Clone Sequence Records
BO09860.3prime Sequence
935 bp (818 high quality bases) assembled on 2006-04-19
> BO09860.3prime
ATGGTCTAGAAAGCTTGCACTGTACAGCAGAGTGTGAATGGATTTGGCCG
GAACATTGACAACGAACTGACCCCGAATACTATCCACCAAAGTGATGTCC
AGATCGGCGCGACCACTATTGAAGAGAACGGCGGTGATTTTGTTGTCCGG
TCGCAGGAATGCAACGGAATCCAGATTAACATTACTAGGTACTGCATCTA
TGCGAACGGATCCCTCTGGAACCCACTTGGAGAAGTGACCAATGGCATAG
AACATGGGCTGCTTGTAAAACTCCTCGAATGTTGTTGTATTCACAATCAC
TGGGGCATCCACCGTGTTGTCCACGTAGTTAGGACCGCCAATCTCGTCCA
GACAAATGTTCCAGTCAATCCAGCCATGGAAGCCCAGCTTAATGTTAAGC
AAGTAATCTCTGGCATACTTCTCGGCCCGCTCCCAGCTTCCCAGCAGAGG
AGCAGCTGCCTGCCAGGGCTTGTCCCCTATGCAGGACTCGGAAACTATCA
AAATCTTGTCGGGGGCATATTCCTTGGTCTGTTCGATAAAGCTGTTGCCA
AATATTTCATCCCAATACCAGTGCAGCGATAGCCCATCGAGGTAATCAAT
CGAGTTTGGTCGAGTGCGGTTCATCATTTTAAACCAATGGGGAAAGGAAT
AGCGTTGGTCATCGTTGCCAAACAGGGTGATGTCCTTGAACTCAGAGTTA
CGGATCGTGGGACCCAGATAATCGTTCAGCCAAATGGCCTGAGTCTGTGG
CGTCCATCCCAAGCTCATGAACTTAACGAAATACATGAAAATGATGCCAT
TCAATGGTTCGTTGCCCGTGGAAATGGCCCAAATGGGAATGCCATTGTCC
TTCATAAGTCTTAGCCAACGCAGATGGTAATCGGCCCCAGTCTGGTAGTA
AGCCCTCTTGAGGCGTCCAAATCCTGTCCACCTGT
BO09860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 1686 | CG31148-RA | 767..1683 | 935..19 | 4560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 801..1717 | 935..19 | 4570 | 99.9 | Minus |
CG31414-RC | 2335 | CG31414-RC | 901..1040 | 834..695 | 190 | 76.6 | Minus |
CG31414-RB | 2030 | CG31414-RB | 901..1040 | 834..695 | 190 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23701878..23702221 | 625..282 | 1720 | 100 | Minus |
3R | 32079331 | 3R | 23701473..23701783 | 935..625 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 23702283..23702545 | 281..19 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:40:20 has no hits.
BO09860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:13 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 767..1686 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:21 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 767..1686 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:54 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 801..1726 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:51 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 801..1726 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:51 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23702283..23702554 | 11..281 | 98 | | Minus |
3R | 23701473..23701783 | 625..935 | 99 | -> | Minus |
3R | 23701879..23702221 | 282..624 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:54 Download gff for
BO09860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19527195..19527505 | 625..935 | 99 | -> | Minus |
arm_3R | 19527601..19527943 | 282..624 | 100 | -> | Minus |
arm_3R | 19528005..19528276 | 11..281 | 98 | | Minus |
BO09860.5prime Sequence
846 bp (845 high quality bases) assembled on 2006-04-19
> BO09860.5prime
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCT
BO09860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 1686 | CG31148-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 35..864 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23700770..23701536 | 80..846 | 3835 | 100 | Plus |
3R | 32079331 | 3R | 23700655..23700720 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:05:40 has no hits.
BO09860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:14 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:22 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:40:39 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 21..864 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:45 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 21..864 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:45 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23700771..23701536 | 81..846 | 100 | | Plus |
3R | 23700641..23700718 | 1..80 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:40:39 Download gff for
BO09860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19526363..19526440 | 1..80 | 93 | -> | Plus |
arm_3R | 19526493..19527258 | 81..846 | 100 | | Plus |
BO09860.complete Sequence
1717 bp (1717 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631597
> BO09860.complete
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCTGCGT
TGGCTAAGACTTATGAAGGACAATGGCATTCCCATTTGGGCCATTTCCAC
GGGCAACGAACCATTGAATGGCATCATTTTCATGTATTTCGTTAAGTTCA
TGAGCTTGGGATGGACGCCACAGACTCAGGCCATTTGGCTGAACGATTAT
CTGGGTCCCACGATCCGTAACTCTGAGTTCAAGGACATCACCCTGTTTGG
CAACGATGACCAACGCTATTCCTTTCCCCATTGGTTTAAAATGATGAACC
GCACTCGACCAAACTCGATTGATTACCTCGATGGGCTATCGCTGCACTGG
TATTGGGATGAAATATTTGGCAACAGCTTTATCGAACAGACCAAGGAATA
TGCCCCCGACAAGATTTTGATAGTTTCCGAGTCCTGCATAGGGGACAAGC
CCTGGCAGGCAGCTGCTCCTCTGCTGGGAAGCTGGGAGCGGGCCGAGAAG
TATGCCAGAGATTACTTGCTTAACATTAAGCTGGGCTTCCATGGCTGGAT
TGACTGGAACATTTGTCTGGACGAGATTGGCGGTCCTAACTACGTGGACA
ACACGGTGGATGCCCCAGTGATTGTGAATACAACAACATTCGAGGAGTTT
TACAAGCAGCCCATGTTCTATGCCATTGGTCACTTCTCCAAGTGGGTTCC
AGAGGGATCCGTTCGCATAGATGCAGTACCTAGTAATGTTAATCTGGATT
CCGTTGCATTCCTGCGACCGGACAACAAAATCACCGCCGTTCTCTTCAAT
AGTGGTCGCGCCGATCTGGACATCACTTTGGTGGATAGTATTCGGGGTCA
GTTCGTTGTCAATGTTCCGGCCAAATCCATTCACACTCTGCTGTACAGTG
CAAGCTTTCTAGACCAT
BO09860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1686 | CG31148-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
CG31414-RC | 1701 | CG31414-PC | 868..1007 | 884..1023 | 190 | 75.7 | Plus |
CG31414-RB | 1701 | CG31414-PB | 868..1007 | 884..1023 | 190 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 35..1717 | 17..1699 | 8415 | 100 | Plus |
CG31414-RC | 2335 | CG31414-RC | 901..1040 | 884..1023 | 190 | 75.7 | Plus |
CG31414-RB | 2030 | CG31414-RB | 901..1040 | 884..1023 | 190 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23700770..23701783 | 80..1093 | 5070 | 100 | Plus |
3R | 32079331 | 3R | 23701878..23702221 | 1093..1436 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 23702283..23702545 | 1437..1699 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 23700655..23700720 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:43:26 has no hits.
BO09860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:14 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 1..1686 | 17..1702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:06 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 4..1709 | 1..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:39:41 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 35..1717 | 17..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:14 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 4..1709 | 1..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:11 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 35..1717 | 17..1701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:11 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23700655..23700718 | 17..80 | 100 | -> | Plus |
3R | 23700771..23701783 | 81..1093 | 100 | -> | Plus |
3R | 23701879..23702221 | 1094..1436 | 100 | -> | Plus |
3R | 23702283..23702545 | 1437..1701 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:39:41 Download gff for
BO09860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19526377..19526440 | 17..80 | 100 | -> | Plus |
arm_3R | 19526493..19527505 | 81..1093 | 100 | -> | Plus |
arm_3R | 19527601..19527943 | 1094..1436 | 100 | -> | Plus |
arm_3R | 19528005..19528267 | 1437..1701 | 99 | | Plus |
BO09860.pep Sequence
Translation from 16 to 1717
> BO09860.pep
MGKMFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDY
LENPVLTDENEWFLISSSKQGLRFSTTSDKFGKEEKFTVQDYVEPTQETA
NATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSKTHQKMVGFGGSY
TGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWS
YAEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPP
WMKTNNRWTGFGRLKRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPL
NGIIFMYFVKFMSLGWTPQTQAIWLNDYLGPTIRNSEFKDITLFGNDDQR
YSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIFGNSFIEQTKEYAPDKI
LIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNIC
LDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVR
IDAVPSNVNLDSVAFLRPDNKITAVLFNSGRADLDITLVDSIRGQFVVNV
PAKSIHTLLYSASFLDH
BO09860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 561 | CG31148-PA | 1..561 | 1..561 | 3003 | 100 | Plus |
CG31414-PC | 566 | CG31414-PC | 15..565 | 15..560 | 1431 | 49.2 | Plus |
CG31414-PB | 566 | CG31414-PB | 15..565 | 15..560 | 1431 | 49.2 | Plus |