Clone BO09863 Report

Search the DGRC for BO09863

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:98
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptPfrx-RB
Protein status:BO09863.pep: validated full length
Sequenced Size:2182

Clone Sequence Records

BO09863.3prime Sequence

947 bp (835 high quality bases) assembled on 2006-04-19

> BO09863.3prime
ATGGTCTAGAAAGCTTGCTTGGTGCGCCTGGACATCGACGCGCCCGCCAT
TGCCGTTCGTGGCCGTCGCCACATCGTCACCCACAATGAGCACCTTGCCG
ACGCCATCGGGTGCCACCAGCTCGCCGCTGAGGCCATCCAGTCCTGGCTC
ACTGACGTCGCCGGGAATCTTAGGCTTGGGACGATGCGTGTCCACCGCAT
CGATGGGCAACTTGATGTGCTCCACCTTGCAGCCGTAGGCCACCGGCGTC
AGCTTGATGACCGTGTGCAGCGGCACATACAGGTAGGGCAGCTCGTCGGC
GGACTTGTCCAGGAAGTAGGCAAAGAGGCAGCGCAGCACCGCCTGGTGCG
AAACAACCAGCACATTGCCCTGTCGCTCCAGCTCCATGATGACCGGCTCC
AGTCGAGCCACAAGATCCTCGTAGCTCTCGCCGCGCGGATAGCGATAGGC
GAACTTGTTAACGTCGCGAGCCTTGAATTCCTCGGGGAACTTCTCCTTGA
TTTGCTCGTACGTCATTTCCTCGCAATGACCGGCATCGATCTCGTTTAAC
GCCTTCCAGCGCTCCTGCGGCGCCTTCACATCGGCCACCGTCTGAATGGC
ACGCTTCATCCATGACGTCCACACGCGCAGACCGTCGATCTGCTGCTGGG
CGATGAAAGTGGATAGCGCATTGGCATACTGGTGGCCACGGGCGCTCAGG
TTCGAGTCGCCGCCGATGAGCCCGCTCAGGTTGTACTCGCTCTCGCCGTG
ACGCGTCAGGTAGATGGTGCGCGGCGTAATGTGGATGTTCATCAGGTAGT
AGACAATGCGCGACTCCACGTGACCCTCGTTATTGTAGACGACCACCTTC
TTGCCGGCGTTGTACACCTTCATGAAGCTGAGGTGCGACTCGGTAACCTC
GTCGATGGGCTGGTAGCGCTCTTCGTAGTGCTCGATGCGCTGCAGGA

BO09863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3400-PH 1611 Pfrx-RH 680..1608 947..19 4645 100 Minus
CG3400-PD 1611 Pfrx-RD 680..1608 947..19 4645 100 Minus
CG3400-PE 1611 Pfrx-RE 680..1608 947..19 4645 100 Minus
CG3400-PF 1611 Pfrx-RF 680..1608 947..19 4645 100 Minus
CG3400-PA 1611 Pfrx-RA 680..1608 947..19 4645 100 Minus
CG3400-PI 1611 Pfrx-RI 680..1608 947..19 4645 100 Minus
CG3400-PG 2151 Pfrx-RG 1220..2148 947..19 4645 100 Minus
CG3400-PB 2151 Pfrx-RB 1220..2148 947..19 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-RN 3373 CG3400-RN 1619..2547 947..19 4645 100 Minus
Pfrx-RM 3031 CG3400-RM 1277..2205 947..19 4645 100 Minus
Pfrx-RL 3383 CG3400-RL 1629..2557 947..19 4645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19507596..19508524 947..19 4645 100 Minus
Blast to na_te.dros performed on 2015-02-06 16:00:22 has no hits.

BO09863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:18 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-PA 681..1611 16..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:26 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3400-PB 1221..2151 16..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:19:05 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RL 1630..2557 19..946 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:05:43 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RL 1630..2557 19..946 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:05:43 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19507597..19508524 19..946 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:19:05 Download gff for BO09863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19401630..19402557 19..946 100   Minus

BO09863.5prime Sequence

933 bp (826 high quality bases) assembled on 2006-04-19

> BO09863.5prime
GAAGTTATCAGTCGACATGGCTCAGTCGACGGCAACGGCGCCGCTCTACG
CCGGCTACAAACCCCTGATCAGCTCGGTAACCACGGATACGGATCCGGAT
CCGGATATGGCCCCCTCCCTGTCAGCAGAAGGAACAGCTGATCAGCCCCA
AAAATCACAGAGAGAAGGCGAAGTGAAAGGAGCATCATCAGAAGCCCAAC
GAACAAAAGCAAACCCAAACCAGATACTTTCAGCCAGCAACAGCAGCTCA
ATCGACGAGCAAGACGAGGATCAAGTAGGAACATTGCCATTGCCCCTGCT
GTCCATCAATAGAAGGACACCCACCCTGCTCCCCCGCCCCGTTCCACCAT
CATCGACCCGATTCACATCGTCCTACAACGACGACCTGTGCACGTGCAGC
AACTGCGCGTACTCCAGTTTCTCATCCTCCTCCTCCTCCGCCTCGTCCAC
ATCCTCGTCATCCACGAGCGCTACAGCAGCAGGAACAGCATTAGCATCAG
CAGCCGCATCCGCCGTTGCCAAGAAGCTAGCACGCTCCGTGACCGCCACC
AGCATCATGGACATGCCGTACAACACCTCGCCGTCGCTACGCGTGCGCAC
CACCTCGCTGAATCAGCTGAAGAAGACCGCCGACCTGGCCATCGAGAATG
AGCTGCACGTCTGTCCGTCGGTGATGTCCGAGGAGCTGCGCAAGCTGCTG
CCGCCCACCTCGGAGACCGTGATGACCAAACCCTTCCCCATCCGGGGCGA
ACGGACCATTGCCGACTGTACCACGCCGCATGTGATCGCCATGGTTGGCC
TGCCGGCGCGCGGCAGACCTTTATCTCCNAGAAGCTAGCGCGCTACCCTC
ACTGGATCGGAATCTCCACGCGTGTTTTCAATCTGGGCGAGTACAGGCGT
CATGCAACCACAGCATACAAGTCGCACGAGTTC

BO09863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3400-PG 2151 Pfrx-RG 1..799 17..815 3995 100 Plus
CG3400-PB 2151 Pfrx-RB 1..799 17..815 3995 100 Plus
CG3400-PH 1611 Pfrx-RH 1..259 557..815 1295 100 Plus
CG3400-PD 1611 Pfrx-RD 1..259 557..815 1295 100 Plus
CG3400-PE 1611 Pfrx-RE 1..259 557..815 1295 100 Plus
CG3400-PF 1611 Pfrx-RF 1..259 557..815 1295 100 Plus
CG3400-PA 1611 Pfrx-RA 1..259 557..815 1295 100 Plus
CG3400-PI 1611 Pfrx-RI 1..259 557..815 1295 100 Plus
CG3400-PG 2151 Pfrx-RG 836..918 851..933 415 100 Plus
CG3400-PB 2151 Pfrx-RB 836..918 851..933 415 100 Plus
CG3400-PH 1611 Pfrx-RH 296..378 851..933 415 100 Plus
CG3400-PD 1611 Pfrx-RD 296..378 851..933 415 100 Plus
CG3400-PE 1611 Pfrx-RE 296..378 851..933 415 100 Plus
CG3400-PF 1611 Pfrx-RF 296..378 851..933 415 100 Plus
CG3400-PA 1611 Pfrx-RA 296..378 851..933 415 100 Plus
CG3400-PI 1611 Pfrx-RI 296..378 851..933 415 100 Plus
CG3400-PG 2151 Pfrx-RG 800..832 815..847 146 96.9 Plus
CG3400-PB 2151 Pfrx-RB 800..832 815..847 146 96.9 Plus
CG3400-PH 1611 Pfrx-RH 260..292 815..847 146 96.9 Plus
CG3400-PD 1611 Pfrx-RD 260..292 815..847 146 96.9 Plus
CG3400-PE 1611 Pfrx-RE 260..292 815..847 146 96.9 Plus
CG3400-PF 1611 Pfrx-RF 260..292 815..847 146 96.9 Plus
CG3400-PA 1611 Pfrx-RA 260..292 815..847 146 96.9 Plus
CG3400-PI 1611 Pfrx-RI 260..292 815..847 146 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-RB 3376 CG3400-RB 403..1320 17..933 4509 99.6 Plus
Pfrx-RG 2928 CG3400-RG 403..1320 17..933 4509 99.6 Plus
Pfrx-RN 3373 CG3400-RN 403..1317 17..933 4454 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19506483..19507294 123..933 3954 99.4 Plus
X 23542271 X 19498775..19498880 17..122 530 100 Plus
Blast to na_te.dros performed 2015-02-11 18:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 3220..3254 143..109 121 82.9 Minus

BO09863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:23:18 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-PG 1..918 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:31:28 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3400-PG 1..918 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:29:24 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 403..1320 17..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:51 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 403..1320 17..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:51 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19498775..19498880 17..122 100 -> Plus
X 19506483..19507294 123..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:29:24 Download gff for BO09863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19392808..19392913 17..122 100 -> Plus
arm_X 19400516..19401327 123..933 99   Plus

BO09863.complete Sequence

2182 bp (2182 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631599

> BO09863.complete
GAAGTTATCAGTCGACATGGCTCAGTCGACGGCAACGGCGCCGCTCTACG
CCGGCTACAAACCCCTGATCAGCTCGGTAACCACGGATACGGATCCGGAT
CCGGATATGGCCCCCTCCCTGTCAGCAGAAGGAACAGCTGATCAGCCCCA
AAAATCACAGAGAGAAGGCGAAGTGAAAGGAGCATCATCAGAAGCCCAAC
GAACAAAAGCAAACCCAAACCAGATACTTTCAGCCAGCAACAGCAGCTCA
ATCGACGAGCAAGACGAGGATCAAGTAGGAACATTGCCATTGCCCCTGCT
GTCCATCAATAGAAGGACACCCACCCTGCTCCCCCGCCCCGTTCCACCAT
CATCGACCCGATTCACATCGTCCTACAACGACGACCTGTGCACGTGCAGC
AACTGCGCGTACTCCAGTTTCTCATCCTCCTCCTCCTCCGCCTCGTCCAC
ATCCTCGTCATCCACGAGCGCTACAGCAGCAGGAACAGCATTAGCATCAG
CAGCCGCATCCGCCGTTGCCAAGAAGCTAGCACGCTCCGTGACCGCCACC
AGCATCATGGACATGCCGTACAACACCTCGCCGTCGCTACGCGTGCGCAC
CACCTCGCTGAATCAGCTGAAGAAGACCGCCGACCTGGCCATCGAGAATG
AGCTGCACGTCTGTCCGTCGGTGATGTCCGAGGAGCTGCGCAAGCTGCTG
CCGCCCACCTCGGAGACCGTGATGACCAAACCCTTCCCCATCCGGGGCGA
ACGGACCATTGCCGACTGTACCACGCCGCATGTGATCGCCATGGTTGGCC
TGCCGGCGCGCGGCAAGACCTTTATCTCCAAGAAGCTAGCGCGCTACCTC
AACTGGATCGGAATCTCCACGCGTGTTTTCAATCTGGGCGAGTACAGGCG
TCATGCAACCACAGCATACAAGTCGCACGAGTTCTTCCGCGCCGACAACG
AGGAGGCGATGGCCATCCGCAACCGGTGCGCCAATCAGGCGCTGCACGAC
TCGTGCGATTGGCTGCTGAGCGGCCAGGGAAGCATCGCCGTGTTCGATGC
TACCAACTCTACGCGCGACCGTCGCCAGCTGATCCACGACATTGTCGTGA
AGCAGCATGGTTTCCGCCTGTTCTTCGTCGAGTCCATTTGCGACGATCCG
CAGATTATCGAGCAGAATATTCTGGAGGTAAAGGTCAGCTCACCAGATTA
CCTTAACATGAACACGGAGCTGGTGGTGCGGGACTTCCTGCAGCGCATCG
AGCACTACGAAGAGCGCTACCAGCCCATCGACGAGGTTACCGAGTCGCAC
CTCAGCTTCATGAAGGTGTACAACGCCGGCAAGAAGGTGGTCGTCTACAA
TAACGAGGGTCACGTGGAGTCGCGCATTGTCTACTACCTGATGAACATCC
ACATTACGCCGCGCACCATCTACCTGACGCGTCACGGCGAGAGCGAGTAC
AACCTGAGCGGGCTCATCGGCGGCGACTCGAACCTGAGCGCCCGTGGCCA
CCAGTATGCCAATGCGCTATCCACTTTCATCGCCCAGCAGCAGATCGACG
GTCTGCGCGTGTGGACGTCATGGATGAAGCGTGCCATTCAGACGGTGGCC
GATGTGAAGGCGCCGCAGGAGCGCTGGAAGGCGTTAAACGAGATCGATGC
CGGTCATTGCGAGGAAATGACGTACGAGCAAATCAAGGAGAAGTTCCCCG
AGGAATTCAAGGCTCGCGACGTTAACAAGTTCGCCTATCGCTATCCGCGC
GGCGAGAGCTACGAGGATCTTGTGGCTCGACTGGAGCCGGTCATCATGGA
GCTGGAGCGACAGGGCAATGTGCTGGTTGTTTCGCACCAGGCGGTGCTGC
GCTGCCTCTTTGCCTACTTCCTGGACAAGTCCGCCGACGAGCTGCCCTAC
CTGTATGTGCCGCTGCACACGGTCATCAAGCTGACGCCGGTGGCCTACGG
CTGCAAGGTGGAGCACATCAAGTTGCCCATCGATGCGGTGGACACGCATC
GTCCCAAGCCTAAGATTCCCGGCGACGTCAGTGAGCCAGGACTGGATGGC
CTCAGCGGCGAGCTGGTGGCACCCGATGGCGTCGGCAAGGTGCTCATTGT
GGGTGACGATGTGGCGACGGCCACGAACGGCAATGGCGGGCGCGTCGATG
TCCAGGCGCACCAAGCAAGCTTTCTAGACCAT

BO09863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-RB 2151 CG3400-PB 1..2148 17..2164 10740 100 Plus
Pfrx-RG 2151 CG3400-PG 1..2148 17..2164 10740 100 Plus
Pfrx-RN 2148 CG3400-PN 1..2145 17..2164 10660 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-RB 3376 CG3400-RB 403..2550 17..2164 10740 100 Plus
Pfrx-RG 2928 CG3400-RG 403..2550 17..2164 10740 100 Plus
Pfrx-RN 3373 CG3400-RN 403..2547 17..2164 10660 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19506483..19508524 123..2164 10210 100 Plus
X 23542271 X 19498775..19498880 17..122 530 100 Plus
Blast to na_te.dros performed 2014-11-27 08:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 3220..3254 143..109 121 82.9 Minus

BO09863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:59 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 1..2151 17..2167 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:02 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 403..2550 17..2164 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:39 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 403..2550 17..2166 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:59 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RB 403..2550 17..2164 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:04 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
Pfrx-RG 403..2550 17..2166 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:04 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
X 19498775..19498880 17..122 100 -> Plus
X 19506483..19508524 123..2166 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:39 Download gff for BO09863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19392808..19392913 17..122 100 -> Plus
arm_X 19400516..19402557 123..2166 99   Plus

BO09863.pep Sequence

Translation from 16 to 2182

> BO09863.pep
MAQSTATAPLYAGYKPLISSVTTDTDPDPDMAPSLSAEGTADQPQKSQRE
GEVKGASSEAQRTKANPNQILSASNSSSIDEQDEDQVGTLPLPLLSINRR
TPTLLPRPVPPSSTRFTSSYNDDLCTCSNCAYSSFSSSSSSASSTSSSST
SATAAGTALASAAASAVAKKLARSVTATSIMDMPYNTSPSLRVRTTSLNQ
LKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIAD
CTTPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTA
YKSHEFFRADNEEAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTR
DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILEVKVSSPDYLNMNT
ELVVRDFLQRIEHYEERYQPIDEVTESHLSFMKVYNAGKKVVVYNNEGHV
ESRIVYYLMNIHITPRTIYLTRHGESEYNLSGLIGGDSNLSARGHQYANA
LSTFIAQQQIDGLRVWTSWMKRAIQTVADVKAPQERWKALNEIDAGHCEE
MTYEQIKEKFPEEFKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQG
NVLVVSHQAVLRCLFAYFLDKSADELPYLYVPLHTVIKLTPVAYGCKVEH
IKLPIDAVDTHRPKPKIPGDVSEPGLDGLSGELVAPDGVGKVLIVGDDVA
TATNGNGGRVDVQAHQASFLDH

BO09863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pfrx-PB 716 CG3400-PB 1..716 1..716 3690 100 Plus
Pfrx-PG 716 CG3400-PG 1..716 1..716 3690 100 Plus
Pfrx-PN 715 CG3400-PN 1..715 1..716 3674 99.9 Plus
Pfrx-PM 536 CG3400-PM 1..536 181..716 2805 100 Plus
Pfrx-PL 536 CG3400-PL 1..536 181..716 2805 100 Plus