CG14993-RA | 115..1365 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4072490..4073091 | 923..322 | 3010 | 100 | Minus |
3L | 28110227 | 3L | 4072088..4072431 | 1267..924 | 1720 | 100 | Minus |
3L | 28110227 | 3L | 4073152..4073369 | 321..104 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 4073754..4073840 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:24 has no hits.
BO09859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:12 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 1..1254 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:02 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 110..1360 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:21 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 115..1365 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:12 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 110..1360 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:21 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Faa-RA | 115..1365 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:21 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4073152..4073369 | 104..321 | 100 | <- | Minus |
3L | 4073754..4073840 | 17..103 | 100 | | Minus |
3L | 4072086..4072431 | 924..1269 | 99 | <- | Minus |
3L | 4072490..4073091 | 322..923 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:21 Download gff for
BO09859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4072086..4072431 | 924..1269 | 99 | <- | Minus |
arm_3L | 4072490..4073091 | 322..923 | 100 | <- | Minus |
arm_3L | 4073152..4073369 | 104..321 | 100 | <- | Minus |
arm_3L | 4073754..4073840 | 17..103 | 100 | | Minus |
BO09859.pep Sequence
Translation from 16 to 1285
> BO09859.pep
MSQSFVPVPENSDFPLENLPYAVFSTENNKVHRICVAIGEHVLDLKAVSQ
LFPFQVQKSLQAETLNELMGLDFEAWDVVRSQTQKLLTKGSELDHNVDLK
AVSIVPQSEIKLHLPAQIGDYTDFYSSIHHATNVGIMFRGPDNALMPNWR
HLPVGYHGRASSVVVSGTPIRRPLGQTFPDGAEKPVFGACKLLDFELEMA
FFIGGKGNQLGEPIRVDEAWKNVFGFTLMNDWSARDIQKWEYVPLGPFTA
KNLGTTISPWVVPTAALKPFVLDNFPQEPEVLPYLRQNIPFNFDINLEVS
LKPADQNEALISKSNFKHLYWTPLQQIAHHTVTGCNLRPGDLMASGTISG
ETPDSYGSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHCEKNGLRI
GFGECVGQVLPAHPVPQASFLDH
BO09859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Faa-PA | 417 | CG14993-PA | 1..417 | 1..417 | 2231 | 100 | Plus |