Clone BO09860 Report

Search the DGRC for BO09860

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG31148-RA
Protein status:BO09860.pep: validated full length
Sequenced Size:1717

Clone Sequence Records

BO09860.3prime Sequence

935 bp (818 high quality bases) assembled on 2006-04-19

> BO09860.3prime
ATGGTCTAGAAAGCTTGCACTGTACAGCAGAGTGTGAATGGATTTGGCCG
GAACATTGACAACGAACTGACCCCGAATACTATCCACCAAAGTGATGTCC
AGATCGGCGCGACCACTATTGAAGAGAACGGCGGTGATTTTGTTGTCCGG
TCGCAGGAATGCAACGGAATCCAGATTAACATTACTAGGTACTGCATCTA
TGCGAACGGATCCCTCTGGAACCCACTTGGAGAAGTGACCAATGGCATAG
AACATGGGCTGCTTGTAAAACTCCTCGAATGTTGTTGTATTCACAATCAC
TGGGGCATCCACCGTGTTGTCCACGTAGTTAGGACCGCCAATCTCGTCCA
GACAAATGTTCCAGTCAATCCAGCCATGGAAGCCCAGCTTAATGTTAAGC
AAGTAATCTCTGGCATACTTCTCGGCCCGCTCCCAGCTTCCCAGCAGAGG
AGCAGCTGCCTGCCAGGGCTTGTCCCCTATGCAGGACTCGGAAACTATCA
AAATCTTGTCGGGGGCATATTCCTTGGTCTGTTCGATAAAGCTGTTGCCA
AATATTTCATCCCAATACCAGTGCAGCGATAGCCCATCGAGGTAATCAAT
CGAGTTTGGTCGAGTGCGGTTCATCATTTTAAACCAATGGGGAAAGGAAT
AGCGTTGGTCATCGTTGCCAAACAGGGTGATGTCCTTGAACTCAGAGTTA
CGGATCGTGGGACCCAGATAATCGTTCAGCCAAATGGCCTGAGTCTGTGG
CGTCCATCCCAAGCTCATGAACTTAACGAAATACATGAAAATGATGCCAT
TCAATGGTTCGTTGCCCGTGGAAATGGCCCAAATGGGAATGCCATTGTCC
TTCATAAGTCTTAGCCAACGCAGATGGTAATCGGCCCCAGTCTGGTAGTA
AGCCCTCTTGAGGCGTCCAAATCCTGTCCACCTGT

BO09860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 1686 CG31148-RA 767..1683 935..19 4560 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 801..1717 935..19 4570 99.9 Minus
CG31414-RC 2335 CG31414-RC 901..1040 834..695 190 76.6 Minus
CG31414-RB 2030 CG31414-RB 901..1040 834..695 190 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23701878..23702221 625..282 1720 100 Minus
3R 32079331 3R 23701473..23701783 935..625 1540 99.7 Minus
3R 32079331 3R 23702283..23702545 281..19 1315 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:40:20 has no hits.

BO09860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:13 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 767..1686 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:21 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 767..1686 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:54 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 801..1726 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:51 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 801..1726 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:51 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23702283..23702554 11..281 98   Minus
3R 23701473..23701783 625..935 99 -> Minus
3R 23701879..23702221 282..624 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:54 Download gff for BO09860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19527195..19527505 625..935 99 -> Minus
arm_3R 19527601..19527943 282..624 100 -> Minus
arm_3R 19528005..19528276 11..281 98   Minus

BO09860.5prime Sequence

846 bp (845 high quality bases) assembled on 2006-04-19

> BO09860.5prime
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCT

BO09860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 1686 CG31148-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 35..864 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23700770..23701536 80..846 3835 100 Plus
3R 32079331 3R 23700655..23700720 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:05:40 has no hits.

BO09860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:14 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:22 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:39 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 21..864 1..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:45 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 21..864 1..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:45 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23700771..23701536 81..846 100   Plus
3R 23700641..23700718 1..80 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:39 Download gff for BO09860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19526363..19526440 1..80 93 -> Plus
arm_3R 19526493..19527258 81..846 100   Plus

BO09860.complete Sequence

1717 bp (1717 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631597

> BO09860.complete
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCTGCGT
TGGCTAAGACTTATGAAGGACAATGGCATTCCCATTTGGGCCATTTCCAC
GGGCAACGAACCATTGAATGGCATCATTTTCATGTATTTCGTTAAGTTCA
TGAGCTTGGGATGGACGCCACAGACTCAGGCCATTTGGCTGAACGATTAT
CTGGGTCCCACGATCCGTAACTCTGAGTTCAAGGACATCACCCTGTTTGG
CAACGATGACCAACGCTATTCCTTTCCCCATTGGTTTAAAATGATGAACC
GCACTCGACCAAACTCGATTGATTACCTCGATGGGCTATCGCTGCACTGG
TATTGGGATGAAATATTTGGCAACAGCTTTATCGAACAGACCAAGGAATA
TGCCCCCGACAAGATTTTGATAGTTTCCGAGTCCTGCATAGGGGACAAGC
CCTGGCAGGCAGCTGCTCCTCTGCTGGGAAGCTGGGAGCGGGCCGAGAAG
TATGCCAGAGATTACTTGCTTAACATTAAGCTGGGCTTCCATGGCTGGAT
TGACTGGAACATTTGTCTGGACGAGATTGGCGGTCCTAACTACGTGGACA
ACACGGTGGATGCCCCAGTGATTGTGAATACAACAACATTCGAGGAGTTT
TACAAGCAGCCCATGTTCTATGCCATTGGTCACTTCTCCAAGTGGGTTCC
AGAGGGATCCGTTCGCATAGATGCAGTACCTAGTAATGTTAATCTGGATT
CCGTTGCATTCCTGCGACCGGACAACAAAATCACCGCCGTTCTCTTCAAT
AGTGGTCGCGCCGATCTGGACATCACTTTGGTGGATAGTATTCGGGGTCA
GTTCGTTGTCAATGTTCCGGCCAAATCCATTCACACTCTGCTGTACAGTG
CAAGCTTTCTAGACCAT

BO09860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1686 CG31148-PA 1..1683 17..1699 8415 100 Plus
CG31414-RC 1701 CG31414-PC 868..1007 884..1023 190 75.7 Plus
CG31414-RB 1701 CG31414-PB 868..1007 884..1023 190 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 35..1717 17..1699 8415 100 Plus
CG31414-RC 2335 CG31414-RC 901..1040 884..1023 190 75.7 Plus
CG31414-RB 2030 CG31414-RB 901..1040 884..1023 190 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23700770..23701783 80..1093 5070 100 Plus
3R 32079331 3R 23701878..23702221 1093..1436 1720 100 Plus
3R 32079331 3R 23702283..23702545 1437..1699 1315 100 Plus
3R 32079331 3R 23700655..23700720 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:43:26 has no hits.

BO09860.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:14 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 1..1686 17..1702 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:06 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 4..1709 1..1707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:39:41 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 35..1717 17..1701 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:14 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 4..1709 1..1707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:11 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 35..1717 17..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:11 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23700655..23700718 17..80 100 -> Plus
3R 23700771..23701783 81..1093 100 -> Plus
3R 23701879..23702221 1094..1436 100 -> Plus
3R 23702283..23702545 1437..1701 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:39:41 Download gff for BO09860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19526377..19526440 17..80 100 -> Plus
arm_3R 19526493..19527505 81..1093 100 -> Plus
arm_3R 19527601..19527943 1094..1436 100 -> Plus
arm_3R 19528005..19528267 1437..1701 99   Plus

BO09860.pep Sequence

Translation from 16 to 1717

> BO09860.pep
MGKMFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDY
LENPVLTDENEWFLISSSKQGLRFSTTSDKFGKEEKFTVQDYVEPTQETA
NATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSKTHQKMVGFGGSY
TGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWS
YAEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPP
WMKTNNRWTGFGRLKRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPL
NGIIFMYFVKFMSLGWTPQTQAIWLNDYLGPTIRNSEFKDITLFGNDDQR
YSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIFGNSFIEQTKEYAPDKI
LIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNIC
LDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVR
IDAVPSNVNLDSVAFLRPDNKITAVLFNSGRADLDITLVDSIRGQFVVNV
PAKSIHTLLYSASFLDH

BO09860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 561 CG31148-PA 1..561 1..561 3003 100 Plus
CG31414-PC 566 CG31414-PC 15..565 15..560 1431 49.2 Plus
CG31414-PB 566 CG31414-PB 15..565 15..560 1431 49.2 Plus