Clone BO09859 Report

Search the DGRC for BO09859

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptFaa-RA
Protein status:BO09859.pep: validated full length
Sequenced Size:1285

Clone Sequence Records

BO09859.3prime Sequence

960 bp (771 high quality bases) assembled on 2006-04-19

> BO09859.3prime
ATGGTCTAGAAAGCTTGCCTGCGGAACGGGGTGGGCAGGCAGCACCTGAC
CCACACACTCCCCGAATCCGATTCGCAGTCCGTTCTTTTCGCAGTGGCCA
CGGATGATGACCTCGTCAAAGTCCTGGAGGAATTTTCTGGTCTTACCACC
CGGAAGCTCCAATGTTTTGGTGCCCTTCCAGCAGAGCTCTAAAAGTGATC
CGTACGAGTCTGGAGTCTCACCGGAGATCGTTCCGGAGGCCATCAGATCA
CCAGGACGCAGATTACAACCGGTGACTGTGTGATGAGCGATTTGCTGCAG
TGGAGTCCAATAAAGGTGTTTGAAGTTCGACTTTGAAATAAGCGCTTCGT
TTTGATCGGCGGGTTTCAAAGACACCTCGAGGTTGATATCAAAGTTAAAG
GGAATGTTCTGGCGCAGATAGGGAAGCACCTCCGGTTCCTGAGGAAAGTT
GTCCAAGACGAAGGGCTTCAGGGCAGCTGTGGGCACTACCCAAGGGGAGA
TGGTGGTTCCCAGATTCTTTGCGGTGAAGGGGCCCAGTGGCACATATTCC
CACTTCTGAATATCCCTGGCACTCCAGTCGTTCATCAGCGTGAAACCGAA
CACGTTCTTCCAGGCCTCATCCACGCGTATGGGTTCACCCAGCTGATTTC
CCTTACCACCGATAAAGAAAGCCATTTCTAGTTCGAAATCCAGAAGCTTG
CAGGCGCCAAAGACGGGCTTCTCTGCTCCATCGGGAAACGTTTGACCAAG
AGGACGACGGATGGGAGTACCGGAAACCACCACAGAACTTGCACGACCAT
GATAGCCCACCGGCAGATGGCGCCAGTTGGGCATCAGAGCATTGTCTGGT
CCACGGAACATAATGCCGACATTGGTGGCATGGTGGATGGATGAGTAAAA
GTCTGTATAGTCACCAATCTGTGCAGGCAGGTGCAGCTTGATCTCAGACT
GTGGCACAAT

BO09859.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14993-PA 1254 Faa-RA 310..1251 960..19 4710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-RA 1421 CG14993-RA 424..1365 960..19 4710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4072490..4073087 363..960 2990 100 Plus
3L 28110227 3L 4072088..4072431 19..362 1720 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:25:34 has no hits.

BO09859.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:11 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
Faa-PA 310..1254 18..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:17 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14993-PA 310..1254 18..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:43:17 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 424..1365 19..960 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:49:33 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 424..1365 19..960 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:49:33 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4072088..4072431 19..362 100 <- Plus
3L 4072490..4073087 363..960 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:43:17 Download gff for BO09859.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4072088..4072431 19..362 100 <- Plus
arm_3L 4072490..4073087 363..960 100   Plus

BO09859.5prime Sequence

904 bp (763 high quality bases) assembled on 2006-04-19

> BO09859.5prime
GAAGTTATCAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACA
GCGATTTTCCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAAC
AATAAAGTTCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCT
GAAAGCTGTCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGG
CCGAAACTTTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTG
GTAAGAAGCCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCA
CAATGTGGACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGC
TGCACCTGCCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATC
CACCATGCCACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCT
GATGCCCAACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTT
CTGTGGTGGTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTT
CCCGATGGAGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTT
CGAACTAGAAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTG
AACCCATACGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTG
ATGAACGACTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACT
GGGCCCCTTCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAG
TGCCCACAGCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAGGAA
CCGGAGGTGCTTCCCTATCTGCGCCAGAACATTCCCTTTTACTTTGATAT
CAAC

BO09859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14993-PA 1254 Faa-RA 1..888 17..904 4415 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-RA 1421 CG14993-RA 115..1002 17..904 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4072509..4073091 904..322 2900 99.8 Minus
3L 28110227 3L 4073152..4073369 321..104 1090 100 Minus
3L 28110227 3L 4073754..4073840 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:51:33 has no hits.

BO09859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:12 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
Faa-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:19 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14993-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:11:24 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 115..1002 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:30 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 115..1002 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:30 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4073152..4073369 104..321 100 <- Minus
3L 4073754..4073840 17..103 100   Minus
3L 4072509..4073091 322..904 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:11:24 Download gff for BO09859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4072509..4073091 322..904 99 <- Minus
arm_3L 4073152..4073369 104..321 100 <- Minus
arm_3L 4073754..4073840 17..103 100   Minus

BO09859.complete Sequence

1285 bp (1285 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631596

> BO09859.complete
GAAGTTATCAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACA
GCGATTTTCCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAAC
AATAAAGTTCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCT
GAAAGCTGTCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGG
CCGAAACTTTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTG
GTAAGAAGCCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCA
CAATGTGGACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGC
TGCACCTGCCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATC
CACCATGCCACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCT
GATGCCCAACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTT
CTGTGGTGGTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTT
CCCGATGGAGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTT
CGAACTAGAAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTG
AACCCATACGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTG
ATGAACGACTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACT
GGGCCCCTTCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAG
TGCCCACAGCTGCCCTGAAGCCCTTCGTCTTGGACAACTTTCCTCAGGAA
CCGGAGGTGCTTCCCTATCTGCGCCAGAACATTCCCTTTAACTTTGATAT
CAACCTCGAGGTGTCTTTGAAACCCGCCGATCAAAACGAAGCGCTTATTT
CAAAGTCGAACTTCAAACACCTTTATTGGACTCCACTGCAGCAAATCGCT
CATCACACAGTCACCGGTTGTAATCTGCGTCCTGGTGATCTGATGGCCTC
CGGAACGATCTCCGGTGAGACTCCAGACTCGTACGGATCACTTTTAGAGC
TCTGCTGGAAGGGCACCAAAACATTGGAGCTTCCGGGTGGTAAGACCAGA
AAATTCCTCCAGGACTTTGACGAGGTCATCATCCGTGGCCACTGCGAAAA
GAACGGACTGCGAATCGGATTCGGGGAGTGTGTGGGTCAGGTGCTGCCTG
CCCACCCCGTTCCGCAGGCAAGCTTTCTAGACCAT

BO09859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-RA 1254 CG14993-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-RA 1421 CG14993-RA 115..1365 17..1267 6255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4072490..4073091 923..322 3010 100 Minus
3L 28110227 3L 4072088..4072431 1267..924 1720 100 Minus
3L 28110227 3L 4073152..4073369 321..104 1090 100 Minus
3L 28110227 3L 4073754..4073840 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:50:24 has no hits.

BO09859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:12 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 1..1254 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:02 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 110..1360 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:21 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 115..1365 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:12 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 110..1360 17..1267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:21 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
Faa-RA 115..1365 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:21 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4073152..4073369 104..321 100 <- Minus
3L 4073754..4073840 17..103 100   Minus
3L 4072086..4072431 924..1269 99 <- Minus
3L 4072490..4073091 322..923 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:21 Download gff for BO09859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4072086..4072431 924..1269 99 <- Minus
arm_3L 4072490..4073091 322..923 100 <- Minus
arm_3L 4073152..4073369 104..321 100 <- Minus
arm_3L 4073754..4073840 17..103 100   Minus

BO09859.pep Sequence

Translation from 16 to 1285

> BO09859.pep
MSQSFVPVPENSDFPLENLPYAVFSTENNKVHRICVAIGEHVLDLKAVSQ
LFPFQVQKSLQAETLNELMGLDFEAWDVVRSQTQKLLTKGSELDHNVDLK
AVSIVPQSEIKLHLPAQIGDYTDFYSSIHHATNVGIMFRGPDNALMPNWR
HLPVGYHGRASSVVVSGTPIRRPLGQTFPDGAEKPVFGACKLLDFELEMA
FFIGGKGNQLGEPIRVDEAWKNVFGFTLMNDWSARDIQKWEYVPLGPFTA
KNLGTTISPWVVPTAALKPFVLDNFPQEPEVLPYLRQNIPFNFDINLEVS
LKPADQNEALISKSNFKHLYWTPLQQIAHHTVTGCNLRPGDLMASGTISG
ETPDSYGSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHCEKNGLRI
GFGECVGQVLPAHPVPQASFLDH

BO09859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Faa-PA 417 CG14993-PA 1..417 1..417 2231 100 Plus